BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0126.0003.p (288 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001207207.1| nucleotide-binding [Bradyrhizobium sp. ORS 2... 239 4e-61 ref|YP_577183.1| hypothetical protein Nham_1915 [Nitrobacter ham... 239 4e-61 ref|NP_772711.1| hypothetical protein blr6071 [Bradyrhizobium ja... 237 2e-60 ref|YP_533892.1| hypothetical protein RPC_4047 [Rhodopseudomonas... 229 3e-58 ref|YP_001993687.1| hypothetical protein Rpal_4721 [Rhodopseudom... 229 5e-58 >ref|YP_001207207.1| nucleotide-binding [Bradyrhizobium sp. ORS 278] emb|CAL78990.1| conserved hypothetical protein; Nucleotide-binding [Bradyrhizobium sp. ORS 278] Length = 516 Score = 239 bits (609), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 129/265 (48%), Positives = 164/265 (61%), Gaps = 6/265 (2%) Query: 17 LAFPLTDLLYFGRETVANRLFNSYMQNAWDTQSGALSLLPLFLSMRAAIRANVLFTKARQ 76 LAFPL D+LYF AN L N Y+ A Q L LLPLF+++RAAIRA V K + Sbjct: 246 LAFPLMDMLYFDLPVAANHLLNRYLSIAASDQIDGLILLPLFMTIRAAIRAQVFLAKLDR 305 Query: 77 HQLDQE------IAAQAGRYFELARRLIEPEPPRLVAVGGKSGTGKSVLARDMARLIAPP 130 D A RYF+LAR+LI P P L+AVGG SGTGKS LAR +A ++ P Sbjct: 306 GDTDHTDPDGSATFETATRYFQLARQLIRPSAPMLIAVGGLSGTGKSALARALAPILKPR 365 Query: 131 PGALVLRSDVIRKQLYHVAEHATLPPETYTPEASDRVYQAMLDRAKRAMAQGISVVLDAA 190 PGA+V+RSDV+RK L+ VAE LP + Y+P+AS RVY + A R +AQG +VV+DA Sbjct: 366 PGAIVVRSDVLRKHLFGVAETERLPQKAYSPDASLRVYHELTKTAARVLAQGFAVVVDAV 425 Query: 191 FLKQAERDAARAAARNAKVKFSGLFLTADQAIRLRRVASRQHDASDATAGVVLSQESIDT 250 F K ER+ R A V F+GLFL AD IR R+ R +DASDAT+ + QE D Sbjct: 426 FAKHDEREEIRTLATRQNVPFAGLFLVADLRIRQERIEGRVNDASDATSAIAQDQERYDI 485 Query: 251 GHIDWQLIDASGSPAATLQRSMPCL 275 G +DW +DASG+P +TL +S+ L Sbjct: 486 GMLDWLRVDASGTPESTLDKSLSVL 510 >ref|YP_577183.1| hypothetical protein Nham_1915 [Nitrobacter hamburgensis X14] gb|ABE62723.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 526 Score = 239 bits (609), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 128/256 (50%), Positives = 162/256 (63%), Gaps = 1/256 (0%) Query: 17 LAFPLTDLLYFGRETVANRLFNSYMQNAWDTQSGALSLLPLFLSMRAAIRANVLFTKARQ 76 L+F L DLL++GR AN L N Y+ ++ ++ LPLF+SMRAAIRANVL + Sbjct: 253 LSFTLMDLLHYGRRLEANILLNRYLITPFEDNLDGIATLPLFMSMRAAIRANVLLARLGG 312 Query: 77 HQLDQEIAAQAGR-YFELARRLIEPEPPRLVAVGGKSGTGKSVLARDMARLIAPPPGALV 135 D+E A R Y LAR+LI P P LVA+GG SGTGK+VLAR +A I PPPGAL+ Sbjct: 313 SNTDKESIRLAARSYCALARQLISPASPTLVAIGGLSGTGKTVLARALADAIDPPPGALI 372 Query: 136 LRSDVIRKQLYHVAEHATLPPETYTPEASDRVYQAMLDRAKRAMAQGISVVLDAAFLKQA 195 LRSDV RKQ + E LP Y PEA+ +YQ + +RA R ++QG SV+LDA F K A Sbjct: 373 LRSDVTRKQYFQTHETQRLPTTAYQPEATSIIYQTLTERAGRILSQGHSVILDAVFAKPA 432 Query: 196 ERDAARAAARNAKVKFSGLFLTADQAIRLRRVASRQHDASDATAGVVLSQESIDTGHIDW 255 ER + A AR + F G FL +D R++RV R DASDAT +V QE+ D G +DW Sbjct: 433 ERHSVAAIARKLNLPFLGFFLVSDITTRMKRVGHRVSDASDATIDLVRHQENYDIGPLDW 492 Query: 256 QLIDASGSPAATLQRS 271 +IDASG+ TLQR Sbjct: 493 HMIDASGTSQQTLQRC 508 >ref|NP_772711.1| hypothetical protein blr6071 [Bradyrhizobium japonicum USDA 110] dbj|BAC51336.1| blr6071 [Bradyrhizobium japonicum USDA 110] Length = 510 Score = 237 bits (604), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 129/256 (50%), Positives = 163/256 (63%), Gaps = 1/256 (0%) Query: 17 