BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0124.0007.p (532 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00955603.1| hypothetical protein EE36_13218 [Sulfitobacte... 422 e-116 ref|ZP_04417215.1| reverse transcriptase [Vibrio cholerae 12129(... 266 5e-69 gb|AEB26254.1| RNA-directed DNA polymerase [Bacillus amyloliquef... 262 1e-67 ref|YP_126373.1| hypothetical protein lpl1015 [Legionella pneumo... 256 9e-66 ref|YP_002559740.1| hypothetical protein MCCL_0337 [Macrococcus ... 255 1e-65 >ref|ZP_00955603.1| hypothetical protein EE36_13218 [Sulfitobacter sp. EE-36] gb|EAP84028.1| hypothetical protein EE36_13218 [Sulfitobacter sp. EE-36] Length = 367 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 209/371 (56%), Positives = 263/371 (70%), Gaps = 17/371 (4%) Query: 170 MICFRMDKELQTIAKESRCIYTRYADDITFSSYQPLTLLFEGPPPPAGNFPPDLLKDRLR 229 MICFR+DK L +KE R +YTRYADDIT SS+QP T LFEG P G + L D LR Sbjct: 1 MICFRLDKTLINFSKEHRLLYTRYADDITLSSFQPPTALFEGDRPDPGRLALEKLSDDLR 60 Query: 230 GAFRSNGFAINPQKIHYADKHSRRTVTGLKINEFVNVDRKYVRNTRAALFVTETRGAAVA 289 F++NGF +NP+K+HYADK+SRR VTG+KINE +NVDR+YVRN R+ALF ET G A A Sbjct: 61 MIFKNNGFELNPEKVHYADKNSRRMVTGIKINEGLNVDRRYVRNVRSALFRVETTGLAAA 120 Query: 290 QKILKDKYGREATLASHLRGRISWVGHIKGPSDPIFRGLASRYNKLFPSEKLEILPTNLE 349 Q LK ++G+ + +HL+G+ISW+G +KG SDP+FRGLA RYN FP+ +++ PT E Sbjct: 121 QAELKTRFGKSCKVQAHLQGKISWIGFVKGQSDPVFRGLAKRYNASFPASPIKVHPTKDE 180 Query: 350 IRERAVWVVEHWADDAAEGSAQGTAFFLKSVGLVTAWHCVEGATEIAVYHPSKTSNKFKV 409 I +RAVWVVE DD GTAFFL VGLVTA HCV GA+EI V+HP +TSNKFKV Sbjct: 181 IFDRAVWVVE--TDDDT-----GTAFFLDGVGLVTAAHCVNGASEIEVFHPLRTSNKFKV 233 Query: 410 TVAKNDAHRDLAVLAHEIPVTEYYEFDISKRTFKVGDNTTAIGFPSFGPGDKINVRSGSI 469 T+ AHRDLA+L H IP TE++ + + + VG NT A GFP++GPGD++NVR GSI Sbjct: 234 TIKHICAHRDLAILEHLIPSTEFFGLEAFEGSVTVGTNTLAAGFPTYGPGDRLNVRQGSI 293 Query: 470 TSLPTKSAVPMIEVTQKLSQGMSGGPLLDDDGAVAGVNHKGGP----------GEARDFA 519 +SL TKSAVP+IEV+Q L QGMSGGPL+D+D AV G+ HKGGP R A Sbjct: 294 SSLTTKSAVPLIEVSQMLGQGMSGGPLMDEDHAVFGIIHKGGPVAYVTKDGSVSPQRQLA 353 Query: 520 VHVNALTDWLS 530 V ++ L W++ Sbjct: 354 VAISELKAWVA 364 >ref|ZP_04417215.1| reverse transcriptase [Vibrio cholerae 12129(1)] gb|EEN99671.1| reverse transcriptase [Vibrio cholerae 12129(1)] Length = 542 Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 172/527 (32%), Positives = 265/527 (50%), Gaps = 48/527 (9%) Query: 26 LLKFLALSTAELKKIWWFRGRMYQKFEISKGGQKKRVISAPDRRLKMLQTKIASSLASIY 85 + +FL + + Y+ F + K +R I AP +RLK LQ K+ + L S Y Sbjct: 1 MYQFLGVDPETTGGFLYGDATKYRVFSVPKKSGGEREIVAPTKRLKYLQNKVKAELESYY 60 Query: 