BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0124.0004.p         (158 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2ISK2.2|MNMA_RHOP2 RecName: Full=tRNA-specific 2-thiouridyla...   246   8e-64
ref|YP_487719.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudo...   246   8e-64
ref|YP_001990509.1| tRNA-specific 2-thiouridylase MnmA [Rhodopse...   241   2e-62
ref|NP_946657.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudo...   241   3e-62
sp|Q6NA79.2|MNMA_RHOPA RecName: Full=tRNA-specific 2-thiouridyla...   241   3e-62

>sp|Q2ISK2.2|MNMA_RHOP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 398

 Score =  246 bits (628), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 121/158 (76%), Positives = 136/158 (86%)

Query: 1   VIGQHQGIVHFTVGQRKGLGIASGSPLYVVKLDAATRRVVVGPREALRMDRIALRDVNWI 60
           V+G H GIVHFTVGQR+GLGIAS +PLYV++LDAA RRVVVGPREALRM+RI LRDVNWI
Sbjct: 241 VLGSHPGIVHFTVGQRRGLGIASRAPLYVLRLDAARRRVVVGPREALRMERIVLRDVNWI 300

Query: 61  GDGALDRVIGEGIEIYVRVRSTRAPQPAWLRAADGGYEVELVAGEEGVSPGQACVFYDAA 120
           GDGALDR +G+G+E++VRVRSTRAPQPAWLRA  GGYEVELVAGEEGVSPGQACVFYDAA
Sbjct: 301 GDGALDRAVGDGLELFVRVRSTRAPQPAWLRAVKGGYEVELVAGEEGVSPGQACVFYDAA 360

Query: 121 SGQARVLGGGFIRSASASRAIRAATQDALAPIAEAVRG 158
            GQARVLGGGFI+SA+       A  DA +P   A+RG
Sbjct: 361 EGQARVLGGGFIKSAAPRSIAEPAHDDAASPALAAMRG 398


>ref|YP_487719.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris
           HaA2]
 gb|ABD08808.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopseudomonas palustris HaA2]
          Length = 402

 Score =  246 bits (628), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 121/158 (76%), Positives = 136/158 (86%)

Query: 1   VIGQHQGIVHFTVGQRKGLGIASGSPLYVVKLDAATRRVVVGPREALRMDRIALRDVNWI 60
           V+G H GIVHFTVGQR+GLGIAS +PLYV++LDAA RRVVVGPREALRM+RI LRDVNWI
Sbjct: 245 VLGSHPGIVHFTVGQRRGLGIASRAPLYVLRLDAARRRVVVGPREALRMERIVLRDVNWI 304

Query: 61  GDGALDRVIGEGIEIYVRVRSTRAPQPAWLRAADGGYEVELVAGEEGVSPGQACVFYDAA 120
           GDGALDR +G+G+E++VRVRSTRAPQPAWLRA  GGYEVELVAGEEGVSPGQACVFYDAA
Sbjct: 305 GDGALDRAVGDGLELFVRVRSTRAPQPAWLRAVKGGYEVELVAGEEGVSPGQACVFYDAA 364

Query: 121 SGQARVLGGGFIRSASASRAIRAATQDALAPIAEAVRG 158
            GQARVLGGGFI+SA+       A  DA +P   A+RG
Sbjct: 365 EGQARVLGGGFIKSAAPRSIAEPAHDDAASPALAAMRG 402


>ref|YP_001990509.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris
           TIE-1]
 gb|ACF00034.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopseudomonas palustris TIE-1]
          Length = 401

 Score =  241 bits (616), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 122/158 (77%), Positives = 135/158 (85%), Gaps = 1/158 (0%)

Query: 1   VIGQHQGIVHFTVGQRKGLGIASGSPLYVVKLDAATRRVVVGPREALRMDRIALRDVNWI 60
           V+GQH GIVHFTVGQR+GLGIAS SPLYV++LDAA R+VVVGPREAL MDRI LRD+NWI
Sbjct: 245 VLGQHPGIVHFTVGQRRGLGIASRSPLYVLRLDAARRQVVVGPREALLMDRIVLRDINWI 304

