BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0124.0056.p (258 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773823.1| hypothetical protein bll7183 [Bradyrhizobium ja... 397 e-108 ref|YP_576458.1| signal transduction histidine kinase [Nitrobact... 375 e-102 ref|YP_530507.1| signal transduction histidine kinase [Rhodopseu... 359 2e-97 ref|YP_001238266.1| putative signal transduction histidine kinas... 334 6e-90 ref|YP_782564.1| signal transduction histidine kinase [Rhodopseu... 330 1e-88 >ref|NP_773823.1| hypothetical protein bll7183 [Bradyrhizobium japonicum USDA 110] dbj|BAC52448.1| bll7183 [Bradyrhizobium japonicum USDA 110] Length = 264 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 193/256 (75%), Positives = 223/256 (87%) Query: 1 MLEVDLRTDKRPGGAEFRQDFLAAENVSLRLLLAQAEINTRSLLAKAGIDAKEREGSDKL 60 MLE+DLRT + GG E +D LAAENVSLRLLLAQAEINTR LLA+AGIDA+ERE S+KL Sbjct: 6 MLEIDLRTGQHLGGGESHEDALAAENVSLRLLLAQAEINTRGLLARAGIDARERETSEKL 65 Query: 61 QKLILEELHHRIKNTLATVAAIVSQSLRNLQGVEHAQRAIEGRLLALGRAHDLLLQAKWS 120 QKLILEELHHRIKNTLATV+AIVSQSLR QG+ HAQ+AI GRLLALGRAHDLL++A S Sbjct: 66 QKLILEELHHRIKNTLATVSAIVSQSLRGEQGLAHAQQAIAGRLLALGRAHDLLVRASLS 125 Query: 121 SADLGTVVRSAIEAFDNPDESKFSITGPDIRLASGAVIAVAMTLNELCTNTTKFGALSVP 180 SADLG VVRSA+EAFD+P ESKFSI+GPD+R+ S AV+AVAMTLNELCTN TK+GA S P Sbjct: 126 SADLGAVVRSAVEAFDDPAESKFSISGPDLRINSAAVVAVAMTLNELCTNATKYGAFSAP 185 Query: 181 EGRVDIIWTVDQATQRLHLTWTEKNGPIVQPPAKRSFGTRLIETLGKQLRGDVQLTYAST 240 +G VD+ WT+D TQRL LTW EKNGP++Q AKRSFGTRLIETLG++L+GDVQLTYA Sbjct: 186 KGCVDLHWTIDPQTQRLRLTWIEKNGPVIQSRAKRSFGTRLIETLGRELQGDVQLTYAER 245 Query: 241 GFSYTFEAPIAALSTP 256 GF+YTF+AP+A+LS P Sbjct: 246 GFAYTFDAPLASLSVP 261 >ref|YP_576458.1| signal transduction histidine kinase [Nitrobacter hamburgensis X14] gb|ABE61998.1| signal transduction histidine kinase [Nitrobacter hamburgensis X14] Length = 275 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 184/258 (71%), Positives = 212/258 (82%), Gaps = 3/258 (1%) Query: 1 MLEVDL--RTDKRP-GGAEFRQDFLAAENVSLRLLLAQAEINTRSLLAKAGIDAKEREGS 57 M E D R +++P GA DFL AEN+SLRLLLAQAEI+ + LLA+AGIDA+ER+ S Sbjct: 7 MFETDRYRRLERQPSNGAARPHDFLEAENISLRLLLAQAEIDAQGLLAQAGIDARERDAS 66 Query: 58 DKLQKLILEELHHRIKNTLATVAAIVSQSLRNLQGVEHAQRAIEGRLLALGRAHDLLLQA 117 DKLQKLILEELHHRIKNTLATV+AI +QSLR++QG EHAQ AI GRL ALGRAHDLLLQA Sbjct: 67 DKLQKLILEELHHRIKNTLATVSAIATQSLRHVQGTEHAQHAIAGRLQALGRAHDLLLQA 126 Query: 118 KWSSADLGTVVRSAIEAFDNPDESKFSITGPDIRLASGAVIAVAMTLNELCTNTTKFGAL 177 +W+SADL +VRSA EAFDNPD KFSI GPDI+ SGAVIA+AMTLNELCTN+TKFGAL Sbjct: 127 RWNSADLSHIVRSATEAFDNPDVPKFSIAGPDIQTTSGAVIAIAMTLNELCTNSTKFGAL 186 Query: 178 SVPEGRVDIIWTVDQATQRLHLTWTEKNGPIVQPPAKRSFGTRLIETLGKQLRGDVQLTY 237 S P GRVDI WT+D TQR+HLTWTE NGP+V P SFGTRLIETLGKQL+GDVQLTY Sbjct: 187 SEPTGRVDIAWTLDPKTQRVHLTWTEMNGPVVHAPENHSFGTRLIETLGKQLKGDVQLTY 246 Query: 238 ASTGFSYTFEAPIAALST 255 TGF Y + P+A+L++ Sbjct: 247 QPTGFVYAIDVPLASLTS 264 >ref|YP_530507.1| signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] gb|ABD86188.1| signal transduction histidine kinase [Rhodopseudomonas palustris BisB18] Length = 258 Score = 359 bits (922), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 177/256 (69%), Positives = 204/256 (79%), Gaps = 1/256 (0%) Query: 1 