BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0124.0046.p         (86 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001238266.1| putative signal transduction histidine kinas...   144   5e-33
ref|NP_771786.1| hypothetical protein bll5146 [Bradyrhizobium ja...   135   2e-30

>ref|YP_001238266.1| putative signal transduction histidine kinase [Bradyrhizobium sp.
           BTAi1]
 gb|ABQ34360.1| putative signal transduction histidine kinase [Bradyrhizobium sp.
           BTAi1]
          Length = 411

 Score =  144 bits (362), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 67/85 (78%), Positives = 75/85 (88%)

Query: 1   MDVWADSIEHRGGRQSLFRDQYNALGRLNLPALQRIVSAKYRRGAAFNRQHPFVEVLFSD 60
           MD+WA+ IEH GGRQSLFR QYNALG+ NL AL RIVSAKY+RGAA NRQHPFVEVLFSD
Sbjct: 326 MDIWAEQIEHAGGRQSLFRSQYNALGKRNLAALARIVSAKYQRGAAANRQHPFVEVLFSD 385

Query: 61  IADSGEALDLSELVRKTLPPAFHRM 85
           IA+SGE LDLS+LVR  LPP+FHR+
Sbjct: 386 IAESGETLDLSQLVRAPLPPSFHRL 410


>ref|NP_771786.1| hypothetical protein bll5146 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50411.1| bll5146 [Bradyrhizobium japonicum USDA 110]
          Length = 123

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/86 (72%), Positives = 73/86 (84%)

Query: 1   MDVWADSIEHRGGRQSLFRDQYNALGRLNLPALQRIVSAKYRRGAAFNRQHPFVEVLFSD 60
           MD+W  S+ HR G+QSLFR QYNALG+LNL +++RIVSAKY+ G   NRQHPFVEVL SD
Sbjct: 38  MDIWVASVAHRVGKQSLFRGQYNALGKLNLASIERIVSAKYQLGVTLNRQHPFVEVLVSD 97

Query: 61  IADSGEALDLSELVRKTLPPAFHRMA 86
           I +SGEALDLSELVR+ LPPAFHR+A
Sbjct: 98  IEESGEALDLSELVREPLPPAFHRLA 123