BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0124.0014.p (704 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002424319.1| ATPase AAA [Methylobacterium chloromethanicu... 264 4e-68 ref|YP_420399.1| ATP-dependent Zn protease [Magnetospirillum mag... 253 1e-64 ref|YP_003067224.1| hypothetical protein METDI1647 [Methylobacte... 242 1e-61 gb|EGP56802.1| putative ATP-dependent hydrolase protein [Agrobac... 241 4e-61 ref|YP_421050.1| ATP-dependent Zn protease [Magnetospirillum mag... 241 5e-61 >ref|YP_002424319.1| ATPase AAA [Methylobacterium chloromethanicum CM4] gb|ACK86391.1| AAA ATPase central domain protein [Methylobacterium chloromethanicum CM4] Length = 699 Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 194/531 (36%), Positives = 267/531 (50%), Gaps = 29/531 (5%) Query: 146 PFVAFSSNGRACLPKVLNEAARYRIELPMLDPATVSRTIRAVTGIRTAVDVPAETMRDVG 205 P V S + LP+ L AA + +E+ LD A VS + AV G R + Sbjct: 160 PVVGISHDPARLLPRDLVRAADFTVEVGPLDGAGVSLVVEAVAGTRPRSALEDRLAALCD 219 Query: 206 VGDLAAAIRFDRTPEECVDELHR--LAASKRAERPSRGLALSEIHGMAGARAWADDAIAD 263 DL +R D+ + L + +A S A P L ++HG A+AW + D Sbjct: 220 PADLLVFVRRDQDADASTSRLRQGLIARSGVAGGPR----LEDLHGYGEAKAWGLALVDD 275 Query: 264 LAAWRHGEIPWDAVSSAVMLAGPPGVGKTLFAEAFARSASGEDSKSGIPLIVCSYYSWQA 323 L WR G IP+ A + ++L+GPPGVGKT FA A ARS + + S WQ Sbjct: 276 LRRWRSGTIPFSACETGLLLSGPPGVGKTRFAMAVARSTQ-------LNFLAGSLGQWQG 328 Query: 324 --EGHLGDFLAAMRRDFASARAQAPCVMLLEECDSFVDRRAVKHSHSDYVRNCINALLEE 381 +GHLG L AMRR F AR Q P +ML++E DSF R + H DY +NALLE Sbjct: 329 ARDGHLGHLLGAMRRFFEEARRQ-PSLMLIDEIDSFGSREEFRAHHRDYSSQVVNALLEL 387 Query: 382 VDGVRRREGVFLIGCTNEVEACDPALLRAGRFENVVRISPPDQDELKKIFRVRLKGDLVG 441 +DG REG+ +IG TN DPA+ R+GR E + + PD D L+ IFR L+ DL Sbjct: 388 IDGATSREGIVIIGATNHPHRLDPAIRRSGRLERHIHLGQPDADSLRGIFRHYLREDLPA 447 Query: 442 VDISTVVMSAAGMTGADAERAVKDARRVARRENRELRLDDLRLAL-VGDHDVSGKLRWRT 500 +D+ + A G+TGAD E AV+ AR ++RR R L+ +DL AL G + +LRWR Sbjct: 448 LDLRALAQEARGLTGADVETAVRRARGLSRRAGRPLKPEDLADALRNGRPKLGDELRWRI 507 Query: 501 SIHEAGHAVVDVLRFGPDGVVANTTRTDRRLGMSMRTTRQVFEGTASDYRSRIEVLLAGR 560 +HEAGH + V G V + R+ + S R V T D + + L+GR Sbjct: 508 CVHEAGHGLAAVSGGGRHTSVELSVRSTGGMIESQPADR-VESPTEDDLEAYLVTALSGR 566 Query: 561 AAEEVLLGEASHGAQQDLAEATRLSCAMLGGLGLAGPSPLTHLG-----DPRHAEEFLRH 615 AAE+V+LG+ + G+ DLA ATR + M G + PL +G D A +R Sbjct: 567 