MLEVDLRTDKRPGGAEFR-QDFLAAENVSLRLLLAQAEINTRSLLAKAGIDAKEREGSDK 59 M E+DLR D + QD L AENVSLRLLLAQAEIN + LL +AGIDAK+RE + K Sbjct: 1 MFEIDLRPDALDQATQTPPQDILEAENVSLRLLLAQAEINAQELLEQAGIDAKQREAAAK 60 Query: 60 LQKLILEELHHRIKNTLATVAAIVSQSLRNLQGVEHAQRAIEGRLLALGRAHDLLLQAKW 119 LQKLILEELHHRIKNTLATV+AI SQSLRN EHAQ+AIEGRLLALGRAHDLLLQA+W Sbjct: 61 LQKLILEELHHRIKNTLATVSAIASQSLRNATSTEHAQQAIEGRLLALGRAHDLLLQAQW 120 Query: 120 SSADLGTVVRSAIEAFDNPDESKFSITGPDIRLASGAVIAVAMTLNELCTNTTKFGALSV 179 +SADLG V+R A EAFDN D +KFSI GPDIR+ SGAVIA+AMTLNELCTNTTKFGALS Sbjct: 121 TSADLGKVIRGATEAFDNRDAAKFSIAGPDIRMNSGAVIAIAMTLNELCTNTTKFGALSA 180 Query: 180 PEGRVDIIWTVDQATQRLHLTWTEKNGPIVQPPAKRSFGTRLIETLGKQLRGDVQLTYAS 239 P G VDI W +D A RLHLTW+E+ GP VQ P +RSFG RLIETLG+QL+G+V L+Y Sbjct: 181 PAGHVDIAWALDDAGHRLHLTWSERGGPPVQAPTRRSFGKRLIETLGRQLKGEVTLSYPP 240 Query: 240 TGFSYTFEAPIAALST 255 GF Y + P+ +L++ Sbjct: 241 EGFIYVIDVPLESLTS 256 >ref|YP_001238266.1| putative signal transduction histidine kinase [Bradyrhizobium sp. BTAi1] gb|ABQ34360.1| putative signal transduction histidine kinase [Bradyrhizobium sp. BTAi1] Length = 411 Score = 334 bits (857), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 164/257 (63%), Positives = 199/257 (77%) Query: 1 MLEVDLRTDKRPGGAEFRQDFLAAENVSLRLLLAQAEINTRSLLAKAGIDAKEREGSDKL 60 ML++DL T G DFL E L+ LLA+AE N ++LL KA I+A+ERE L Sbjct: 20 MLKIDLTTKAHLHGTVVDPDFLVREIRGLKRLLAEAESNAKALLDKAEIEAREREVVGGL 79 Query: 61 QKLILEELHHRIKNTLATVAAIVSQSLRNLQGVEHAQRAIEGRLLALGRAHDLLLQAKWS 120 Q+LILEEL HRIKNTLATV AIVSQSL L + AQ AI GRL ALGRAHDLLLQA+WS Sbjct: 80 QRLILEELQHRIKNTLATVGAIVSQSLSGLPAAKDAQHAISGRLQALGRAHDLLLQARWS 139 Query: 121 SADLGTVVRSAIEAFDNPDESKFSITGPDIRLASGAVIAVAMTLNELCTNTTKFGALSVP 180 SADLGTV+R++I+AFD+PD S+FSI GP++ + S A++ +AMTLNELCTN KFGALSVP Sbjct: 140 SADLGTVIRNSIQAFDDPDVSRFSILGPEVPVTSNAIVVMAMTLNELCTNALKFGALSVP 199 Query: 181 EGRVDIIWTVDQATQRLHLTWTEKNGPIVQPPAKRSFGTRLIETLGKQLRGDVQLTYAST 240 GR+D++WT+D+ Q LHL WTE++GP VQ PA RSFGTRLIETLG Q G+VQL+Y T Sbjct: 200 TGRIDLVWTIDRPKQHLHLVWTERDGPTVQEPASRSFGTRLIETLGMQFGGEVQLSYPPT 259 Query: 241 GFSYTFEAPIAALSTPA 257 GFSYTF+API AL++PA Sbjct: 260 GFSYTFDAPITALNSPA 276 >ref|YP_782564.1| signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] gb|ABJ07584.1| signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] Length = 250 Score = 330 bits (847), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 159/237 (67%), Positives = 194/237 (81%) Query: 19 QDFLAAENVSLRLLLAQAEINTRSLLAKAGIDAKEREGSDKLQKLILEELHHRIKNTLAT 78 ++ LAAENVSLRLLL QAEI+ R+LLA+AGID +ER+ +D+LQKLILEELHHRI+NTLAT Sbjct: 10 RESLAAENVSLRLLLEQAEIDARALLAQAGIDERERDAADRLQKLILEELHHRIQNTLAT 69 Query: 79 VAAIVSQSLRNLQGVEHAQRAIEGRLLALGRAHDLLLQAKWSSADLGTVVRSAIEAFDNP 138 V AI SQSLRN +EHA+ AIEGRL ALGRAH+LLLQA+W+SA L V+R+A EAFDN Sbjct: 70 VGAIASQSLRNASSIEHAKTAIEGRLQALGRAHNLLLQAQWTSALLEMVIRTATEAFDNA 129 Query: 139 DESKFSITGPDIRLASGAVIAVAMTLNELCTNTTKFGALSVPEGRVDIIWTVDQATQRLH 198 D + SI GPD++++S AVIA+AMT NELCTNTTKFGALSVP G +D+ WTVD+++QR+ Sbjct: 130 DLHRVSIEGPDVQMSSAAVIAMAMTFNELCTNTTKFGALSVPGGHIDVDWTVDKSSQRVR 189 Query: 199 LTWTEKNGPIVQPPAKRSFGTRLIETLGKQLRGDVQLTYASTGFSYTFEAPIAALST 255 L W E+ GP V P +RSFGTRLIETLGKQLRG V+L Y TGF Y + PIA+L + Sbjct: 190 LNWKERGGPPVHAPIRRSFGTRLIETLGKQLRGRVELCYDPTGFVYRLDVPIASLKS 246