BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0125.0010.p (145 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767339.1| nickel responsive regulator [Bradyrhizobium jap... 232 1e-59 ref|ZP_08629095.1| nickel responsive regulator NikR [Bradyrhizob... 215 1e-54 ref|YP_004111208.1| transcriptional regulator NikR, CopG family ... 193 8e-48 ref|YP_015645.1| nickel responsive regulator [Oligotropha carbox... 192 2e-47 ref|NP_950090.1| nickel responsive regulator [Rhodopseudomonas p... 184 3e-45 >ref|NP_767339.1| nickel responsive regulator [Bradyrhizobium japonicum USDA 110] sp|Q89WI8.1|NIKR_BRAJA RecName: Full=Putative nickel-responsive regulator dbj|BAC45964.1| nickel responsive regulator [Bradyrhizobium japonicum USDA 110] Length = 148 Score = 232 bits (591), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 118/145 (81%), Positives = 130/145 (89%), Gaps = 1/145 (0%) Query: 1 MQRITITIEDDLLAEIDAAAGARGYQNRSEIIRDLARAGLQQSAEN-APSGQCVAALVYV 59 MQRITITIEDDLLAEIDAAA ARGYQNRSEIIRDLARAGLQQ++E+ A +G CVA LVYV Sbjct: 1 MQRITITIEDDLLAEIDAAAAARGYQNRSEIIRDLARAGLQQTSEDTAQTGPCVAGLVYV 60 Query: 60 YDHAARDLSKRLVQNFHGHHDLSLATLHVHLDDDSCMEVTALKGASSEVRHLADHVIAER 119 YDHAARDLSKRLVQ FHGHHDL+LATLHVHLDD++CME+TAL+GA+ EVRH ADH+IAER Sbjct: 61 YDHAARDLSKRLVQEFHGHHDLALATLHVHLDDNNCMEMTALRGAADEVRHFADHIIAER 120 Query: 120 GVRYGRVVMIPTAPDKKPRKRGHGH 144 GVRYGRVVMIPT K + R HGH Sbjct: 121 GVRYGRVVMIPTGEGKPAKARKHGH 145 >ref|ZP_08629095.1| nickel responsive regulator NikR [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08454.1| nickel responsive regulator NikR [Bradyrhizobiaceae bacterium SG-6C] Length = 151 Score = 215 bits (548), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 106/148 (71%), Positives = 123/148 (83%), Gaps = 4/148 (2%) Query: 1 MQRITITIEDDLLAEIDAAAGARGYQNRSEIIRDLARAGLQQSAENA--PSGQCVAALVY 58 MQR+TIT++DDL+AE+D GYQNRSE IRD ARAG+QQ+A++A G CVAALVY Sbjct: 1 MQRVTITLDDDLMAELDRMIEQHGYQNRSEAIRDFARAGMQQAAQDAGQTGGDCVAALVY 60 Query: 59 VYDHAARDLSKRLVQNFHGHHDLSLATLHVHLDDDSCMEVTALKGASSEVRHLADHVIAE 118 VYDHAARDLS RLV NFH HHDLSLATLHVHLD+D+CME+TALKG +SEV+HLA+HVIAE Sbjct: 61 VYDHAARDLSSRLVNNFHDHHDLSLATLHVHLDNDNCMEITALKGKTSEVQHLAEHVIAE 120 Query: 119 RGVRYGRVVMIPTAPDKKPR--KRGHGH 144 RGVRYGRVVMIPT P KP ++ H H Sbjct: 121 RGVRYGRVVMIPTDPGAKPSAARKKHSH 148 >ref|YP_004111208.1| transcriptional regulator NikR, CopG family [Rhodopseudomonas palustris DX-1] gb|ADU46475.1| transcriptional regulator NikR, CopG family [Rhodopseudomonas