BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0124.0027.p         (144 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001241861.1| hypothetical protein BBta_6019 [Bradyrhizobi...   206   8e-52
ref|NP_773822.1| hypothetical protein bll7182 [Bradyrhizobium ja...   183   7e-45
ref|YP_003693863.1| hypothetical protein Snov_1944 [Starkeya nov...   120   6e-26
ref|YP_003692728.1| hypothetical protein Snov_0781 [Starkeya nov...   117   4e-25
ref|YP_001416459.1| hypothetical protein Xaut_1554 [Xanthobacter...    59   2e-07

>ref|YP_001241861.1| hypothetical protein BBta_6019 [Bradyrhizobium sp. BTAi1]
 gb|ABQ37955.1| hypothetical protein BBta_6019 [Bradyrhizobium sp. BTAi1]
          Length = 138

 Score =  206 bits (525), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 103/131 (78%), Positives = 111/131 (84%)

Query: 10  DMFKSKQYRAEAAKYGERVKGSTDLDEGRKLQELQDRLVSLADNEQRLADDYHDAVHVIG 69
           DMFKS+QYRAEAA+YG+R K + D DEGRKLQ+ QDRLVSLAD EQ LAD Y DAVH   
Sbjct: 5   DMFKSRQYRAEAAEYGKRAKEAIDPDEGRKLQDAQDRLVSLADKEQGLADGYRDAVHAAR 64

Query: 70  PDQSRGAALASEEERVLRCLGAAVIMQWNALPTTLQREIFDTAGSVGELLETAELRGQIA 129
            DQ  GA LASEEE VLRCLGAA+IMQWNALPT LQREIFDTAGSVG+LLETAELRGQIA
Sbjct: 65  SDQRHGAELASEEEHVLRCLGAAIIMQWNALPTGLQREIFDTAGSVGKLLETAELRGQIA 124

Query: 130 RFLHKHKNDAN 140
           RFLHKHK+  N
Sbjct: 125 RFLHKHKDGTN 135


>ref|NP_773822.1| hypothetical protein bll7182 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC52447.1| bll7182 [Bradyrhizobium japonicum USDA 110]
          Length = 134

 Score =  183 bits (465), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 92/133 (69%), Positives = 107/133 (80%)

Query: 11  MFKSKQYRAEAAKYGERVKGSTDLDEGRKLQELQDRLVSLADNEQRLADDYHDAVHVIGP 70
           MFK  QYRA AA YGE  + S   D+ RK ++LQD L S ADNEQ LAD Y DAV+  G 
Sbjct: 1   MFKFLQYRARAAAYGELARSSPGKDDTRKFEKLQDSLASRADNEQVLADQYVDAVNAGGT 60

Query: 71  DQSRGAALASEEERVLRCLGAAVIMQWNALPTTLQREIFDTAGSVGELLETAELRGQIAR 130
           ++ RGAALA+EEERVLRCLGAAVIMQWN+LPTTLQREIFDTAGSVG LL+TA LRGQIAR
Sbjct: 61  ERLRGAALAAEEERVLRCLGAAVIMQWNSLPTTLQREIFDTAGSVGTLLDTAALRGQIAR 120

Query: 131 FLHKHKNDANGNE 143
           FLHKH++D + ++
Sbjct: 121 FLHKHRHDTDPSK 133


>ref|YP_003693863.1| hypothetical protein Snov_1944 [Starkeya novella DSM 506]
 gb|ADH89244.1| hypothetical protein Snov_1944 [Starkeya novella DSM 506]
          Length = 276

 Score =  120 bits (302), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 60/130 (46%), Positives = 84/130 (64%)

Query: 11  MFKSKQYRAEAAKYGERVKGSTDLDEGRKLQELQDRLVSLADNEQRLADDYHDAVHVIGP 70
           MF + +Y   A  Y      + +  E  K ++LQ     +A NE  L ++Y + +H    
Sbjct: 138 MFIADKYSEMAEDYKSLASMTDNFSEIAKFRKLQKNAEDMAQNEAWLNENYENTLHSNDS 197

Query: 71  DQSRGAALASEEERVLRCLGAAVIMQWNALPTTLQREIFDTAGSVGELLETAELRGQIAR 130
            +    A A+EEE VLRCLGAA++MQW +LP T+QRE+FD+AG++GEL  TA LRGQIAR
Sbjct: 198 VRDNKPAFAAEEEYVLRCLGAALLMQWPSLPATIQRELFDSAGALGELQNTALLRGQIAR 257

Query: 131 FLHKHKNDAN 140
           FLH+HK+DA+
Sbjct: 258 FLHRHKDDAS 267


>ref|YP_003692728.1| hypothetical protein Snov_0781 [Starkeya novella DSM 506]
 gb|ADH88109.1| hypothetical protein Snov_0781 [Starkeya novella DSM 506]
          Length = 266

 Score =  117 bits (294), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 58/129 (44%), Positives = 79/129 (61%)

Query: 9   PDMFKSKQYRAEAAKYGERVKGSTDLDEGRKLQELQDRLVSLADNEQRLADDYHDAVHVI 68
           P MF   +Y   +  Y      + +  E  + ++LQ     LADNE+ L ++Y   +H  
Sbjct: 97  PSMFDPNKYSKMSDDYESMANMTDNSSEISRFRKLQKSSQDLADNEEWLKNNYEHTLHSD 156

Query: 69  GPDQSRGAALASEEERVLRCLGAAVIMQWNALPTTLQREIFDTAGSVGELLETAELRGQI 128
              Q      A+EEE VLRCLGAA++MQW  LP  +QRE+FD+AG++GEL  TA LRGQI
Sbjct: 157 NAAQHDNTTFAAEEEHVLRCLGAALLMQWPRLPAMIQRELFDSAGTMGELQNTAMLRGQI 216

Query: 129 ARFLHKHKN 137
           ARFLH+HK+
Sbjct: 217 ARFLHRHKD 225


>ref|YP_001416459.1| hypothetical protein Xaut_1554 [Xanthobacter autotrophicus Py2]
 gb|ABS66802.1| hypothetical protein Xaut_1554 [Xanthobacter autotrophicus Py2]
          Length = 111

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 74  RGAALASEEERVLRCLGAAVIMQWNALPTTLQREIFDTAGSVGELLETAELRGQIARFLH 133
           R A+L   E  +L CLGAA++ +W  LPT +QR +F  A +  +  + A+L+  IARFLH
Sbjct: 38  RHASLTERERHILECLGAALVKEWTDLPTPVQRALFRRA-TASDHDDPAQLKVLIARFLH 96

Query: 134 KHKNDANGNE 143
            HK++   ++
Sbjct: 97  DHKDEPKSSQ 106