AAEQVVLGDVATGSASDLAAATRCATMMETRFGFSRDFPLVTIGLDDEVDLTRAPFLIRP 626 Query: 616 VDIRAAVGIELAEADRACHDLLEGNRTALIAVARRLFERGSVDGAEIAALL 666 V R E A A L++ R AL +A L RG ++ AEI A++ Sbjct: 627 VADRLKASYERALA------LMQAERPALERLALALSRRGFLEDAEIRAIV 671 >ref|YP_420399.1| ATP-dependent Zn protease [Magnetospirillum magneticum AMB-1] dbj|BAE49840.1| ATP-dependent Zn protease [Magnetospirillum magneticum AMB-1] Length = 688 Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 187/540 (34%), Positives = 267/540 (49%), Gaps = 32/540 (5%) Query: 158 LPKVLNEAARYRIELPMLDPATVSRTIRAVTGIRTAVDVPAETMRDVGVGDLAAAIRFDR 217 LPK L A +R+ +P LD T+ I +T A + E R + D+A A R Sbjct: 155 LPKDLLRVADHRLVVPPLDSTTLHEIILTMTNSVPAEPISDELARRCDIEDIALASRPGD 214 Query: 218 TPEECVDELHRLAASKRAERPSRGLALSEIHGMAGARAWADDAIADLAAWRHGEIPWDAV 277 + + L RL + R + P+ + L ++ GM A +W ADL ++ G IPW AV Sbjct: 215 GADTILQRLRRLVET-RNQVPA--ITLDQLFGMPEATSWGQSLKADLIEFKAGRIPWSAV 271 Query: 278 SSAVMLAGPPGVGKTLFAEAFARSASGEDSKSGIPLIVCSYYSWQAEGHLGDFLAAMRRD 337 +L GPPG GKT FA A A S +PLI S WQ+ GHLGD L +MR Sbjct: 272 DRGCLLFGPPGTGKTTFARALAGSCV-------LPLISASLAQWQSSGHLGDLLKSMRAT 324 Query: 338 FASARAQAPCVMLLEECDSFVDRRAVKHSHSDYVRNCINALLEEVDGVRRREGVFLIGCT 397 F +ARA AP ++ ++E D F +R K + DY +N LE +DGV REGV ++ Sbjct: 325 FDAARAAAPSILFIDEVDGFGNRSQFKSEYRDYSVQVVNGFLELLDGVTGREGVVVVAAC 384 Query: 398 NEVEACDPALLRAGRFENVVRISPPDQDELKKIFRVRLKGDLVGVDISTVVMSAAGMTGA 457 N E DPA++R+GR + + I PDQ+ + KI R L DL G+D+ + A G TGA Sbjct: 385 NHPERLDPAIVRSGRLDRGILIPLPDQESIGKILRYHLGQDLNGIDLKDLAKLAYGGTGA 444 Query: 458 DAERAVKDARRVARRENRELRLDDLRLALVGDHDVSGKLRW-------RTSIHEAGHAVV 510 D ER V+ ARR AR NR + +DL ++ GK+R R++IHEAGHAVV Sbjct: 445 DIERWVRGARRCARNANRPMVQEDLTT------EIRGKIRTAPAEVVRRSAIHEAGHAVV 498 Query: 511 DVLRFGPDGVVANTTRTDRRLGMSMRTTRQVFEGTASDYRSRIEVLLAGRAAEEVLL--- 567 L V+A+ +T+ G + Q T SD + LLAGRAAE+ L+ Sbjct: 499 IALHRPDMLVMASIRQTEESGGGVTISLDQGSIETRSDINFMLMHLLAGRAAEQTLIGSV 558 Query: 568 -GEASHGAQQDLAEATRLSCAMLGGLGLAGPSPLTHLGDPR---HAEEFLRHVDIRAAVG 623 + DLA AT L+ L +G+ PL G P D+ V Sbjct: 559 STGSGGSTSSDLARATVLATVSLTAMGMDDQMPLVWTGMPNIDSIGPMLSTRPDLARKVS 618 Query: 624 IELAEADRACHDLLEGNRTALIAVARRLFERGSVDGAEIAALLEAERSA--AADAEGARG 681 L +A + +L+ N T ++ +A L + ++D EI A ++ + + AA +EG G Sbjct: 619 SILEQAYQEALNLIRWNSTTVLRIADMLQRQETLDAHEIIAQVDPQSAGLLAAHSEGGYG 678 >ref|YP_003067224.1| hypothetical