86 RPRNPVHGFVDGRSVKTNATAHLRSKFVLNLDIEGFFMAITEGRVSGLMG--ALGVDGRV 143 PR VHGFV GRSV +NA +H+R ++VLN+D+E FF +I GRVS L L + V Sbjct: 61 SPRKCVHGFVSGRSVISNAQSHVRKEYVLNIDLEDFFGSINFGRVSKLFQRPPLNLPHGV 120 Query: 144 AEILARICCNEGVLPQGAPSSPVISNMICFRMDKELQTIAKESRCIYTRYADDITFSSYQ 203 A +LA ICC+ GVLPQGAP+SP+ISNMI F++D++L+ +A + C YTRYADDI+FS Sbjct: 121 ASVLAHICCHRGVLPQGAPTSPIISNMIAFKLDRQLRELAYKCSCTYTRYADDISFS--- 177 Query: 204 PLTLLFEGPPPPAGNFPPD---LLKDRLRGAFRSNGFAINPQKIHYADKHSRRTVTGLKI 260 T + P F + +L L+ N F IN +K + R++VT + + Sbjct: 178 -FTNRKKSLPKAIAFFDSNDELVLGKELKDIIEDNWFKINDKKTRIQHRTQRQSVTNITV 236 Query: 261 NEFVNVDRKYVRNTRAALFVTETRGAAVAQKILKDKYGR-------EATLASH------- 306 NE VNV+RK++R T + L GA A++ +KY + A ++ Sbjct: 237 NEKVNVNRKFIRQTSSMLNALFKYGAVEAEREYFEKYHKGYIANRQRAKMSEQPGKLFTQ 296 Query: 307 -LRGRISWVGHIKGPSDPIFRGLASRYNKLFPSEKLEILPTNLEIRERAVWVVEHWA--- 362 +RGR++++ ++G S ++R L RY + EI R+ W + + Sbjct: 297 KIRGRLNFIRSVRGSSCNVWRSLMYRYTVAIGNPN--------EIYNRSWWEIAAESTYI 348 Query: 363 --DDAAEGSAQGTAFFLKSVGLVTAWHCVEGATEIAV-------YHPSKTSNKFKVTVAK 413 D +AEG+ QG+ F L +GLVT H + G + + + P+ + VA Sbjct: 349 LYDLSAEGNGQGSGFLLDGIGLVTNEHVIAGVEQNNIVDTLSIEWLPNTKKEFIGLNVAW 408 Query: 414 NDAHRDLAVLAHEIPVTEYYEFDISKR-TFKVGDNTTAIGFPSFGP--GDKINVRSGSIT 470 +A +DLAV+ + + + + + VG AIG+P++ +K + IT Sbjct: 409 KNAEKDLAVITSDFVFNDTVPLTLERNPNYSVGTEIFAIGYPAYETRGANKATILQAKIT 468 Query: 471 SLPTKSAVPMIEVTQKLSQGMSGGPLLDDDGAVAGVNHKG-GPGEAR 516 + + + Q + G SGG +L+ DG V GV G GE R Sbjct: 469 GEVVREGQDRVVIDQPIIHGHSGGVVLNTDGRVIGVVANGNAEGEVR 515 >gb|AEB26254.1| RNA-directed DNA polymerase [Bacillus amyloliquefaciens TA208] gb|AEK91317.1| RNA-directed DNA polymerase [Bacillus amyloliquefaciens XH7] Length = 587 Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 181/525 (34%), Positives = 262/525 (49%), Gaps = 77/525 (14%) Query: 44 RGRMYQKFEISKGGQKKRVISAPDRRLKMLQTKIASSLASIYRPRNPVHGFVDGRSVKTN 103 +G Y+ F++ K +RVI +P L +LQ K+A L S Y+ +GFV GR + N Sbjct: 48 KGANYKAFKLKKKNGSERVIFSPTLSLSILQKKLAYILESNYKNHRQSYGFVKGRGIVDN 107 Query: 104 ATAHLRSKFVLNLDIEGFFMAITEGRV-SGLMGALGVDGRVAEILARICCN-EGVLPQGA 161 A HL K+VLN DIE FF +IT RV S M + +VA LA ICC+ G LPQGA Sbjct: 108 AQKHLNKKYVLNFDIENFFESITFRRVRSMFMTYYKFNEKVATTLANICCHPNGFLPQGA 167 Query: 162 PSSPVISNMICFRMDKELQTIAKESRCIYTRYADDITFSSYQPLTLLFEGPPPPAGNFPP 221 +SP+ISN+IC R+DKE +AK +RC YTRYADDITFS+ + + FP Sbjct: 168 ATSPIISNIICNRIDKEFSKLAKNNRCQYTRYADDITFSTSRRV-------------FPH 214 Query: 222 DL---------LKDRLRGAFRSNGFAINPQKIHYADKHSRRTVTGLKINEFVNVDRKYVR 272 D+ L + GF IN +K + +TVTG+ +NE +NV R YVR Sbjct: 215 