BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0124.0062.p         (120 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_773348.1| hypothetical protein bll6708 [Bradyrhizobium ja...   122   2e-26
ref|ZP_08630340.1| hypothetical protein CSIRO_3446 [Bradyrhizobi...    84   9e-15
ref|YP_532229.1| hypothetical protein RPC_2357 [Rhodopseudomonas...    83   1e-14
ref|YP_781327.1| hypothetical protein RPE_2408 [Rhodopseudomonas...    80   7e-14
ref|YP_001243313.1| hypothetical protein BBta_7560 [Bradyrhizobi...    74   8e-12

>ref|NP_773348.1| hypothetical protein bll6708 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC51973.1| bll6708 [Bradyrhizobium japonicum USDA 110]
          Length = 171

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/116 (53%), Positives = 84/116 (72%), Gaps = 4/116 (3%)

Query: 1   MYVAAALMRLEHELFGSVWFILLLMLYGAFSFYIGIDLPRHRAQ----GLPEERSHTDAA 56
           +YV A L+R    LF S W +L+  LYGA S+Y+GIDL R  A+     L EE + ++A 
Sbjct: 48  LYVGATLLRQRDGLFESGWIVLMTTLYGALSYYVGIDLSRSVARKSISSLSEEYTGSEAV 107

Query: 57  EIFSAAGTFIAAIAAFLSVSMIVVDQVVSHGSIVVIAGCWAIGSSVQIAAGTIARN 112
           EI SAAGTF+AAIAA LSVS++V+DQ + +G I  +AGCW +GSS+Q+AAGT+AR+
Sbjct: 108 EIMSAAGTFVAAIAATLSVSILVLDQNLPNGLIGFVAGCWVVGSSLQVAAGTMARS 163


>ref|ZP_08630340.1| hypothetical protein CSIRO_3446 [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP06719.1| hypothetical protein CSIRO_3446 [Bradyrhizobiaceae bacterium SG-6C]
          Length = 158

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 66/119 (55%), Gaps = 8/119 (6%)

Query: 1   MYVAAALMRLEHELFGSVWFILLLMLYGAFSFYIGIDLPRHRAQGL--------PEERSH 52
           ++VAA +     E   SV   L LM+ GA  FY+GID+P HR   L         E    
Sbjct: 36  LFVAAQVSNARIETLSSVGMSLALMVLGAIGFYLGIDVPPHRNARLHLLRNGSTSEAPPT 95

Query: 53  TDAAEIFSAAGTFIAAIAAFLSVSMIVVDQVVSHGSIVVIAGCWAIGSSVQIAAGTIAR 111
           TD  E+ S+AGTF+AAI AF+SV  IV D   S   +V++A  W +G  +QI AGT AR
Sbjct: 96  TDPVELLSSAGTFLAAIVAFMSVYAIVTDAETSTTVLVLLAIGWLVGVVIQIVAGTTAR 154


>ref|YP_532229.1| hypothetical protein RPC_2357 [Rhodopseudomonas palustris BisB18]
 gb|ABD87910.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 169

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 74/115 (64%), Gaps = 5/115 (4%)

Query: 1   MYVAAALMRLEHELFGSVWFILLLMLYGAFSFYIGIDLPRH----RAQGLPEERSHTDAA 56
           ++VAA ++R   E+ GS    L ++L+GA  FY+GIDLP       A   P   + TD+ 
Sbjct: 48  LFVAANMIRTNVEM-GSGAAALAMLLFGAIGFYLGIDLPPPLHDPDAPPPPGHLARTDSV 106

Query: 57  EIFSAAGTFIAAIAAFLSVSMIVVDQVVSHGSIVVIAGCWAIGSSVQIAAGTIAR 111
           E+FSA GTF++A+AA +SV +IVVD+ +    +++I   W IGS +Q+AAG IAR
Sbjct: 107 ELFSATGTFLSALAAVISVYVIVVDERLHLAVVLLIGLAWLIGSIMQVAAGVIAR 161


>ref|YP_781327.1| hypothetical protein RPE_2408 [Rhodopseudomonas palustris BisA53]
 gb|ABJ06347.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
          Length = 156

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/116 (43%), Positives = 73/116 (62%), Gaps = 7/116 (6%)

Query: 1   MYVAAALMRLEHELFGSVWFILLLMLYGAFSFYIGIDLPR--HRAQGLPEERSH---TDA 55
           ++VAA L+R   E+ GS    L + L+G   FY+GIDLP   H     P   +H   TD 
Sbjct: 35  LFVAAHLIRSNIEM-GSGVGALAMTLFGGIGFYLGIDLPPPLHDPDA-PPPVAHVVKTDM 92

Query: 56  AEIFSAAGTFIAAIAAFLSVSMIVVDQVVSHGSIVVIAGCWAIGSSVQIAAGTIAR 111
            E+ SAAGTF+AA+ A  SV +IVVD+ + HG ++++A  W  G+++Q+AAG IAR
Sbjct: 93  VELLSAAGTFLAAVTAVSSVYLIVVDERLWHGLVLMMALLWTAGTTMQVAAGLIAR 148


>ref|YP_001243313.1| hypothetical protein BBta_7560 [Bradyrhizobium sp. BTAi1]
 gb|ABQ39407.1| putative membrane protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 141

 Score = 73.9 bits (180), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 58/96 (60%), Gaps = 5/96 (5%)

Query: 20  FILLLMLYGAFSFYIGIDLPR----HRAQGLPEERSHTDAAEIFSAAGTFIAAIAAFLSV 75
           F+LL+M+ GAF FY+GID P+       +G P ER   DAAE  SA GTF+A + AF +V
Sbjct: 44  FLLLMMVSGAFGFYLGIDTPQIPFHPHEEGTPAERK-IDAAEFLSAVGTFLATLTAFFAV 102

Query: 76  SMIVVDQVVSHGSIVVIAGCWAIGSSVQIAAGTIAR 111
            +I++ +        +I   W IG  +QI AGTIAR
Sbjct: 103 GIIILREDPHIVWTSLIMAGWVIGVVMQIVAGTIAR 138