protein METDI1647 [Methylobacterium extorquens DM4] emb|CAX23244.1| hypothetical protein, putative ATPase domain [Methylobacterium extorquens DM4] Length = 719 Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 212/666 (31%), Positives = 326/666 (48%), Gaps = 47/666 (7%) Query: 30 EENASREGCPPSPARIAA-ALLLARAFDAAPDAARDL-----ICGGAPVVVDIADGAMLD 83 EEN P PA +AA A++LARA +A P R L + A V+D+ + + Sbjct: 71 EENRPEATHVPVPADLAAVAVMLARAIEAEPGLVRRLRREAPVVTLATHVIDLVEPVRIV 130 Query: 84 ALKGGWRGMFFDDALRMIDLVKTAPGRRDGL---DGAYIVLREPLKGAAKQRLERVAADM 140 A K +F D +V+ + GR L + A V + A ++ V Sbjct: 131 AEKC----LFRPDT----KVVELSSGRARELTRRNAALFVCDGVGRDARPEKGNDVIGSA 182 Query: 141 CAYALPFVAFSSNGRACLPKVLNEAARYRIELPMLDPATVSRTIRAVTGIRTAVDVPAET 200 +P V + + + LP+ L +A +RI LP LD A ++ + AV G R + + + Sbjct: 183 LHVRVPIVGIAPDPKRQLPRDLMRSAEHRITLPSLDQAGLALVVEAVVGSRPSRGIDQDL 242 Query: 201 MRDVGVGDLAAAIRFDRTPEECVDELHRLAASKRAERPSRGLALSEIHGMAGARAWADDA 260 +R + + DL A+R + + C++ L R+ A+K A+ G AL E+ G A+ W A Sbjct: 243 LRMIDIVDLPVALRRATSSDSCIEALERIVAAK-ADYLGEGTALEELDGYGEAKTWGLAA 301 Query: 261 IADLAAWRHGEIPWDAVSS-AVMLAGPPGVGKTLFAEAFARSASGEDSKSGIPLIVCSYY 319 ADL A+R G++ W ++L+GPPGVGKT FA A A+SA +PL+ S Sbjct: 302 AADLQAYRSGQLSWAEFDHRGLLLSGPPGVGKTSFARALAKSAR-------VPLVGTSVA 354 Query: 320 SWQAEGHLGDFLAAMRRDFASARAQAPCVMLLEECDSFVDRRAVKHSHSDYVRNCINALL 379 W + +L L A+R+ FA A+AQAPC++ ++E D DR ++ + Y +N L Sbjct: 355 EWNSADYLSGTLQAIRKVFAQAKAQAPCILFIDEIDGISDRGQIQGEYVQYWTQIVNLFL 414 Query: 380 EEVDGVRRREGVFLIGCTNEVEACDPALLRAGRFENVVRISPPDQDELKKIFRVRLKGDL 439 E + GV R GV ++ TN E DPA+ RAGR + + I+ PD L +IFR L ++ Sbjct: 415 ELLAGVDERPGVVVVAATNYPERIDPAVKRAGRLDREIAIAKPDTAALAQIFRHHLGREI 474 Query: 440 V-GVDISTVVMSAAGMTGADAERAVKDARRVARRENRELRLDDLRLALV--GDHDVSGKL 496 + + + ++A GMTGAD E ++ A+ ARR+ R + ++D+ LA V G + + Sbjct: 475 LPSASMLPLALAARGMTGADVEAFIRRAKGTARRKARAVTVEDV-LAEVRQGRRPLPATI 533 Query: 497 RWRTSIHEAGHAVVD-VLRFGPDGVVANTTRTDRRLGMSMRTTRQVFEGTASDYRSRIEV 555 R R ++HEAGHAVV L F G++ + + D G + T + + + Sbjct: 534 RHRVAVHEAGHAVVSHALGF---GMLMDLSLHDNG-GQACLELAMEGAATLHELEAAMAS 589 Query: 556 LLAGRAAEEVLLGEAS----HGAQQDLAEATRLS--CAMLGGLGLAGPSPLTHLGDPRHA 609 LLAGR AEE+ LG S GA DLA AT ++ + GLG G H+ A Sbjct: 590 LLAGRIAEEIELGAGSIGAGFGANSDLAMATAIARDIELTFGLGQLGN---VHV---EAA 643 Query: 610 EEFLRHVDIRAAVGIELAEADRACHDLLEGNRTALIAVARRLFERGSVDGAEIAALLEAE 