DIAYIKEGSIFLNSNVISIVEYQGFKINKEKTRLQNYRQNQTVTGITVNEKLNVKRSYVR 274 Query: 273 NTRAALFVTE--TRGAAVAQKILKDKYG-------REATLASHLRGRISWVGHIKGPSDP 323 R+ L E A++I ++KY + + L+G IS VGH+KG DP Sbjct: 275 RIRSILHCIEKNVEDLQKAEQIFEEKYPFRQKKYLDNINMFAILKGMISHVGHVKGKDDP 334 Query: 324 IFRGLASRYNKL-FPSEKLEILPTNLE----IRERAVWVVEH--------WADDAAEG-- 368 ++ LA R+NK+ + SE I P LE E +++++ + +D E Sbjct: 335 LYLKLAKRFNKISYLSE--TISPFKLESLKKFHETYTYIIDYDDKVPLVCFENDKMEEIL 392 Query: 369 SAQGTAFFLKSVGLVTAWHCVEGATEIAVYHPSKTSN--------------KFKVTVAKN 414 QGT F LK VGL+T H +E A E A+ K +N K+K V+K Sbjct: 393 YGQGTGFLLKGVGLITNAHVIEDAIE-AIKDNKKFNNEYGISFFRGNYPDLKYKAKVSKY 451 Query: 415 DAHRDLAVL---AHEIPVTEYYEFDISKRTFKVGDNTTAIGFPSFGPGDKINVRSGSITS 471 D +D+A+L I + YE++I K G IG+P + G +I + +G + Sbjct: 452 DLDKDIAILDIKGFNID-NQGYEYNID---MKDGQKIELIGYPDYKIGQEIKIETGHLKG 507 Query: 472 L-----PTKSAVPMIEVTQKLSQGMSGGPLLDDDGAVAGVNHKGG 511 + T + E++ + G SGGP++++ V GV KG Sbjct: 508 IRKHRDSTGTFHSRREISAIIYGGNSGGPIINESNEVIGVAVKGA 552 >ref|YP_126373.1| hypothetical protein lpl1015 [Legionella pneumophila str. Lens] emb|CAH15250.1| hypothetical protein lpl1015 [Legionella pneumophila str. Lens] emb|CBW99294.1| hypothetical protein LPW_10721 [Legionella pneumophila 130b] Length = 541 Score = 256 bits (653), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 169/534 (31%), Positives = 266/534 (49%), Gaps = 57/534 (10%) Query: 15 TVPNELTCEAELLKFLALSTAELKK-IWWFRGRMYQKFEISKGGQKKRVISAPDRRLKML 73 T+ L+ ++ + L K I+ +Y F I K + R I+AP+R LK + Sbjct: 4 TINKNFNSLDTLVSLFGINYSNLAKLIYPTTNNLYHSFSIPKKSGELREINAPNRILKEI 63 Query: 74 QTKIASSLASIYRPRNPVHGFVDGRSVKTNATAHLRSKFVLNLDIEGFFMAITEGRVSGL 133 Q K+ + L S Y RN HGF++ R+V TNA H++ +LNLD++ FF +I GRV L Sbjct: 64 QYKLLNELQSYYSKRNCTHGFINERNVVTNARPHVKKNIILNLDLKEFFQSIHFGRVRNL 123 Query: 134 MGA--LGVDGRVAEILARICCNEGVLPQGAPSSPVISNMICFRMDKELQTIAKESRCIYT 191 + + VA +LA+ICC++G LPQGAP+SP+I+N+IC+++DKEL +A + C T Sbjct: 124 FMSNPFNFNKNVATVLAQICCHKGHLPQGAPTSPLITNLICYKLDKELSKLAFNNNCTVT 183 Query: 192 RYADDITFSSYQPLTLLFEGPPPPAGNFPPDLL----------KDRLRGAFRSNGFAINP 241 RY DDITFS P D+L +L NGF IN Sbjct: 184 RYVDDITFSF-----------NCSHDKIPRDILDGISGESISISKKLVNIINKNGFEINY 232 Query: 242 QKIHYADKHSRRTVTGLKINEFVNVDRKYVRNTRAALFVTETRGAAVAQKILKD------ 295 +K+ + + R+ VTG+ N VN+ RKY++ T++ L+ + A++ + Sbjct: 233 KKVRLSSSNQRQQVTGIVTNVKVNLPRKYIKKTQSMLYAWKNFSLPNAEQAHINNYLEKP 292 Query: 296 -KYGR-------EATLASHLRGRISWVGHIKGPSDPIFRGLASRYNKLFPSEKLEILPTN 347 KY R ++ ++GRI+++G ++G SD I+R L +Y +L + E+L + Sbjct: 293 YKYQRFIRYNKDKSYFNLMIKGRINYIGMVRGQSDCIYRKLLYQYTELIGNPNKELLKSV 352 Query: 