BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0124.0070.p         (195 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_444051.1| transposase number 1 of insertion sequence NGRI...   172   2e-41
ref|YP_004551796.1| Integrase catalytic protein [Sinorhizobium m...   169   2e-40
ref|YP_004538684.1| Y4rM [Novosphingobium sp. PP1Y] >gi|33393735...   154   6e-36
ref|YP_004687994.1| integrase catalytic region [Cupriavidus neca...   135   4e-30
ref|ZP_06844640.1| Integrase catalytic region [Burkholderia sp. ...   134   5e-30

>ref|NP_444051.1| transposase number 1 of insertion sequence NGRIS-23a [Sinorhizobium
           fredii NGR234]
 sp|P55646.1|Y4RM_RHISN RecName: Full=Uncharacterized protein y4rM
 gb|AAB91838.1| putative transposase number 1 of insertion sequence NGRIS-23a
           [Sinorhizobium fredii NGR234]
          Length = 350

 Score =  172 bits (436), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/129 (61%), Positives = 101/129 (78%)

Query: 5   ATIDRLLVETKIAAAGGKRRRVGFYSAVRREVPVRTFNDWHDPPPGFCEVDMVAHGGTSV 64
           AT+DRLL E ++ A GG+RRR G  SAVRR VPVRTF DW+DP PG+ EVD VAH GTS 
Sbjct: 124 ATMDRLLSEIRVVARGGQRRRAGMSSAVRRSVPVRTFGDWNDPLPGYVEVDFVAHSGTSS 183

Query: 65  AGSFIQTLTRVDVATGWTECMPLVTREGGLVVRAMERAQSLFPWGIRGADFDNGSAFMND 124
           +GSF+QT+   D+ATGWTEC+P+ TRE GLV+ A+ +A+SLFP+ ++G DFDN SAFMN+
Sbjct: 184 SGSFVQTMVLTDIATGWTECVPVRTRESGLVIAALNQARSLFPFPLQGVDFDNDSAFMNE 243

Query: 125 VVVPWSHAK 133
            VV W  ++
Sbjct: 244 RVVCWCRSQ 252


>ref|YP_004551796.1| Integrase catalytic protein [Sinorhizobium meliloti AK83]
 gb|AEG57673.1| Integrase catalytic region [Sinorhizobium meliloti AK83]
          Length = 521

 Score =  169 bits (428), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/129 (60%), Positives = 100/129 (77%)

Query: 5   ATIDRLLVETKIAAAGGKRRRVGFYSAVRREVPVRTFNDWHDPPPGFCEVDMVAHGGTSV 64
           AT+DRLL E ++ A GG+RRR G  SAVRR VPVRTF DW+DP PG+ EVD VAH GTS 
Sbjct: 118 ATMDRLLSEVRVVARGGQRRRAGMSSAVRRSVPVRTFGDWNDPLPGYVEVDFVAHSGTSS 177

Query: 65  AGSFIQTLTRVDVATGWTECMPLVTREGGLVVRAMERAQSLFPWGIRGADFDNGSAFMND 124
           +GSF QT+   D+ATGWTEC+P+ TRE GLV+ A+++A+S FP+ + G DFDN SAFMN+
Sbjct: 178 SGSFAQTMVLTDIATGWTECVPVRTRESGLVIAAIKQARSQFPFPLLGVDFDNDSAFMNE 237

Query: 125 VVVPWSHAK 133
           +VV W  ++
Sbjct: 238 LVVCWCRSQ 246


>ref|YP_004538684.1| Y4rM [Novosphingobium sp. PP1Y]
 emb|CCA90717.1| Y4rM [Novosphingobium sp. PP1Y]
          Length = 461

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 78/129 (60%), Positives = 100/129 (77%)

Query: 5   ATIDRLLVETKIAAAGGKRRRVGFYSAVRREVPVRTFNDWHDPPPGFCEVDMVAHGGTSV 64
           AT+DRLL E +I A GG+RRR G  SAVRR VPVRTF DW+DP PG+ EVD VAH GTS 
Sbjct: 124 ATMDRLLSEVRIVAGGGRRRRTGMSSAVRRSVPVRTFGDWNDPVPGYVEVDFVAHSGTSS 183

Query: 65  AGSFIQTLTRVDVATGWTECMPLVTREGGLVVRAMERAQSLFPWGIRGADFDNGSAFMND 124
           +GSF+QT+   D+ATGWTEC+P+ +R+  LVV A+++AQ LFP+ + G DFDN SAFMN+
Sbjct: 184 SGSFVQTMVLTDIATGWTECVPVRSRDSSLVVAAIQQAQRLFPFPLLGVDFDNDSAFMNE 243

Query: 125 VVVPWSHAK 133
           +VV W  ++
Sbjct: 244 LVVCWCRSQ 252


>ref|YP_004687994.1| integrase catalytic region [Cupriavidus necator N-1]
 gb|AEI81956.1| integrase catalytic region [Cupriavidus necator N-1]
          Length = 502

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 61/126 (48%), Positives = 82/126 (65%), Gaps = 1/126 (0%)

Query: 5   ATIDRLLVETKIAAAGGKRRRVGFYSAVRREVPVRTFNDWHDPPPGFCEVDMVAH-GGTS 63
           ATIDR+L   +    G ++RR G  S +RR +PVRTF DW DPPPGF E+DMV H GG+ 
Sbjct: 118 ATIDRMLANARAHIDGQRKRRTGVGSGIRRSIPVRTFADWRDPPPGFFEIDMVEHCGGSK 177

Query: 64  VAGSFIQTLTRVDVATGWTECMPLVTREGGLVVRAMERAQSLFPWGIRGADFDNGSAFMN 123
           + G F+ TLT  D+A+GWTEC+ +  R   LV+   E+A +  P+ + G D DN SAFMN
Sbjct: 178 IDGEFVHTLTLTDIASGWTECVAMRVRNQMLVIEGFEKAAADLPFAMLGVDSDNDSAFMN 237

Query: 124 DVVVPW 129
             V+ +
Sbjct: 238 QSVLDY 243


>ref|ZP_06844640.1| Integrase catalytic region [Burkholderia sp. Ch1-1]
 gb|EFG67675.1| Integrase catalytic region [Burkholderia sp. Ch1-1]
          Length = 502

 Score =  134 bits (338), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 62/126 (49%), Positives = 83/126 (65%), Gaps = 1/126 (0%)

Query: 5   ATIDRLLVETKIAAAGGKRRRVGFYSAVRREVPVRTFNDWHDPPPGFCEVDMVAH-GGTS 63
           ATIDR+L   ++   G ++RR G  SA+RR +PVRTF DW DPPPGF E+DMV H GGT 
Sbjct: 118 ATIDRMLANARLHIDGQRKRRKGVGSAIRRSIPVRTFADWRDPPPGFFEIDMVEHCGGTK 177

Query: 64  VAGSFIQTLTRVDVATGWTECMPLVTREGGLVVRAMERAQSLFPWGIRGADFDNGSAFMN 123
           V G F+ TLT  D+A+GWTEC+ +  R   LV+ A ++  +  P+ + G D DN +AFMN
Sbjct: 178 VDGEFVHTLTLTDIASGWTECVAMRRRNQVLVIEAFDKVAADLPFAMLGVDSDNDTAFMN 237

Query: 124 DVVVPW 129
             V  +
Sbjct: 238 QNVFDY 243