LAFPLTDLLYFGRETVANRLFNSYMQNAWDTQSGALSLLPLFLSMRAAIRANVLFTKARQ 76 LAF L DLL+ G+ AN + N Y+ ALS+LPLF+S+RAAIRA V + + Sbjct: 244 LAFTLMDLLHHGQPLAANIVLNRYLAATPPENLDALSVLPLFMSIRAAIRAQVALARLTR 303 Query: 77 HQLDQE-IAAQAGRYFELARRLIEPEPPRLVAVGGKSGTGKSVLARDMARLIAPPPGALV 135 D+ I +A RYF+LAR LI P PRL+AVGG SGTGKS LAR +A +AP PGA+V Sbjct: 304 PDADRTGILHEAHRYFDLARALIHPPTPRLIAVGGLSGTGKSALARALAPNVAPQPGAVV 363 Query: 136 LRSDVIRKQLYHVAEHATLPPETYTPEASDRVYQAMLDRAKRAMAQGISVVLDAAFLKQA 195 LRSD+IRKQL+ V LPP TY PE + RVY+ ++ A++ +AQG S ++DA F ++ Sbjct: 364 LRSDIIRKQLFQVEHTHRLPPSTYRPEVTARVYEVLVQSARQVLAQGHSAIVDAVFASES 423 Query: 196 ERDAARAAARNAKVKFSGLFLTADQAIRLRRVASRQHDASDATAGVVLSQESIDTGHIDW 255 ER+ A AR V SGLFL AD A R R+ R DASDAT V QE + GH+DW Sbjct: 424 EREQLAAMARQCNVPLSGLFLVADLATRQARIGGRHGDASDATQEVAAQQEHYNIGHVDW 483 Query: 256 QLIDASGSPAATLQRS 271 IDASG+ TLQR Sbjct: 484 ATIDASGTQEQTLQRC 499 >ref|YP_533892.1| hypothetical protein RPC_4047 [Rhodopseudomonas palustris BisB18] gb|ABD89573.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 526 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 127/260 (48%), Positives = 166/260 (63%), Gaps = 1/260 (0%) Query: 17 LAFPLTDLLYFGRETVANRLFNSYMQNAWDTQSGALSLLPLFLSMRAAIRANVLFTKARQ 76 LAF + D +++ R A+ + N Y+ D ALS LPL +SMRAAIRANV+ ++ Q Sbjct: 255 LAFVVMDFIHYDRAAAASVVLNRYLAITSDQHLDALSALPLLMSMRAAIRANVMLSRPAQ 314 Query: 77 HQLD-QEIAAQAGRYFELARRLIEPEPPRLVAVGGKSGTGKSVLARDMARLIAPPPGALV 135 EI A YF LA RLI P PRL+A+GG SGTGKSVLAR +A IAP PGA+V Sbjct: 315 DAAHLAEIRRTAESYFTLACRLIAPPQPRLIAIGGLSGTGKSVLARSLASTIAPLPGAIV 374 Query: 136 LRSDVIRKQLYHVAEHATLPPETYTPEASDRVYQAMLDRAKRAMAQGISVVLDAAFLKQA 195 LRSDV RKQ ++V + LP E Y P+ + VY+ + RA R +AQG S ++DA F ++ Sbjct: 375 LRSDVTRKQQFNVKDTDRLPAEAYRPQVTAEVYRTLCQRAARILAQGHSAMVDAVFARED 434 Query: 196 ERDAARAAARNAKVKFSGLFLTADQAIRLRRVASRQHDASDATAGVVLSQESIDTGHIDW 255 ER A A A+V F GLFL AD A R+ RV+SR DASDATA + +Q++ D G IDW Sbjct: 435 ERRAISEVAERAQVPFDGLFLVADLATRIARVSSRIGDASDATAEIAKAQQAYDAGVIDW 494 Query: 256 QLIDASGSPAATLQRSMPCL 275 ++DA+G+P TL R+ L Sbjct: 495 TIVDAAGTPDQTLLRATEAL 514 >ref|YP_001993687.1| hypothetical protein Rpal_4721 [Rhodopseudomonas palustris TIE-1] gb|ACF03212.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] Length = 519 Score = 229 bits (583), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 132/261 (50%), Positives = 166/261 (63%), Gaps = 1/261 (0%) Query: 17 LAFPLTDLLYFGRETVANRLFNSYMQNAWDTQSGALSLLPLFLSMRAAIRANVLFTK-AR 75 LAFPL DLL++GR + + +L N Y+ ALS LPL LSMRAAIRA V+ + A Sbjct: 251 LAFPLMDLLHYGRGSDSAQLLNRYLAVTNADNLDALSTLPLLLSMRAAIRAKVMLARPAA 310 Query: 76 QHQLDQEIAAQAGRYFELARRLIEPEPPRLVAVGGKSGTGKSVLARDMARLIAPPPGALV 135 + + A A YFELA RLI P PRL+AVGG SGTGKSVLAR ++ + P PGA+V Sbjct: 311 DETIRRANRAIAESYFELALRLIAPPRPRLIAVGGLSGTGKSVLARALSSNVPPLPGAVV 370 Query: 136 LRSDVIRKQLYHVAEHATLPPETYTPEASDRVYQAMLDRAKRAMAQGISVVLDAAFLKQA 195 LRSDV RK+L+ VA+ LP YT E ++ VY+ + +RA + QG SV++DA F K Sbjct: 371 LRSDVARKRLHGVADTERLPATAYTTEVTEAVYRGLAERAAHILKQGHSVIVDAVFSKPE 430 Query: 196 ERDAARAAARNAKVKFSGLFLTADQAIRLRRVASRQHDASDATAGVVLSQESIDTGHIDW 255 ERDA + A + F GLFLTAD A R+ RVA R DASDAT +V Q+S G I W Sbjct: 431 ERDAIESVAAGLGIPFHGLFLTADLATRVARVAGRTADASDATPEIVRQQQSYAQGVIGW 490 Query: 256 QLIDASGSPAATLQRSMPCLP 276 IDA G+PA TL R++ LP Sbjct: 491 TSIDAGGTPAETLSRAVAALP 511