BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0122.0003.p (637 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_780956.1| diguanylate cyclase [Rhodopseudomonas palustris... 582 e-164 ref|YP_570584.1| GGDEF domain-containing protein [Rhodopseudomon... 553 e-155 ref|YP_485531.1| diguanylate cyclase [Rhodopseudomonas palustris... 509 e-142 ref|YP_531996.1| diguanylate cyclase [Rhodopseudomonas palustris... 504 e-140 ref|NP_948954.1| diguanylate cyclase [Rhodopseudomonas palustris... 483 e-134 >ref|YP_780956.1| diguanylate cyclase [Rhodopseudomonas palustris BisA53] gb|ABJ05976.1| diguanylate cyclase with PAS/PAC sensor [Rhodopseudomonas palustris BisA53] Length = 641 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 312/612 (50%), Positives = 424/612 (69%), Gaps = 2/612 (0%) Query: 15 KLFSPTAIVAAVVPAMSIFVLGLLIWKAVEARTTALAQGERDIRNLTHSLAEHASHSVQA 74 +L +P IVA V A+S VLGL+ WKA+ AR ALAQ + + NLTHSL+EH SH++QA Sbjct: 14 RLSAPGIIVALFVLAVSSCVLGLMAWKALAARDAALAQSKSETLNLTHSLSEHVSHTIQA 73 Query: 75 IDVAMNAMVDLLKYQKPRVDRFNAALRKTADALPQIKEIGVIDPDGNRIYSSAAELPAHN 134 D+ M + L++ P D+F LR ADALPQ+ + +D G+ I++S + P HN Sbjct: 74 ADIVMTEIAGSLRHYTPPKDQFGRRLRDLADALPQLGYVAALDAAGDFIHASGVDTPLHN 133 Query: 135 NADRGYFIGHRDSTDASLHISEPLQSRLTGQPTIVLSRRVTREDGSFGGVLFATIETSYF 194 N+DR YFI HRD D L IS PL SR TG PT+VL++R+ DGSF G+L ATI+T YF Sbjct: 134 NSDRSYFIHHRDHDDDDLLISGPLLSRTTGLPTVVLTKRMENADGSFAGILLATIDTGYF 193 Query: 195 DNFYQAFKFGPHAGITLLRLDGIVLAHWPAGKWNKEVS--AAFKAKIEQDRTGYTKTTSP 252 ++FY++ + G + I LLR DGI+L HWP+ + ++VS F+ ++ GY K+ S Sbjct: 194 NHFYKSLQLGDNGTIGLLRTDGILLMHWPSMESGRDVSHRELFRQRLPNSPVGYYKSVSH 253 Query: 253 FDGRVKYLGFERASQYPIVVTVALPEAQVLAAWHDDLRNDLLVAIILMGSVILFAILLGK 312 FDG KYL +++++ YPIVVTVA PE VLA+W +DLR+DL+VA+ L+G + L A+LL Sbjct: 254 FDGISKYLAYKKSTLYPIVVTVARPEEDVLASWREDLRSDLIVALSLLGGMTLMAVLLAI 313 Query: 313 EFAKRTKVARMLREREARYRLLADNIADVVILLDRNGRFLFVSQSVETILGRNPDDLIGK 372 + R ++ R LREREA YRLLADNIADVV D + F SQS ++LG P++LIG Sbjct: 314 QLRFRLRIERELREREAHYRLLADNIADVVFQFDLARNYQFASQSTVSMLGWTPEELIGT 373 Query: 373 SCFEFVHSDHLADVARATSELTNWTTTKTVEFKTFRADGSEVWVEINFKLAGAAEDHHAI 