348 LEIRERAVWVVEHWADDAAEGSAQGTAFFLKSVGLVTAWHCVEGATE-----IAVYHPSK 402 + +V++ E+ + S QGTAFFLK +GLVTA H VEG E + + + Sbjct: 353 DDCLADSVFITEYPIE-----SKQGTAFFLKDIGLVTAAHVVEGIHETNSCFLDFFRHYE 407 Query: 403 TSNKFKVTVAKNDAHRDLAVLA-----HEIPVTEYYEFDISKRTFKVGDNTTAIGFPSFG 457 K K T+ K +D+A+ +P + D SK +GD IGFP + Sbjct: 408 VKIKRKATLFKKSEEKDIAIFYVGDDFKNLPSLKV--GDDSK--LAIGDQIKLIGFPDYN 463 Query: 458 PGDKINVRSGSITSLPTKSAVPMIEVTQKLSQGMSGGPLLDDDGAVAGVNHKGG 511 D G I T + + V ++ G+SGGP+ ++ V GV +G Sbjct: 464 YHDSYLSNLGKIIQKKTMYNLDVWIVDLPINFGVSGGPVFNNKNEVIGVALQGS 517 >ref|YP_002559740.1| hypothetical protein MCCL_0337 [Macrococcus caseolyticus JCSC5402] dbj|BAH17044.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 540 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 170/526 (32%), Positives = 263/526 (50%), Gaps = 51/526 (9%) Query: 24 AELLKFLALSTAELKKIWW-FRGRMYQKFEISKGGQKKRVISAPDRRLKMLQTKIASSLA 82 EL L T L++I + Y FEI K + R I +P +L LQ K+A+ L Sbjct: 10 TELSFVLGYKTGHLRRILFDINSSSYTSFEIPKKNGEVRKIYSPHSQLLFLQKKVAAILE 69 Query: 83 SIYRPRNPVHGFVDGRSVKTNATAHLRSKFVLNLDIEGFFMAITEGRV-SGLMGALGVDG 141 + + P GF+ +S++ NA HL+ K+++N+D++ FF +IT GRV S + +D Sbjct: 70 NSFNPHYKSFGFIKRKSIEKNAKLHLKKKYLINIDLKNFFESITAGRVYSMFVNYFKLDR 129 Query: 142 RVAEILARICCN-EGVLPQGAPSSPVISNMICFRMDKELQTIAKESRCIYTRYADDITFS 200 +A IL ICC+ +G LPQGAP+SP+I+N++C +DKEL ++K Y+RYADDITFS Sbjct: 130 NIAAILTNICCHPDGFLPQGAPTSPIITNILCKTLDKELDNLSKRYSITYSRYADDITFS 189 Query: 201 SYQPLTLLFEGPPPPAGNFPPDLLKDRLRGAFRSNGFAINPQKIHYADKHSRRTVTGLKI 260 S + F +LL D ++ NGF IN K Y+ + R+ VTG+ + Sbjct: 190 SNKAFNSYFLT--------QEELLSDDIKRKIEQNGFLINENKFRYSKFNQRKEVTGIIV 241 Query: 261 NEFVNVDRKYVRNTRAALFVTETRGAAVA---QKILKDKYGREAT--LASHLRGRISWVG 315 NE +NVDR+Y+R RA L+ E + K +K Y + L + ++G IS+ Sbjct: 242 NEKLNVDRRYIRKIRAMLYSIENNLDNLEVPRTKFVKSHYKGDTIEDLLNVIKGMISYTT 301 Query: 316 HIKGPSDPIFRGLASRYNKLFPSEKLEILPTN------LEIRERAVWVVEH---WADDAA 366 +KG ++ I L R+N + E LEI L+I E V V++ + + Sbjct: 302 MVKGKNN-ISTKLEMRFNDIL--ECLEIDSVKPIKVKPLDINEEKVCVIKLEKVFFESKN 358 Query: 367 EG-----SAQGTAFFLKSVGLVTAWHCVEGATE---------------IAVYHPSKTSNK 406 G QGT F LK+VG+V+ +H E E I +Y S K Sbjct: 359 SGFYDIDYGQGTGFILKNVGIVSNYHVFEFIIEELEKGKKPICTDKYFINLYFGINCSKK 418 Query: 407 FKVTVAKNDAHRDLAVLA-HEIPVTEYYEFDISKRTFKVGDNTTAIGFPSFGPGDKINVR 465 K V D +DL +L ++ + E F++ + T + T +G+PS+ GD+I Sbjct: 419 VKAKVLNYDKDKDLVILQPKDLNILE-LGFELEEGTIENNSKVTLLGYPSYNEGDRIKEE 477 Query: 466 SGSIT-SLPTKSAVPMIEVTQKLSQGMSGGPLLDDDGAVAGVNHKG 510 G + + K E++ + G SGGP+L++ G V GV +G Sbjct: 478 QGKLLRKINDKKDFEKFEISSVIHAGNSGGPVLNNKGKVLGVATEG 523