Query: 61  GDGALDRVIGEGIEIYVRVRSTRAPQPAWLRAADGGYEVELVAGEEGVSPGQACVFYDAA 120
           GDGALD VIG+G+E++VRVRSTRAPQPAWLRAA+GGYEVELV GEEGVSPGQACVFYDAA
Sbjct: 305 GDGALDDVIGDGLELFVRVRSTRAPQPAWLRAANGGYEVELVVGEEGVSPGQACVFYDAA 364

Query: 121 SGQARVLGGGFIRSASASRAIRAATQDALAPIAEAVRG 158
            GQARVLGGGFI+SA A R      +   AP   A RG
Sbjct: 365 EGQARVLGGGFIKSA-APRRFEGGREQIEAPALAAARG 401


>ref|NP_946657.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris
           CGA009]
 emb|CAE26749.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
           [Rhodopseudomonas palustris CGA009]
          Length = 401

 Score =  241 bits (614), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 121/158 (76%), Positives = 135/158 (85%), Gaps = 1/158 (0%)

Query: 1   VIGQHQGIVHFTVGQRKGLGIASGSPLYVVKLDAATRRVVVGPREALRMDRIALRDVNWI 60
           V+GQH GIVHFTVGQR+GLGIAS SPLYV++LDAA R+VVVGPREAL MDRI LRD+NWI
Sbjct: 245 VLGQHPGIVHFTVGQRRGLGIASRSPLYVLRLDAAQRQVVVGPREALLMDRIVLRDINWI 304

Query: 61  GDGALDRVIGEGIEIYVRVRSTRAPQPAWLRAADGGYEVELVAGEEGVSPGQACVFYDAA 120
           GDG+LD VIG+G+E++VRVRSTRAPQPAWLRAA+GGYEVELV GEEGVSPGQACVFYDAA
Sbjct: 305 GDGSLDDVIGDGLELFVRVRSTRAPQPAWLRAANGGYEVELVVGEEGVSPGQACVFYDAA 364

Query: 121 SGQARVLGGGFIRSASASRAIRAATQDALAPIAEAVRG 158
            GQARVLGGGFI+SA A R      +   AP   A RG
Sbjct: 365 EGQARVLGGGFIKSA-APRRFEGGREQIEAPALAAARG 401


>sp|Q6NA79.2|MNMA_RHOPA RecName: Full=tRNA-specific 2-thiouridylase mnmA
          Length = 397

 Score =  241 bits (614), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 121/158 (76%), Positives = 135/158 (85%), Gaps = 1/158 (0%)

Query: 1   VIGQHQGIVHFTVGQRKGLGIASGSPLYVVKLDAATRRVVVGPREALRMDRIALRDVNWI 60
           V+GQH GIVHFTVGQR+GLGIAS SPLYV++LDAA R+VVVGPREAL MDRI LRD+NWI
Sbjct: 241 VLGQHPGIVHFTVGQRRGLGIASRSPLYVLRLDAAQRQVVVGPREALLMDRIVLRDINWI 300

Query: 61  GDGALDRVIGEGIEIYVRVRSTRAPQPAWLRAADGGYEVELVAGEEGVSPGQACVFYDAA 120
           GDG+LD VIG+G+E++VRVRSTRAPQPAWLRAA+GGYEVELV GEEGVSPGQACVFYDAA
Sbjct: 301 GDGSLDDVIGDGLELFVRVRSTRAPQPAWLRAANGGYEVELVVGEEGVSPGQACVFYDAA 360

Query: 121 SGQARVLGGGFIRSASASRAIRAATQDALAPIAEAVRG 158
            GQARVLGGGFI+SA A R      +   AP   A RG
Sbjct: 361 EGQARVLGGGFIKSA-APRRFEGGREQIEAPALAAARG 397