432 SC++ VH D + + ++LT + T + F+ R DGS VWVE N+ LA + A Sbjct: 374 SCYDLVHPDDVETLRGREAQLTEPSVTHSHVFRLRRRDGSFVWVEANYNLARPVDGEPAS 433 Query: 433 EVVGVLRDVTERRKMEDELNALNIRLSELATTDGLTTLANRRSFDSALPREFRDREQISL 492 +V V+RD+T+R++MED+LNALN RL+E+ATTD LT LANRR+ D L REF Q+++ Sbjct: 434 HIVAVVRDITQRKRMEDQLNALNSRLAEMATTDSLTGLANRRTLDVFLRREFSSARQLAV 493 Query: 493 IMLDIDHFKGFNDTQGHQAGDECLRRVARVIADATTNTTALAARYGGEEFAIILPGVGEQ 552 ++LDIDHFKGFND+ GHQAGDECL+++A V+A+AT T L+ARYGGEEFA++LPGV E Sbjct: 494 LLLDIDHFKGFNDSLGHQAGDECLKKIAVVLAEATDGTPGLSARYGGEEFALVLPGVRED 553 Query: 553 DALKVAEAMRLTVRSLAIANPAARRGVVSISLGIASRSAATASETELLGRADLALYEAKR 612 AL +A+A+RL VR+L IANPA+ G V++S+GIA +S AT +ET LLG AD ALY AKR Sbjct: 554 AALAIADAVRLQVRALDIANPASDFGCVTVSIGIAIKSPATRNETALLGEADQALYAAKR 613 Query: 613 SGRDRTVLASSL 624 GR+ V S+L Sbjct: 614 QGRNCCVCGSTL 625 >ref|YP_570584.1| GGDEF domain-containing protein [Rhodopseudomonas palustris BisB5] gb|ABE40683.1| diguanylate cyclase with PAS/PAC sensor [Rhodopseudomonas palustris BisB5] Length = 644 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 283/627 (45%), Positives = 410/627 (65%), Gaps = 4/627 (0%) Query: 7 PDSPAKLPKLFSPTAIVAAVVPAMSIFVLGLLIWKAVEARTTALAQGERDIRNLTHSLAE 66 P +P+ + +L +P+ IV + MS VLGL++WKA +AR AL Q E +IRNL SL E Sbjct: 6 PSAPSLIGRLSTPSLIVTMFLLGMSACVLGLVVWKAYDARRIALVQSETEIRNLVRSLTE 65 Query: 67 HASHSVQAIDVAMNAMVDLLKYQKPRVDRFNAALRKTADALPQIKEIGVIDPDGNRIYSS 126 HASH++Q++DV ++ +V LL+++ FN LR+ D LP ++ + V+D G+ ++S Sbjct: 66 HASHTIQSVDVVVDDLVALLRFRGTPTTVFNDRLREIVDNLPHLRRLAVLDERGDLRFAS 125 Query: 127 AAELPAHNNADRGYFIGHRDSTDASLHISEPLQSRLTGQPTIVLSRRVTREDGSFGGVLF 186 A++P N ADR YF HRD+ L I+ PL R + QP I L+RR+ +G F GV+ Sbjct: 126 IAQVPHINYADRSYFNHHRDNPHRELLITGPLLPRTSSQPVIALTRRIETPEGQFAGVVV 185 Query: 187 ATIETSYFDNFYQAFKFGPHAGITLLRLDGIVLAHWPA-GKWNKEVSAA--FKAKIEQDR 243 ATIE+ YF FY+ FK G + I L+ DG VL WPA +++S F+ +++ Sbjct: 186 ATIESDYFLEFYKMFKLGTNGSINLINGDGNVLIRWPALSTQVRDLSRGNLFQKRLKDSP 245 Query: 244 TGYTKTTSPFDGRVKYLGFERASQYPIVVTVALPEAQVLAAWHDDLRNDLLVAIILMGSV 303 TGY + SPFDG VKY +E++ +YP++VTV+ EA VL+ W+++LR+D+LVAI L+ + Sbjct: 246 TGYHRIVSPFDGLVKYYAYEKSGRYPLIVTVSRSEASVLSGWYEELRSDILVAIALLACI 305 Query: 304 ILFAILLGKEFAKRTKVARMLREREARYRLLADNIADVVILLDRNGRFLFVSQSVETILG 363 +L A LLG + R +V +LREREAR+RL+ NIADVV+LLD G +FVSQS + +LG Sbjct: 306 VLLATLLGSQLRYRQRVENILREREARFRLIDANIADVVLLLDNKGVLVFVSQSSKAVLG 365 Query: 364 RNPDDLIGKSCFEFVHSDHLADVARATSELTNWTTTKTVEFKTFRADGSEVWVEINFKLA 423 P+ LIG+SCF+ VH D + + +L + ++ EF+ R DG+ +W+E NF+ Sbjct: 366 FTPEQLIGQSCFDLVHPDDASSLRLHNLQLDQPSGSERREFRLVRPDGTMIWLEANFRFT 425 Query: 424 GAAEDHHAIEVVGVLRDVTERRKMEDELNALNIRLSELATTDGLTTLANRRSFDSALPRE 483 +E ++V LRDVT+R++MEDE+ ALN RL+E+A TDGLT L NRRS D + Sbjct: 426 -KSERTRRCDIVCTLRDVTQRKRMEDEVEALNFRLAEMAKTDGLTGLPNRRSLDDFINNV 484 Query: 484 FRDREQISLIMLDIDHFKGFNDTQGHQAGDECLRRVARVIADATTNTTALAARYGGEEFA 543 F ++++M+DID+FKG ND GHQAGDE LR++ +++ D NT LAARYGGEEFA Sbjct: 485 FATHADLAVLMIDIDYFKGLNDCLGHQAGDEGLRQIGKLLGDVVANTGGLAARYGGEEFA 544 Query: 544 IILPGVGEQDALKVAEAMRLTVRSLAIANPAARRGVVSISLGIASRSAATASETELLGRA 603 +ILPG + A+ +AE R+ +R LA+ANPAA +++S+G+ASR++AT + L A Sbjct: 545 VILPGSDAKAAMALAETARIKIRDLALANPAAPNQRLTVSIGVASRTSATPDASTLFREA 604 Query: 604 DLALYEAKRSGRDRTVLASSLAGDNHS 630 D+ALYEAKR RD +V A GD S Sbjct: 605 DIALYEAKRRSRDCSVAAPVYLGDAGS 631 >ref|YP_485531.1| diguanylate cyclase [Rhodopseudomonas palustris HaA2] gb|ABD06620.1| diguanylate cyclase with PAS/PAC sensor [Rhodopseudomonas palustris HaA2] Length = 619 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 269/605 (44%), Positives = 379/605 (62%), Gaps = 2/605 (0%) Query: 27 VPAMSIFVLGLLIWKAVEARTTALAQGERDIRNLTHSLAEHASHSVQAIDVAMNAMVDLL 86 V AMS VL L++WK +AR ALAQ E ++RNL HSLAEHASH++Q+ DV M+ +V + Sbjct: 3 VLAMSACVLALVVWKGYDARRNALAQSETEMRNLAHSLAEHASHTIQSADVVMDDLVAFI 62 Query: 87 KYQK-PRVDRFNAALRKTADALPQIKEIGVIDPDGNRIYSSAAELPAHNNADRGYFIGHR 145 ++Q P RF+A LR+ ++ LPQIKE+ +D G+ ++S PA NNADR YF+ HR Sbjct: 63 RFQPFPDRARFDARLREVSEKLPQIKELATLDAKGDVDHASVTPPPAINNADRDYFVYHR 122 Query: 146 DSTDASLHISEPLQSRLTGQPTIVLSRRVTREDGSFGGVLFATIETSYFDNFYQAFKFGP 205 D D L I+ P+ SR +GQP I ++RR+ DG F G++ ATIE+ YF FY+ F G Sbjct: 123 DHADPKLRITGPIVSRASGQPVIAVTRRLETADGGFAGIVVATIESDYFTEFYKTFDLGA 