BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0124.0036.p (225 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768884.1| cAMP-regulatory protein [Bradyrhizobium japonic... 329 2e-88 ref|YP_534252.1| Crp/FNR family transcriptional regulator [Rhodo... 317 8e-85 ref|YP_782565.1| Crp/FNR family transcriptional regulator [Rhodo... 288 5e-76 ref|YP_568879.1| cyclic nucleotide-binding protein [Rhodopseudom... 280 2e-73 ref|YP_781752.1| Crp/FNR family transcriptional regulator [Rhodo... 274 7e-72 >ref|NP_768884.1| cAMP-regulatory protein [Bradyrhizobium japonicum USDA 110] dbj|BAC47509.1| bll2244 [Bradyrhizobium japonicum USDA 110] Length = 225 Score = 329 bits (844), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 169/225 (75%), Positives = 193/225 (85%) Query: 1 LAKPAKDKFDPKTFLAKVGEGKSISKLGKGQNVFVQGDVADAVFYIQKGKIKLTVVSDQG 60 + K AK FDPK FLAKVGEGK+I K K Q VF QGD AD VFYIQKG+IK+ VVS+QG Sbjct: 1 MLKAAKSSFDPKLFLAKVGEGKAILKFDKNQVVFSQGDAADTVFYIQKGRIKVLVVSEQG 60 Query: 61 KEAVVGMLEPGQFFGEGCLNGQPLRIATTTAMEDSIITRISKLAMISALEGRPKFSQLFM 120 KEAVVG++EPGQFFGEGCLNG PLRI+TT AME ++T I+K AM++ L+G PKFS+LFM Sbjct: 61 KEAVVGIMEPGQFFGEGCLNGHPLRISTTVAMEQCLVTSIAKSAMLAILKGEPKFSELFM 120 Query: 121 AYLLTRNSRIEEDLIDQLFNSSEKRLARLLLLLANFGKESSPQPIGVKISQETLAEMIGA 180 YLL+RNSRIEEDLIDQLFNSSEKRLARLLLLLANFGK+ + QPI ++SQETLAEMIG Sbjct: 121 EYLLSRNSRIEEDLIDQLFNSSEKRLARLLLLLANFGKDGATQPITAQVSQETLAEMIGT 180 Query: 181 TRSRVSFFMNKFRRLGFISYNGKIEVHSSLLNAVLIEKSELGRKD 225 TRSRVSFFMNKFR+LGFI+YNGKIEVHSSLLNAVL +K E+ R D Sbjct: 181 TRSRVSFFMNKFRKLGFITYNGKIEVHSSLLNAVLYDKPEIVRDD 225 >ref|YP_534252.1| Crp/FNR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gb|ABD89933.1| transcriptional regulator, Crp/Fnr family [Rhodopseudomonas palustris BisB18] Length = 225 Score = 317 bits (812), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 165/224 (73%), Positives = 189/224 (84%) Query: 1 LAKPAKDKFDPKTFLAKVGEGKSISKLGKGQNVFVQGDVADAVFYIQKGKIKLTVVSDQG 60 L + KD FD K FLA VG GK+I + K Q V+VQGD A+AVFYIQKG+IKLTV+S+QG Sbjct: 2 LERAVKDTFDSKAFLAGVGAGKAILEFRKNQTVYVQGDAANAVFYIQKGRIKLTVLSEQG 61 Query: 61 KEAVVGMLEPGQFFGEGCLNGQPLRIATTTAMEDSIITRISKLAMISALEGRPKFSQLFM 120 KEAVV ++EPGQFFGEGCLNG R+ATT AME+S++T I+K AM+ L +PKFS+LFM Sbjct: 62 KEAVVAIMEPGQFFGEGCLNGHSHRMATTVAMEESLVTSITKEAMLRTLHDQPKFSELFM 121 Query: 121 AYLLTRNSRIEEDLIDQLFNSSEKRLARLLLLLANFGKESSPQPIGVKISQETLAEMIGA 180 AYLLTRNSRIEEDLIDQLFNSSEKRLARLLLLLANFGKE +PQPI ISQETLAEMIG Sbjct: 122 AYLLTRNSRIEEDLIDQLFNSSEKRLARLLLLLANFGKEGNPQPITPHISQETLAEMIGT 181 Query: 181 TRSRVSFFMNKFRRLGFISYNGKIEVHSSLLNAVLIEKSELGRK 224 TRSRVSFFMNKFR+LG ISYNGKIEV+SSLLNAVL +K + R+ Sbjct: 182 TRSRVSFFMNKFRKLGLISYNGKIEVNSSLLNAVLHDKPHIERE 225 >ref|YP_782565.1| Crp/FNR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gb|ABJ07585.1| transcriptional regulator, Crp/Fnr family [Rhodopseudomonas palustris BisA53] Length = 232 Score = 288 bits (736), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 148/218 (67%), Positives = 176/218 (80%) Query: 1 LAKPAKDKFDPKTFLAKVGEGKSISKLGKGQNVFVQGDVADAVFYIQKGKIKLTVVSDQG 60 + K FD FLAKVG+GK++ K K +F QGD AD++FYIQ GK+KL VVS+ G Sbjct: 1 MTKGMTSPFDANDFLAKVGDGKAVLKFKKNDVIFSQGDHADSIFYIQNGKVKLIVVSEHG 60 Query: 61 KEAVVGMLEPGQFFGEGCLNGQPLRIATTTAMEDSIITRISKLAMISALEGRPKFSQLFM 120 KEAVV +LE GQFFGEGCLNG RI++T AM DS++T IS+ M++AL+ P FS LFM Sbjct: 61 KEAVVAILEAGQFFGEGCLNGHLTRISSTMAMTDSLVTSISRTGMLAALQAHPTFSTLFM 120 Query: 121 AYLLTRNSRIEEDLIDQLFNSSEKRLARLLLLLANFGKESSPQPIGVKISQETLAEMIGA 180 YLL RNSRIEEDLIDQLFNSSE+RLARLLL+LANFGK+ S QPI V+ISQETLAEMIG Sbjct: 121 TYLLNRNSRIEEDLIDQLFNSSERRLARLLLILANFGKDGSQQPIDVEISQETLAEMIGT 180 Query: 181 TRSRVSFFMNKFRRLGFISYNGKIEVHSSLLNAVLIEK 218 TRSRVS+FMNKFR+LGFISYNGKI V++SLL+AVL +K Sbjct: 181 TRSRVSYFMNKFRKLGFISYNGKIHVNNSLLDAVLHDK 218 >ref|YP_568879.1| cyclic nucleotide-binding protein [Rhodopseudomonas palustris BisB5] gb|ABE38978.1| transcriptional regulator, Crp/Fnr family [Rhodopseudomonas palustris BisB5] Length = 251 Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 145/218 (66%), Positives = 173/218 (79%), Gaps = 4/218 (1%) Query: 1 LAKPAKDKFDPKTFLAKVGEGKSISKLGKGQNVFVQGDVADAVFYIQKGKIKLTVVSDQG 60 + KP FD FL KVGEG+SISK K N+FVQGD A +VFYIQ G +KL VVS+QG Sbjct: 28 MTKP----FDAIAFLEKVGEGRSISKFKKNDNIFVQGDEASSVFYIQSGAVKLNVVSEQG 83 Query: 61 KEAVVGMLEPGQFFGEGCLNGQPLRIATTTAMEDSIITRISKLAMISALEGRPKFSQLFM 120 KEAV+ ++E G F GE CL+G +R AT +AM D+++T I+K AM++ALE PK +++F+ Sbjct: 84 KEAVIAIIEAGHFLGEACLSGHFVRTATASAMTDTVLTSITKTAMLAALEREPKLAEMFL 143 Query: 121 AYLLTRNSRIEEDLIDQLFNSSEKRLARLLLLLANFGKESSPQPIGVKISQETLAEMIGA 180 ++L R+ RIEEDLIDQLFNSSE+RLAR LLLLANFGK PQPI V+ISQ TLAEMIG Sbjct: 144 RHVLARSRRIEEDLIDQLFNSSERRLARTLLLLANFGKPGHPQPISVEISQATLAEMIGT 203 Query: 181 TRSRVSFFMNKFRRLGFISYNGKIEVHSSLLNAVLIEK 218 TRSRVS+FMNKFRRLGFISYNGKI VHSSLLNAVL EK Sbjct: 204 TRSRVSYFMNKFRRLGFISYNGKIHVHSSLLNAVLHEK 241 >ref|YP_781752.1| Crp/FNR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gb|ABJ06772.1| transcriptional regulator, Crp/Fnr family [Rhodopseudomonas palustris BisA53] Length = 234 Score = 274 bits (701), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 143/217 (65%), Positives = 175/217 (80%) Query: 9 FDPKTFLAKVGEGKSISKLGKGQNVFVQGDVADAVFYIQKGKIKLTVVSDQGKEAVVGML 68 FD FL KVG GK+I+K K +F QGD A ++++IQKG++KLTVVS QGKEAVVG+L Sbjct: 16 FDMAAFLEKVGAGKTIAKFKKNDVIFSQGDAAASIYFIQKGRVKLTVVSKQGKEAVVGVL 75 Query: 69 EPGQFFGEGCLNGQPLRIATTTAMEDSIITRISKLAMISALEGRPKFSQLFMAYLLTRNS 128 E GQFFGE CL+G R+ATT+A+ + ++ IS+ AM++AL+ PKFS F++YLL+RNS Sbjct: 76 EAGQFFGEACLHGSTKRVATTSALGECVVISISRSAMLAALKNEPKFSARFISYLLSRNS 135 Query: 129 RIEEDLIDQLFNSSEKRLARLLLLLANFGKESSPQPIGVKISQETLAEMIGATRSRVSFF 188 RIEEDLIDQLFNSSE+RLARLLLLLA+FGKE + QPI ++ISQE LA+MIG TRSRVSFF Sbjct: 136 RIEEDLIDQLFNSSERRLARLLLLLAHFGKEGTSQPIDIEISQEALADMIGTTRSRVSFF 195 Query: 189 MNKFRRLGFISYNGKIEVHSSLLNAVLIEKSELGRKD 225 MNKFRRLG ISYNGKI V+ +LLNAVL EK L D Sbjct: 196 MNKFRRLGLISYNGKIHVNHALLNAVLHEKPSLRADD 232