palustris DX-1] Length = 146 Score = 193 bits (490), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 89/145 (61%), Positives = 110/145 (75%) Query: 1 MQRITITIEDDLLAEIDAAAGARGYQNRSEIIRDLARAGLQQSAENAPSGQCVAALVYVY 60 M R+TIT++DDL+ ++DA ARGYQNRSE IRDLAR G+QQ+A SG CV A+VY Y Sbjct: 1 MHRVTITLDDDLMEKLDAIIAARGYQNRSEAIRDLARIGIQQTAAETTSGHCVGAMVYTY 60 Query: 61 DHAARDLSKRLVQNFHGHHDLSLATLHVHLDDDSCMEVTALKGASSEVRHLADHVIAERG 120 DHA RDL ++L Q+FH HHDLS AT+HVHLD D C+EVT L G +SE++H ADH+ AERG Sbjct: 61 DHAKRDLPRKLTQSFHHHHDLSRATMHVHLDHDQCLEVTILDGNASELQHFADHIFAERG 120 Query: 121 VRYGRVVMIPTAPDKKPRKRGHGHD 145 VRYGR+V IP P + R+ H HD Sbjct: 121 VRYGRLVTIPAEPPAEDREHPHEHD 145 >ref|YP_015645.1| nickel responsive regulator [Oligotropha carboxidovorans OM5] ref|YP_004638476.1| nickel responsive regulator [Oligotropha carboxidovorans OM5] gb|AEI04521.1| nickel responsive regulator [Oligotropha carboxidovorans OM4] gb|AEI08149.1| nickel responsive regulator [Oligotropha carboxidovorans OM5] Length = 151 Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 99/134 (73%), Positives = 114/134 (85%), Gaps = 1/134 (0%) Query: 1 MQRITITIEDDLLAEIDAAAGARGYQNRSEIIRDLARAGLQQSAENAP-SGQCVAALVYV 59 M+RITIT++DDLL E+D GYQNRSE IRD RAG+QQS +A S CVAALVYV Sbjct: 1 MERITITLDDDLLDEVDRMITTNGYQNRSEAIRDFVRAGIQQSRRDAGRSENCVAALVYV 60 Query: 60 YDHAARDLSKRLVQNFHGHHDLSLATLHVHLDDDSCMEVTALKGASSEVRHLADHVIAER 119 YDHAAR+LSKRLV++FHGHHDLSLATLHVHLDDD CMEVTAL+G +++V+HLA+HVIAER Sbjct: 61 YDHAARELSKRLVESFHGHHDLSLATLHVHLDDDMCMEVTALRGPTAQVQHLAEHVIAER 120 Query: 120 GVRYGRVVMIPTAP 133 GVRYGRVVMIP P Sbjct: 121 GVRYGRVVMIPAKP 134 >ref|NP_950090.1| nickel responsive regulator [Rhodopseudomonas palustris CGA009] sp|Q6N0K6.1|NIKR_RHOPA RecName: Full=Putative nickel-responsive regulator emb|CAE30196.1| Helix-turn-helix protein, CopG family [Rhodopseudomonas palustris CGA009] Length = 148 Score = 184 bits (468), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 83/133 (62%), Positives = 104/133 (78%) Query: 1 MQRITITIEDDLLAEIDAAAGARGYQNRSEIIRDLARAGLQQSAENAPSGQCVAALVYVY 60 M R+TIT++DDL+ ++DA ARGYQNRSE IRDLAR G+QQ+A SG CV A+VY Y Sbjct: 1 MHRVTITLDDDLMEKLDAIIAARGYQNRSEAIRDLARIGIQQTAAETTSGHCVGAMVYTY 60 Query: 61 DHAARDLSKRLVQNFHGHHDLSLATLHVHLDDDSCMEVTALKGASSEVRHLADHVIAERG 120 DH+ RDL ++L Q+FH HHDLS AT+HVHLD D C+EVT L G ++E++H ADH+ AERG Sbjct: 61 DHSKRDLPRKLTQSFHHHHDLSRATMHVHLDHDQCLEVTILDGNATELQHFADHIFAERG 120 Query: 121 VRYGRVVMIPTAP 133 VRYGR+V IP P Sbjct: 121 VRYGRLVTIPAEP 133