182 Query: 206 HAGITLLRLDGIVLAHWPAGKWNKEVSAAFKAKIEQDRTGYTKTTSPFDGRVKYLGFERA 265 +GITL DG +L WP + S F+ + + GY SPFDG KY +E+ Sbjct: 183 GSGITLSGGDGHILVRWPTAAGDLSKSRLFERMLPRSPVGYNLAISPFDGLQKYYAYEQL 242 Query: 266 SQYPIVVTVALPEAQVLAAWHDDLRNDLLVAIILMGSVILFAILLGKEFAKRTKVARMLR 325 S+YP+VVTVA E VLA W + +R+D +VA + ++L A L + R + R+LR Sbjct: 243 SRYPLVVTVARTEVSVLADWREAVRSDAVVATAALACIVLLAAGLAVQLRNRERFERLLR 302 Query: 326 EREARYRLLADNIADVVILLDRNGRFLFVSQSVETILGRNPDDLIGKSCFEFVHSDHLAD 385 ER+AR+RL+ NI DVV++LD G FVS S+ET+LG P++++G+ F+ +H D +A Sbjct: 303 ERDARHRLIDANIGDVVVVLDGRGVVTFVSMSIETVLGFRPEEVLGRVYFDMMHPDDVAG 362 Query: 386 VARATSELTNWTTTKTVEFKTFRADGSEVWVEINFKLAGAAEDHHAIEVVGVLRDVTERR 445 + L + EF+ RADG+ VW+E NF+ + +V LRDVT R+ Sbjct: 363 LQAMGKRLPDVPNGLRAEFRMERADGTMVWLEANFRFT-RQDGRPGRSIVCTLRDVTRRK 421 Query: 446 KMEDELNALNIRLSELATTDGLTTLANRRSFDSALPREFRDREQISLIMLDIDHFKGFND 505 +MEDE+ ALN RL+E+A TD LT L NRR+ D + EF +S++M+D+D FKGFND Sbjct: 422 EMEDEVEALNSRLAEMARTDALTGLPNRRALDDFIAGEFEASHDLSVLMIDVDDFKGFND 481 Query: 506 TQGHQAGDECLRRVARVIADATTNTTALAARYGGEEFAIILPGVGEQDALKVAEAMRLTV 565 GH AGD+ LR++ R++A AARYGGEEF I+LPG G+ A+ AE ++ + Sbjct: 482 RLGHHAGDDALRQLGRLLAGTAAGAGGFAARYGGEEFTIVLPGTGKAVAIAFAEELQAAI 541 Query: 566 RSLAIANPAARRGVVSISLGIASRSAATASETELLGRADLALYEAKRSGRDRTVLASSLA 625 R+L I NP+A RG +++S+GIA + A+ LL AD+ALYEAKR GRD +V A + Sbjct: 542 RALGIVNPSAARGRLTVSIGIADKIASICDPATLLRCADIALYEAKRRGRDCSVAAPAFV 601 Query: 626 GDNHS 630 GD S Sbjct: 602 GDAGS 606 >ref|YP_531996.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18] gb|ABD87677.1| diguanylate cyclase [Rhodopseudomonas palustris BisB18] Length = 635 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 294/628 (46%), Positives = 392/628 (62%), Gaps = 9/628 (1%) Query: 3 PIDVPDSPAKLPKLFSPTAIVAAVVPAMSIFVLGLLIWKAVEARTTALAQGERDIRNLTH 62 P P L + S ++A V AMS V+GL+ WKA AR + LAQ NL H Sbjct: 2 PQHTPRMARLLSRPVSAAIVIALFVAAMSGAVIGLVAWKAATARQSELAQRSAANENLAH 61 Query: 63 SLAEHASHSVQAIDVAMNAMVDLLKYQKPRVDRFNAALRKTADALPQIKEIGVIDPDGNR 122 SLAE ASH++Q++DVAM+ + D Q +R L + + LPQI I ++D DG Sbjct: 62 