BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0124.0063.p         (131 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771822.1| DNA ligase [Bradyrhizobium japonicum USDA 110] ...   132   1e-29
ref|NP_771257.1| DNA ligase [Bradyrhizobium japonicum USDA 110] ...   126   9e-28
ref|NP_774344.1| DNA ligase [Bradyrhizobium japonicum USDA 110] ...   125   2e-27
ref|YP_002922715.1| putative DNA ligase [Burkholderia phage Bcep...    93   1e-17
ref|NP_771633.1| hypothetical protein blr4993 [Bradyrhizobium ja...    92   3e-17

>ref|NP_771822.1| DNA ligase [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50447.1| blr5182 [Bradyrhizobium japonicum USDA 110]
          Length = 210

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/83 (68%), Positives = 74/83 (89%)

Query: 32  GPDWIHEVKHDGHRMLVIRENERVRLLSRNGSDWTKRYPWIAEAALRNRQKRFVIDGEAV 91
           GPDWIHE+K+DG+R+ V R+ + VRL +RNG DWTKR+PWI EAAL+NR++ FVIDGEAV
Sbjct: 33  GPDWIHEIKYDGYRLRVERQGKTVRLFTRNGHDWTKRFPWIVEAALKNREQHFVIDGEAV 92

Query: 92  ILGVDGISDFNALHSGQHDHKVQ 114
           +LGVDG+SDF+ALHS +HD++VQ
Sbjct: 93  VLGVDGVSDFDALHSRRHDNEVQ 115


>ref|NP_771257.1| DNA ligase [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49882.1| bll4617 [Bradyrhizobium japonicum USDA 110]
          Length = 180

 Score =  126 bits (317), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 55/83 (66%), Positives = 72/83 (86%)

Query: 32  GPDWIHEVKHDGHRMLVIRENERVRLLSRNGSDWTKRYPWIAEAALRNRQKRFVIDGEAV 91
           GPDW+HEVK+DG+R+ + R+ +RVRL++R G +W  RYPWI EAA + RQK+FV+DGEAV
Sbjct: 18  GPDWLHEVKYDGYRLRLERDGDRVRLITRGGYNWATRYPWIVEAARKVRQKQFVLDGEAV 77

Query: 92  ILGVDGISDFNALHSGQHDHKVQ 114
           +LGVDGISDFNALHS ++DH+VQ
Sbjct: 78  VLGVDGISDFNALHSRKYDHEVQ 100


>ref|NP_774344.1| DNA ligase [Bradyrhizobium japonicum USDA 110]
 dbj|BAC52969.1| bll7704 [Bradyrhizobium japonicum USDA 110]
          Length = 195

 Score =  125 bits (313), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 70/86 (81%)

Query: 29  TAPGPDWIHEVKHDGHRMLVIRENERVRLLSRNGSDWTKRYPWIAEAALRNRQKRFVIDG 88
            + GPDW+HEVK+DG+R+ + RE  RVRL++R G +W  RYPWI EAA + RQK FV+DG
Sbjct: 15  VSSGPDWLHEVKYDGYRLRLEREGHRVRLITRGGYNWASRYPWIVEAARKVRQKHFVLDG 74

Query: 89  EAVILGVDGISDFNALHSGQHDHKVQ 114
           EAV+LGVDGISDFNALHS + DH+VQ
Sbjct: 75  EAVVLGVDGISDFNALHSRKRDHEVQ 100


>ref|YP_002922715.1| putative DNA ligase [Burkholderia phage BcepIL02]
 gb|ACR15036.1| putative DNA ligase [Burkholderia phage BcepIL02]
          Length = 262

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 56/85 (65%)

Query: 26  ARRTAPGPDWIHEVKHDGHRMLVIRENERVRLLSRNGSDWTKRYPWIAEAALRNRQKRFV 85
           AR    GPDW+HE+KHDG R   IR+  RVRLL+RN +DW+KRYP I +AA     + FV
Sbjct: 63  AREPPSGPDWLHEIKHDGFRFQAIRDGARVRLLTRNENDWSKRYPAIVDAAAALPARSFV 122

Query: 86  IDGEAVILGVDGISDFNALHSGQHD 110
           +DGE V    DG++ F  L S +HD
Sbjct: 123 LDGEVVCCDGDGLAVFELLRSRRHD 147


>ref|NP_771633.1| hypothetical protein blr4993 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50258.1| blr4993 [Bradyrhizobium japonicum USDA 110]
          Length = 159

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/97 (49%), Positives = 65/97 (67%), Gaps = 3/97 (3%)

Query: 18  ASTAAAISARRTAPGPDWIHEVKHDGHRMLVIRENERVRLLSRNGSDWTKRYPWIAEAAL 77
           +S+A     RR    P    E+K D +R+ V R  +  RL +RNG D T R+ WI +AAL
Sbjct: 11  SSSAWPPPPRRCLMAPT---EIKDDAYRLRVERNGKTARLFTRNGHDRTTRFFWIVQAAL 67

Query: 78  RNRQKRFVIDGEAVILGVDGISDFNALHSGQHDHKVQ 114
           +NR+++FVIDG AV+ GVDG+SDFNA HS  HD++VQ
Sbjct: 68  KNREQQFVIDGGAVVHGVDGVSDFNAQHSRWHDNEVQ 104