BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0124.0057.p         (127 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_487645.1| response regulator receiver domain-containing p...   128   2e-28
ref|YP_004110328.1| response regulator receiver [Rhodopseudomona...   124   5e-27
ref|YP_001990671.1| response regulator receiver protein [Rhodops...   123   8e-27
ref|NP_946829.1| CheY-like response regulator receiver [Rhodopse...   123   1e-26
ref|YP_570918.1| response regulator receiver [Rhodopseudomonas p...   122   2e-26

>ref|YP_487645.1| response regulator receiver domain-containing protein
           [Rhodopseudomonas palustris HaA2]
 gb|ABD08734.1| response regulator receiver domain protein [Rhodopseudomonas
           palustris HaA2]
          Length = 124

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/99 (63%), Positives = 74/99 (74%)

Query: 11  VVLVVEDEMMLRMRAVDMVEDAGYTPLEALDTDEAVAILESRSDIALMCTDIQLPGSMDG 70
           VVLVVEDE +LRM A+DM+EDAG+  LEA + D+A+AILE R DI ++ TDIQ+PGSMDG
Sbjct: 10  VVLVVEDEALLRMNAIDMIEDAGFEVLEASNADDAIAILEGRDDIRVVFTDIQMPGSMDG 69

Query: 71  LGLARTVHKRWPAIKIILVSGHLNPSSIDLPPCSRFFGK 109
           L LAR V  RWP IKII  SG +N SS DLP   RF  K
Sbjct: 70  LKLARAVRGRWPPIKIIATSGRVNVSSTDLPDGGRFLAK 108


>ref|YP_004110328.1| response regulator receiver [Rhodopseudomonas palustris DX-1]
 gb|ADU45595.1| response regulator receiver [Rhodopseudomonas palustris DX-1]
          Length = 120

 Score =  124 bits (311), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 67/120 (55%), Positives = 81/120 (67%), Gaps = 1/120 (0%)

Query: 5   LSRSPAVVLVVEDEMMLRMRAVDMVEDAGYTPLEALDTDEAVAILESRSDIALMCTDIQL 64
           +SR P VVLVVEDE +LRM AVDM+E  G+  LEA   D A+AILE R D+ L+ TDIQ+
Sbjct: 1   MSRRP-VVLVVEDEPLLRMNAVDMIEAEGFEVLEAGSADVAIAILEDRDDVRLVFTDIQI 59

Query: 65  PGSMDGLGLARTVHKRWPAIKIILVSGHLNPSSIDLPPCSRFFGKSLQAWQIIAELRSMI 124
           PGSMDGL LAR V  RWP IKI+  SG +N +  +LP   RF  K   + QI A LR M+
Sbjct: 60  PGSMDGLKLARAVRGRWPPIKIVATSGRVNVTPTELPDGGRFVPKPYTSAQITALLREML 119


>ref|YP_001990671.1| response regulator receiver protein [Rhodopseudomonas palustris
           TIE-1]
 gb|ACF00196.1| response regulator receiver protein [Rhodopseudomonas palustris
           TIE-1]
          Length = 131

 Score =  123 bits (309), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 67/121 (55%), Positives = 81/121 (66%), Gaps = 1/121 (0%)

Query: 4   DLSRSPAVVLVVEDEMMLRMRAVDMVEDAGYTPLEALDTDEAVAILESRSDIALMCTDIQ 63
           ++SR P VVLVVEDE +LRM AVDM+E AG+  LEA   D+A+ +LE R DI L+ TDIQ
Sbjct: 11  EVSRGP-VVLVVEDEPLLRMNAVDMIEAAGFHVLEAGSADDAIEVLEKRDDICLVFTDIQ 69

Query: 64  LPGSMDGLGLARTVHKRWPAIKIILVSGHLNPSSIDLPPCSRFFGKSLQAWQIIAELRSM 123
           +PGSMDGL LAR V  RWP IKII  SG +  ++ DLP   RF  K     QI   LR M
Sbjct: 70  IPGSMDGLKLARAVRGRWPPIKIITTSGRVQVAADDLPDGGRFVPKPYTQAQITGLLREM 129

Query: 124 I 124
           +
Sbjct: 130 L 130


>ref|NP_946829.1| CheY-like response regulator receiver [Rhodopseudomonas palustris
           CGA009]
 emb|CAE26923.1| response regulator receiver (CheY-like protein) [Rhodopseudomonas
           palustris CGA009]
          Length = 120

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/120 (55%), Positives = 80/120 (66%), Gaps = 1/120 (0%)

Query: 5   LSRSPAVVLVVEDEMMLRMRAVDMVEDAGYTPLEALDTDEAVAILESRSDIALMCTDIQL 64
           +SR P VVLVVEDE +LRM AVDM+E AG+  LEA   D+A+ +LE R DI L+ TDIQ+
Sbjct: 1   MSRGP-VVLVVEDEPLLRMNAVDMIEAAGFHVLEAGSADDAIEVLEKRDDICLVFTDIQI 59

Query: 65  PGSMDGLGLARTVHKRWPAIKIILVSGHLNPSSIDLPPCSRFFGKSLQAWQIIAELRSMI 124
           PGSMDGL LAR V  RWP IKII  SG +  ++ DLP   RF  K     QI   LR M+
Sbjct: 60  PGSMDGLKLARAVRGRWPPIKIITTSGRVQVAADDLPDGGRFVPKPYTQAQITGLLREML 119


>ref|YP_570918.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
 gb|ABE41017.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
          Length = 124

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/122 (52%), Positives = 82/122 (67%)

Query: 3   PDLSRSPAVVLVVEDEMMLRMRAVDMVEDAGYTPLEALDTDEAVAILESRSDIALMCTDI 62
           PDL     VVLVVEDE +LRM AVD+VE+AG+  +EA + D+A+AILESR+DI ++ TD+
Sbjct: 2   PDLLSKRPVVLVVEDEPLLRMNAVDIVEEAGFEVIEAGNADDAIAILESRNDIRVVFTDV 61

Query: 63  QLPGSMDGLGLARTVHKRWPAIKIILVSGHLNPSSIDLPPCSRFFGKSLQAWQIIAELRS 122
           Q+PGSMDGL LAR V  RWP I+II  SG +  S  DLP   +F  K     Q+   L  
Sbjct: 62  QIPGSMDGLKLARAVRGRWPPIQIIATSGRVKVSGADLPDGGQFLAKPYTPSQVARVLIQ 121

Query: 123 MI 124
           +I
Sbjct: 122 LI 123