SLAEQASHAIQSVDVAMSNIADTRPLQAADSERSRRRLSEIVERLPQIHAIAILDADGKT 121 Query: 123 IYSSAAELPAHNNADRGYFIGHRDSTDASLHISEPLQSRLTGQPTIVLSRRVTREDGSFG 182 SS A+ +A HRD D +LHI RL GQ + LS+R++ DGSF Sbjct: 122 GTSSLADPVLPGDALASDLAYHRDRADRALHI---FALRLAGQSGVGLSKRLSHADGSFA 178 Query: 183 GVLFATIETSYFDNFYQAFKFGPHAGITLLRLDGIVLAHW-PAGKWNKEVSAAFKAKIEQ 241 GV+ A I T +F YQ+F+ G +++LR DG+VL PA + Sbjct: 179 GVVVAIINTEHFSALYQSFQLGKRGSVSILRADGVVLMQSKPALSATASRHDLAPQPLPA 238 Query: 242 DRTGYTKTTSPFDGRVKYLGFERASQYPIVVTVALPEAQVLAAWHDDLRNDLLVAIILMG 301 TG K + DG ++ G+ A +YPIVV V+ + +L W D LR+D+ VA +L+ Sbjct: 239 PFTGTRKVVA-RDGGWRHYGYAHAPRYPIVVAVSQHDDDILQGWRDGLRSDIAVAALLLC 297 Query: 302 SVILFAILLGKEFAKRTKVARMLREREARYRLLADNIADVVILLDRNGRFLFVSQSVETI 361 V+L A LL +F R + R LRERE RYRLLADNIADVV+LLDR+ +FL+VS S + + Sbjct: 298 CVVLLAALLTSQFRLRLSIERALRERETRYRLLADNIADVVMLLDRDAKFLYVSPSSQAV 357 Query: 362 LGRNPDDLIGKSCFEFVHSDHLADVARATSELTNWTTTKTVEFKTFRADGSEVWVEINFK 421 LG P +G+ CF+F+ + V RA + LT+ T T+T F+ R D ++ WVE+NFK Sbjct: 358 LGIEPRRPLGRCCFDFILPADIRSVRRAAARLTDATETRTALFRIVRGDRAQAWVEVNFK 417 Query: 422 LAGAAE-DHHAIEVVGVLRDVTERRKMEDELNALNIRLSELATTDGLTTLANRRSFDSAL 480 LA + + D H EVV VLRDVTER KMEDEL ALN RL+ELATTDGLT LANRRS D L Sbjct: 418 LAASGDPDGH--EVVAVLRDVTERHKMEDELKALNFRLAELATTDGLTELANRRSMDDFL 475 Query: 481 PREFRDREQISLIMLDIDHFKGFNDTQGHQAGDECLRRVARVIADATTNTTALAARYGGE 540 F ++Q+SL+++D+DHFK FND GHQAGD CL R+A+V+A+A LAARYGGE Sbjct: 476 RLHFAAQDQLSLLLIDVDHFKRFNDRFGHQAGDACLTRIAKVLAEAAP-APGLAARYGGE 534 Query: 541 EFAIILPGVGEQDALKVAEAMRLTVRSLAIANPAARRGVVSISLGIASRSAATASETELL 600 EFAIILPGV E A+++AEA+RLT+ +LAIA+P V++S+GIAS++ ATASE +L+ Sbjct: 535 EFAIILPGVAEPHAIRIAEAVRLTIAALAIAHPNGAATTVTVSIGIASKTKATASEEDLV 594 Query: 601 GRADLALYEAKRSGRDRTVLASSLAGDN 628 ADLA+Y AKR GR+R+V +SSL D Sbjct: 595 RAADLAMYAAKRGGRNRSVASSSLPDDE 622 >ref|NP_948954.1| diguanylate cyclase [Rhodopseudomonas palustris CGA009] emb|CAE29057.1| putative diguanylate cyclase (GGDEF) with PAS/PAC domain [Rhodopseudomonas palustris CGA009] Length = 644 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 264/611 (43%), Positives = 372/611 (60%), Gaps = 