BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0123.0005.p         (119 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001208073.1| putative response regulator receiver [Bradyr...   230   4e-59
ref|NP_774368.1| two-component response regulator [Bradyrhizobiu...   228   2e-58
ref|YP_319548.1| response regulator receiver [Nitrobacter winogr...   226   1e-57
ref|YP_530671.1| response regulator receiver domain-containing p...   226   1e-57
ref|YP_002287952.1| response regulator receiver domain protein [...   226   1e-57

>ref|YP_001208073.1| putative response regulator receiver [Bradyrhizobium sp. ORS 278]
 ref|YP_001237530.1| putative response regulator receiver [Bradyrhizobium sp. BTAi1]
 emb|CAL79858.1| Putative response regulator receiver (CheY-like protein)
           [Bradyrhizobium sp. ORS 278]
 gb|ABQ33624.1| Putative response regulator receiver (CheY-like protein)
           [Bradyrhizobium sp. BTAi1]
          Length = 119

 Score =  230 bits (587), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 114/119 (95%), Positives = 117/119 (98%)

Query: 1   MPKILLAEDDTDMRRFLVKALENAGFKVSPHDNGMSAYQRLREEPFEMLLTDIVMPEMDG 60
           M KILLAEDD DMRRFLVKALENAGF+VSPHDNGMSAYQRLREEPFEMLLTDIVMPEMDG
Sbjct: 1   MHKILLAEDDNDMRRFLVKALENAGFQVSPHDNGMSAYQRLREEPFEMLLTDIVMPEMDG 60

Query: 61  IELARRASELDPDIKIMFITGFAAVALNSDSEAPKNAKVLAKPVHLRELVSEVNKLLAA 119
           IELARRASELDPDIKIMFITGFAAVALNSDSEAPKNAKVL+KPVHLRELVSEVNK+LAA
Sbjct: 61  IELARRASELDPDIKIMFITGFAAVALNSDSEAPKNAKVLSKPVHLRELVSEVNKMLAA 119


>ref|NP_774368.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC52993.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 119

 Score =  228 bits (582), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 112/119 (94%), Positives = 117/119 (98%)

Query: 1   MPKILLAEDDTDMRRFLVKALENAGFKVSPHDNGMSAYQRLREEPFEMLLTDIVMPEMDG 60
           MPKILLAEDD DMRRFLVKALENAGF+VS HDNGM+AYQRLREEPFEMLLTDIVMPEMDG
Sbjct: 1   MPKILLAEDDNDMRRFLVKALENAGFQVSSHDNGMAAYQRLREEPFEMLLTDIVMPEMDG 60

Query: 61  IELARRASELDPDIKIMFITGFAAVALNSDSEAPKNAKVLAKPVHLRELVSEVNKLLAA 119
           IELARRASELDPDIKIMFITGFAAVALNSDS+APKNAKVL+KPVHLRELVSEVNK+LAA
Sbjct: 61  IELARRASELDPDIKIMFITGFAAVALNSDSDAPKNAKVLSKPVHLRELVSEVNKMLAA 119


>ref|YP_319548.1| response regulator receiver [Nitrobacter winogradskyi Nb-255]
 gb|ABA06196.1| response regulator receiver [Nitrobacter winogradskyi Nb-255]
          Length = 135

 Score =  226 bits (576), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 112/119 (94%), Positives = 116/119 (97%)

Query: 1   MPKILLAEDDTDMRRFLVKALENAGFKVSPHDNGMSAYQRLREEPFEMLLTDIVMPEMDG 60
           M KILLAEDD DMRRFLVKALENAGFKVS +DNG+SAYQRLREEPFEMLLTDIVMPEMDG
Sbjct: 17  MHKILLAEDDNDMRRFLVKALENAGFKVSSYDNGLSAYQRLREEPFEMLLTDIVMPEMDG 76

Query: 61  IELARRASELDPDIKIMFITGFAAVALNSDSEAPKNAKVLAKPVHLRELVSEVNKLLAA 119
           IELARRASELDPDIKIMFITGFAAVALNSDSEAPKNAKVL+KPVHLRELVSEVNK+LAA
Sbjct: 77  IELARRASELDPDIKIMFITGFAAVALNSDSEAPKNAKVLSKPVHLRELVSEVNKMLAA 135


>ref|YP_530671.1| response regulator receiver domain-containing protein
           [Rhodopseudomonas palustris BisB18]
 gb|ABD86352.1| response regulator receiver domain protein (CheY-like)
           [Rhodopseudomonas palustris BisB18]
          Length = 119

 Score =  226 bits (575), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 112/119 (94%), Positives = 116/119 (97%)

Query: 1   MPKILLAEDDTDMRRFLVKALENAGFKVSPHDNGMSAYQRLREEPFEMLLTDIVMPEMDG 60
           M KILLAEDD DMRRFLVKALENAGF+VS +DNG+SAYQRLREEPFEMLLTDIVMPEMDG
Sbjct: 1   MHKILLAEDDNDMRRFLVKALENAGFQVSSYDNGLSAYQRLREEPFEMLLTDIVMPEMDG 60

Query: 61  IELARRASELDPDIKIMFITGFAAVALNSDSEAPKNAKVLAKPVHLRELVSEVNKLLAA 119
           IELARRASELDPDIKIMFITGFAAVALNSDSEAPKNAKVLAKPVHLRELVSEVNK+LAA
Sbjct: 61  IELARRASELDPDIKIMFITGFAAVALNSDSEAPKNAKVLAKPVHLRELVSEVNKMLAA 119


>ref|YP_002287952.1| response regulator receiver domain protein [Oligotropha
           carboxidovorans OM5]
 ref|YP_004633932.1| response regulator receiver protein [Oligotropha carboxidovorans
           OM5]
 gb|ACI92087.1| response regulator receiver domain protein [Oligotropha
           carboxidovorans OM5]
 gb|AEI04061.1| response regulator receiver protein [Oligotropha carboxidovorans
           OM4]
 gb|AEI07691.1| response regulator receiver protein [Oligotropha carboxidovorans
           OM5]
          Length = 122

 Score =  226 bits (575), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 112/117 (95%), Positives = 115/117 (98%)

Query: 3   KILLAEDDTDMRRFLVKALENAGFKVSPHDNGMSAYQRLREEPFEMLLTDIVMPEMDGIE 62
           KILLAEDD DMRRFLVKALENAGF+VS +DNG+SAYQRLREEPFEMLLTDIVMPEMDGIE
Sbjct: 6   KILLAEDDNDMRRFLVKALENAGFQVSSYDNGLSAYQRLREEPFEMLLTDIVMPEMDGIE 65

Query: 63  LARRASELDPDIKIMFITGFAAVALNSDSEAPKNAKVLAKPVHLRELVSEVNKLLAA 119
           LARRASELDPDIKIMFITGFAAVALNSDSEAPKNAKVLAKPVHLRELVSEVNKLLAA
Sbjct: 66  LARRASELDPDIKIMFITGFAAVALNSDSEAPKNAKVLAKPVHLRELVSEVNKLLAA 122