BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0124.0042.p         (173 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002974462.1| PAS/PAC sensor signal transduction histidine...   128   4e-28
ref|YP_766610.1| two-component regulator sensor histidine kinase...   127   5e-28
ref|YP_676609.1| putative PAS/PAC sensor protein [Mesorhizobium ...   127   6e-28
ref|YP_003410758.1| putative PAS/PAC sensor protein [Geodermatop...   115   3e-24
ref|ZP_04587348.1| PAS protein [Pseudomonas syringae pv. oryzae ...   100   5e-20

>ref|YP_002974462.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gb|ACS54923.1| PAS/PAC sensor signal transduction histidine kinase [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 379

 Score =  128 bits (321), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 58/111 (52%), Positives = 78/111 (70%)

Query: 8   FKDMIDNAPCGYVTLQPNGRIEYVNLTFLEWSGLTAPQMIGKRFSDFLTMPGRIYYETHI 67
            +D+ +NAPCGY++LQP+GRI  VN T   W G+ A Q++GKR  D L   GRI+YETH 
Sbjct: 15  LEDLYENAPCGYLSLQPDGRIVKVNRTLSTWIGIPAEQLLGKRLHDLLNTSGRIFYETHF 74

Query: 68  APLLRMQGSFDEFAIDVLTAAGTPLQMIANANERRDPEGRLLLIRLALIKA 118
           APLLRMQG F+E A+D++T  G  L ++ANA ERR  +G LL  R+ + +A
Sbjct: 75  APLLRMQGFFNEVALDLVTVDGRKLPVLANAVERRAEDGALLFTRVTMFQA 125


>ref|YP_766610.1| two-component regulator sensor histidine kinase protein [Rhizobium
           leguminosarum bv. viciae 3841]
 emb|CAK06496.1| putative two-component regulator sensor histidine kinase protein
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 379

 Score =  127 bits (319), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 58/111 (52%), Positives = 78/111 (70%)

Query: 8   FKDMIDNAPCGYVTLQPNGRIEYVNLTFLEWSGLTAPQMIGKRFSDFLTMPGRIYYETHI 67
            +D+ +NAPCGY++LQP+GRI  VN T   W G+ A Q++GKR  D L   GRI+YETH 
Sbjct: 15  LEDLYENAPCGYLSLQPDGRIVKVNRTLSTWIGIPAEQLLGKRLHDLLNTSGRIFYETHF 74

Query: 68  APLLRMQGSFDEFAIDVLTAAGTPLQMIANANERRDPEGRLLLIRLALIKA 118
           APLLRMQG F+E A+D++ A G  L ++ANA ERR  +G LL  R+ + +A
Sbjct: 75  APLLRMQGFFNEVALDLVAADGRKLPVLANAVERRAEDGALLFTRVTMFQA 125


>ref|YP_676609.1| putative PAS/PAC sensor protein [Mesorhizobium sp. BNC1]
 gb|ABG65444.1| putative PAS/PAC sensor protein [Chelativorans sp. BNC1]
          Length = 135

 Score =  127 bits (319), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 60/123 (48%), Positives = 84/123 (68%), Gaps = 1/123 (0%)

Query: 7   QFKDMIDNAPCGYVTLQPNGRIEYVNLTFLEWSGLTAPQMIGKRFSDFLTMPGRIYYETH 66
             +D+ +NAPCGY++  P+GRI   NLTF +W G    + +G+RF DFL + G+IYYETH
Sbjct: 13  DLEDLFENAPCGYISAGPDGRITKANLTFAKWLGRDRGEFVGRRFQDFLNIAGKIYYETH 72

Query: 67  IAPLLRMQGSFDEFAIDVLTAAGTPLQMIANANERRDPEGRLLLIRLALI-KAGSAALRA 125
            APL+RMQG F+E A+D++ A GT L ++ NA ERRD  G+L LIR+ +  +     LRA
Sbjct: 73  FAPLMRMQGFFNEVALDLVRADGTLLPVLVNAVERRDDTGKLRLIRITIFQRVRPPPLRA 132

Query: 126 RAS 128
           R +
Sbjct: 133 RVA 135


>ref|YP_003410758.1| putative PAS/PAC sensor protein [Geodermatophilus obscurus DSM
           43160]
 gb|ADB76387.1| putative PAS/PAC sensor protein [Geodermatophilus obscurus DSM
           43160]
          Length = 757

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/111 (48%), Positives = 73/111 (65%)

Query: 10  DMIDNAPCGYVTLQPNGRIEYVNLTFLEWSGLTAPQMIGKRFSDFLTMPGRIYYETHIAP 69
           D+ +NAPCGY +  P+G++   N TF EW G    ++IG RF + L + GR+YYETH+AP
Sbjct: 26  DLYENAPCGYFSALPDGQLVKANRTFCEWIGRPVGELIGVRFQELLNIGGRVYYETHLAP 85

Query: 70  LLRMQGSFDEFAIDVLTAAGTPLQMIANANERRDPEGRLLLIRLALIKAGS 120
           LLRMQG   E A+DV+ A G+ L  + NA E RDP G  LL+R  + +A S
Sbjct: 86  LLRMQGMVREVALDVVRADGSLLPCLLNAVEVRDPRGAPLLVRATVFEATS 136


>ref|ZP_04587348.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
 gb|EGI01798.1| PAS protein [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 181

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 64/103 (62%)

Query: 6   PQFKDMIDNAPCGYVTLQPNGRIEYVNLTFLEWSGLTAPQMIGKRFSDFLTMPGRIYYET 65
           P  +D+ ++A CG V   PNG IE VNLTF  W GL    ++G+RF D L + G+++ +T
Sbjct: 9   PLTEDLYEHAACGLVVTLPNGTIERVNLTFCRWLGLEREAVVGRRFQDLLNLAGKVFLQT 68

Query: 66  HIAPLLRMQGSFDEFAIDVLTAAGTPLQMIANANERRDPEGRL 108
           H APLL+ QGS  E  +++L A G P+ M+ NA  R  P G L
Sbjct: 69  HWAPLLQSQGSIAEVKVELLHADGHPVPMMLNAVRREYPSGFL 111