4/611 (0%) Query: 15 KLFSPTAIVAAVVPAMSIFVLGLLIWKAVEARTTALAQGERDIRNLTHSLAEHASHSVQA 74 ++ + T +VA V A+ VLGL++WK ++ ALAQ E ++RNL+HSLAEHA+H+ Q Sbjct: 14 RVSTATLVVAMFVVALGACVLGLVVWKGYDSHKIALAQSETEMRNLSHSLAEHATHTFQG 73 Query: 75 IDVAMNAMVDLLKYQKPRVDRFNAALRKTADALPQIKEIGVIDPDGNRIYSSAAELPAHN 134 DV ++ +V +K++ FN LR AD LPQ+ ++ ++D DG Y+S +PA + Sbjct: 74 ADVVLDDIVSFMKWRPHPSPVFNERLRALADNLPQLSDVAILDADGQLTYASVKPVPALD 133 Query: 135 NADRGYFIGHRDSTDASLHISEPLQSRLTGQPTIVLSRRVTREDGSFGGVLFATIETSYF 194 N+DR YF HR + D +L I+ P+QSR +G V+SRR+ DG F GV+ ATIE+ YF Sbjct: 134 NSDRSYFRYHRANDDHTLLITGPIQSRTSGVWVFVVSRRLETTDGKFFGVVVATIESEYF 193 Query: 195 DNFYQAFKFGPHAGITLLRLDGIVLAHWPAGKWNKEVS--AAFKAKIEQDRTGYTKTTSP 252 FY+ F GP I+LL DG +L WP+ + ++++ F+ + + GY T SP Sbjct: 194 STFYKTFDLGPGGSISLLHSDGRLLIQWPSLQTGRDMANMVLFQKALPRSPDGYYLTVSP 253 Query: 253 FDGRVKYLGFERASQYPIVVTVALPEAQVLAAWHDDLRNDLLVAIILMGSVILFAILLGK 312 FDG KYL + R S+YP+VVTVA E VL+ W + +R+D +VA ++ V+L A L Sbjct: 254 FDGLTKYLAYRRVSRYPLVVTVARTEDSVLSGWREAVRSDAVVATAMLACVVLLAAGLAA 313 Query: 313 EFAKRTKVARMLREREARYRLLADNIADVVILLDRNGRFLFVSQSVETILGRNPDDLIGK 372 + R +V +LRER+A YRL+ N+ DV++L D G FVS SVET+LG D L+G+ Sbjct: 314 QLRTRQEVQNLLRERDAHYRLIDTNMGDVIVLTDEVGILRFVSMSVETVLGLKADRLVGR 373 Query: 373 SCFEFVHSDHLADVARATSELTNWTTTKTVEFKTFRADGSEVWVEINFKLAGAAEDHHAI 432 VH D + V + L + VEF+ +G VW+E NF ED Sbjct: 374 LWTVLVHPDDVPFVEAVGAGLPDSPAGLCVEFRMRCPEGRLVWLEANFAYT-RNEDGPTD 432 Query: 433 EVVGVLRDVTERRKMEDELNALNIRLSELATTDGLTTLANRRSFDSALPREFRDREQISL 492 VV LRD+T R+ ME E+ ALN RL+ELA TDGLT L NRRS D + R +S+ Sbjct: 433 CVVSTLRDITRRKAMEKEVEALNARLAELARTDGLTGLPNRRSLDGFVARVITSSPTLSV 492 Query: 493 IMLDIDHFKGFNDTQGHQAGDECLRRVARVIADATTNTTALAARYGGEEFAIILPGVGEQ 552 +M+D+D FKGFND GHQ GD+ LR++ + + AARYGGEEF I+LPG Sbjct: 493 LMIDVDDFKGFNDHFGHQGGDDALRQLGHLFGGLVASVHGFAARYGGEEFTIVLPGADAV 552 Query: 553 DALKVAEAMRLTVRSLAIANPAARRGVVSISLGIASRSAATASETELLGRADLALYEAKR 612 A+ AE+++ VR+LAI NPA+ RG +++S+GIA +A S T LL AD+ALYEAKR Sbjct: 553 AAVDFAESLQAAVRTLAIRNPASARGYLTVSIGIACGTAPCDS-TVLLRDADIALYEAKR 611 Query: 613 SGRDRTVLASS 623 GRD V A++ Sbjct: 612 RGRDCCVTAAT 622