669 + + + AV L A +L R+AL A+ L E G + EI L+ E Sbjct: 644 ADTVLIAGVLPAVVERLRHASERARRILTKRRSALQALTGMLEESGYLSRHEIDLALKTE 703 Query: 670 RSAAAD 675 +D Sbjct: 704 TDCESD 709 >gb|EGP56802.1| putative ATP-dependent hydrolase protein [Agrobacterium tumefaciens F2] Length = 657 Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 195/534 (36%), Positives = 263/534 (49%), Gaps = 48/534 (8%) Query: 162 LNEAARYRIELPMLDPATVSRTIRAVTGIRTAVDVPAET--------MRDVGVGDLAAAI 213 L E R I LP D +S +R V I ++ +PA T MR + + A Sbjct: 104 LRELKRAIILLP--DEELLSDEVRIVADIVVSLPLPAPTDYRIAAQRMRLGTITNADADF 161 Query: 214 RFDRTPEEC-------------VDELHRLAASKRAERPSR----GLALSEIHGMAGARAW 256 ++P+ + LHR ++ +RPS G +L ++ G A+ W Sbjct: 162 LAKQSPKRVELGWRRGRSLAVSIGRLHRYPHIEKGKRPSEPLSTGPSLQDLSGYGEAKTW 221 Query: 257 ADDAIADLAAWRHGEIPWDAVSSAVMLAGPPGVGKTLFAEAFARSASGEDSKSGIPLIVC 316 + DLAAW+ G + WD V V+L+GPPG GKT +A A AR+ + +PLI+ Sbjct: 222 GLELTEDLAAWKAGRLAWDDVDRGVLLSGPPGSGKTSYAAAVARTCN-------VPLILG 274 Query: 317 SYYSWQAEGHLGDFLAAMRRDFASARAQAPCVMLLEECDSFVDRR-AVKHSHSDYVRNCI 375 S WQA GHLGD L AMR+ FA A QAP ++L++E DSF R S+ +Y R I Sbjct: 275 SAARWQATGHLGDMLKAMRKAFAEAARQAPSILLIDEFDSFTSRDDRTGSSNDNYHRQVI 334 Query: 376 NALLEEVDGVRRREGVFLIGCTNEVEACDPALLRAGRFENVVRISPPDQDELKKIFRVRL 435 NALLE +DG + EGV +IG TN E DPALLRAGR E I PD+ I+R L Sbjct: 335 NALLELLDGAQSHEGVIVIGATNHPEIIDPALLRAGRLERHFSIPLPDEVARHDIYRFYL 394 Query: 436 KGDLVGVDISTVVMSAAGMTGADAERAVKDARRVARRENRELRLDDLRLALVGDHDVSGK 495 +GDL + VV ++ G +GAD ER V+DARR ARR R++ L DL AL + Sbjct: 395 RGDLADEALDDVVSASDGWSGADIERCVRDARRYARRAKRQMILTDLIAALPPLVPIPMA 454 Query: 496 LRWRTSIHEAGHAVVDVLRFGPDGVVA-------NTTRTDRRLGMSMRTTRQVFEGTASD 548 +R + HE GHA++ VL D +V+ T R LG + R T++ Sbjct: 455 VRRCVAAHELGHAILGVL-LEADPLVSVSIEKAIQTDSRSRSLGYTAFEERLFSRKTSTY 513 Query: 549 YRSRIEVLLAGRAAEEVLLGEASHGA----QQDLAEATRLSCAMLGGLGLAGPSPLTHLG 604 +RS+I LL G AAEEVL GE GA DL AT L+ M GL + Sbjct: 514 FRSKIATLLGGIAAEEVLFGEFGSGAGGDPSADLNRATDLATMMETRWGLGKTLSVEPGD 573 Query: 605 DPRHAEEF-LRHVDIRAAVGIELAEADRACHDLLEGNRTALIAVARRLFERGSV 657 PR F R + +V L R LLE +R AL+ + L GS+ Sbjct: 574 SPRELSAFRHRRKALSKSVEATLQAEFRRAKSLLEEHRDALLDLHASLLREGSL 627 >ref|YP_421050.1| ATP-dependent Zn protease [Magnetospirillum magneticum AMB-1] dbj|BAE50491.1| ATP-dependent Zn protease [Magnetospirillum magneticum AMB-1] Length = 676 Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 218/666 (32%), Positives = 313/666 (46%), Gaps = 38/666 (5%) Query: 26 DTGFEENASREGCPPSPARIAAALLLARAFDAAPDAARDLICGGAPVVVDIADGAMLDAL 85 D G A P P +AA +L AF A P+ RDL G+ ++ + Sbjct: 24 DLGGPAPADNPPRPRDPGDLAAISMLEAAFAAHPEV-RDLAGQGSAAIIVAVPPLWAKPV 82 Query: 86 KGGWRGMFF-DDALRMIDLVKTAPGRRDGLDGAYIVLREPLKGAAKQRLERVAADMCAYA 144 + W + D + T+ RD + +I + AA R A + A A Sbjct: 83 QRAWAFLMMRDGQIAENGDTFTSLRWRDPAEQLHIAFVR--EDAADARKTADGAAVVALA 140 Query: 145 LPF----VAFSSNGRACLPKVLNEAARYRIELPMLDPATVSRTIRAVTGIRTAVDVPAET 200 L V F+ + LP L AA I L +D ++ I ++G + P E Sbjct: 141 LGHGGTAVGFAPDPETSLPAALLAAADATITLKPIDSQQLAEVIEEISG-----NAPTEV 195 Query: 201 MRD-----VGVGDLAAAIRFDRTPEECVDELHRLAASKRAERPSRGLALSEIHGMAGARA 255 + D + DL A+R + + L + A KR P + L+++ GM A Sbjct: 196 IADTIAAKISPDDLRLAVRAGQDANSAIRRLVAMIA-KRQIIPD--ITLADLGGMEEAVT 252 Query: 256 WADDAIADLAAWRHGEIPWDAVSSAVMLAGPPGVGKTLFAEAFARSASGEDSKSGIPLIV 315 W DLA +R G + W V V+L+GPPG GKT FA A A S G PLI Sbjct: 253 WGFSLANDLAEYRDGILSWSEVDRGVLLSGPPGCGKTTFARALAGSC-------GTPLIA 305 Query: 316 CSYYSWQAEGHLGDFLAAMRRDFASARAQAPCVMLLEECDSFVDRRAVKHSHSDYVRNCI 375 S WQA GHLGD L AMRR F ARA AP ++L++E D F DR + H DY I Sbjct: 306 SSLGEWQAAGHLGDLLKAMRRTFEQARAAAPAILLVDEIDGFGDRANLSSGHKDYSVQVI 365 Query: 376 NALLEEVDGVRRREGVFLIGCTNEVEACDPALLRAGRFENVVRISPPDQDELKKIFRVRL 435 N LE +DGV REG+ ++G TN DPA+ R+GR + + I PD+ L KI R L Sbjct: 366 NGFLELLDGVVAREGIVVVGATNHPSRLDPAITRSGRLDRHITIGLPDEGGLTKILRHHL 425 Query: 436 KGDLVGVDISTVVMSAAGMTGADAERAVKDARRVARRENRELRLDDLRLALVGD-HDVSG 494 DL G D+S A G TGADA R V+ A+R R+ R + ++DL + G+ +V Sbjct: 426 GDDLPGEDLSAAAKLALGGTGADAARWVRGAKRRGRQGARSMCMEDLIAEIRGNAPEVCP 485 Query: 495 KLRWRTSIHEAGHAVVDVLRFGPDGVVANTTRTDRRLGMSMRTTRQVFE-GTASDYRSRI 553 + R +IHEAGHA+ + P + + R G + + R + + T+SD + Sbjct: 486 SILRRCAIHEAGHAIA-IAVLHPATLRHVSIRQTWTTGGGVISQRPLHDLATSSDIDELL 544 Query: 554 EVLLAGRAAEEVLL----GEASHGAQQDLAEATRLSCAMLGGLGLA-GPSPL-THLGDPR 607 +L+AGRA+EE++L A G + DLA+AT L+ + + LGL +P+ + + P Sbjct: 545 MILMAGRASEEIVLGSASSGAGGGVESDLAKATMLATSAITALGLGRATTPIWSGMPSPD 604 Query: 608 HAEEFL-RHVDIRAAVGIELAEADRACHDLLEGNRTALIAVARRLFERGSVDGAEIAALL 666 + L R DI V L A A L+ G+ +L + RL E ++ G E+ ALL Sbjct: 605 TIDILLSRRPDIGRQVEARLDRAYGAAKTLITGHSGSLSRIVDRLIEVETLSGDEVLALL 664 Query: 667 EAERSA 672 E A Sbjct: 665 LPESPA 670