BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0124.0017.p         (152 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003467944.1| ClpP protease [Xenorhabdus bovienii SS-2004]...    39   0.32 
ref|ZP_04578647.1| two-component hybrid sensor kinase/response r...    36   2.4  
gb|EGR28086.1| protein kinase domain protein [Ichthyophthirius m...    35   3.5  
ref|XP_001448673.1| hypothetical protein [Paramecium tetraurelia...    35   3.6  
ref|NP_588332.1| ATP-dependent RNA helicase Dbp6 [Schizosaccharo...    35   3.7  

>ref|YP_003467944.1| ClpP protease [Xenorhabdus bovienii SS-2004]
 emb|CBJ81171.1| ClpP protease [Xenorhabdus bovienii SS-2004]
          Length = 283

 Score = 38.5 bits (88), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 12/101 (11%)

Query: 38  ALLKLHEVLSTSSVNVSSIVELIE--RGELDKIVEIYALRPALLPDLLRLAKSDTDFLSV 95
           A L +H   +    N + +V + E  R   D +++IYA R  +  D   +A+   D    
Sbjct: 131 AFLMIHNAWTCCCGNKNELVAVAEALRPFDDSLIDIYAARTGI--DKASIAQMMDD---- 184

Query: 96  LECLVRHEKGISEGSAKGLLEAAVI--ANDCPE-VLRFLEV 133
            E  + H + I++G A GLL A VI   ND P+  LR L+ 
Sbjct: 185 -ETFINHTEAIAQGFADGLLTADVIDDGNDSPQAALRKLDA 224


>ref|ZP_04578647.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes OXCC13]
 gb|EEO29620.1| two-component hybrid sensor kinase/response regulator [Oxalobacter
           formigenes OXCC13]
          Length = 551

 Score = 35.8 bits (81), Expect = 2.4,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 15/83 (18%)

Query: 34  VSSPALLKL-HEVLSTSSVNVSSIVELIERGELDKIVEIYALRPALLPDLLR----LAKS 88
           VSS  LL L +E+L  S          IE G++D + E+ +L P L+ D+L     L   
Sbjct: 474 VSSRHLLNLVNEILDMSK---------IESGKVDLVSEVVSL-PQLVGDVLAMCQPLVSG 523

Query: 89  DTDFLSVLECLVRHEKGISEGSA 111
               L+V   LVRHEK IS+G A
Sbjct: 524 KKQELNVSASLVRHEKVISDGGA 546


>gb|EGR28086.1| protein kinase domain protein [Ichthyophthirius multifiliis]
          Length = 516

 Score = 35.0 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 9/74 (12%)

Query: 3   EDAKRTVYAVAQ-----AIVDDKTNSRNMRSI-ILSVVSSPALLKLHEVLSTSSVNVSSI 56
           ED K  +YAV       A   DK     +  I IL  ++ P +LKLHEV  T++ ++  I
Sbjct: 32  EDGK--IYAVKAFCKEYAYAQDKGRESLINEIEILRSLNHPNILKLHEVFETNN-SIYFI 88

Query: 57  VELIERGELDKIVE 70
           ++LIE GEL   +E
Sbjct: 89  LDLIEGGELSDKLE 102


>ref|XP_001448673.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 emb|CAK81276.1| unnamed protein product [Paramecium tetraurelia]
          Length = 475

 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 6   KRTVYAVAQAIVDDKTNSRNMRSIILSVVSSPALLKLHEVLSTSSVNVSSIVELIERGEL 65
           KR + A+A+  V DK + +N   +IL  +  P +LK++EV  T    V  + E+ E GEL
Sbjct: 54  KRAIKAIAKDRVVDKESFKN-ELLILRKIDHPNILKMYEVYETEK-TVYLVTEMCEGGEL 111


>ref|NP_588332.1| ATP-dependent RNA helicase Dbp6 [Schizosaccharomyces pombe 972h-]
 sp|Q76PD3.1|DBP6_SCHPO RecName: Full=ATP-dependent RNA helicase dbp6
 emb|CAA20842.1| ATP-dependent RNA helicase Dbp6 (predicted) [Schizosaccharomyces
           pombe]
          Length = 604

 Score = 35.0 bits (79), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 16  IVDDKTNSRNMRSIILSVVSSPALLKLHEVLSTSSVNVSSIVELIERGELDKIVEIYALR 75
            VD K + +N+ S++   ++ P  +  +  +  SS+N+SS  +L+ER +   I   +A++
Sbjct: 96  FVDSKPHVKNITSVLPKWLAEPITVDPNTTVEFSSLNISS--KLVERLQKQNITRGFAVQ 153

Query: 76  PALLPDLLR 84
            A+LP LL+
Sbjct: 154 AAVLPLLLQ 162