BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0121.0004.p (527 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770965.1| hypothetical protein blr4325 [Bradyrhizobium ja... 770 0.0 ref|YP_001205536.1| hypothetical protein BRADO3530 [Bradyrhizobi... 730 0.0 ref|YP_001239933.1| hypothetical protein BBta_3957 [Bradyrhizobi... 726 0.0 ref|YP_532714.1| hypothetical protein RPC_2847 [Rhodopseudomonas... 711 0.0 ref|YP_577585.1| hypothetical protein Nham_2333 [Nitrobacter ham... 697 0.0 >ref|NP_770965.1| hypothetical protein blr4325 [Bradyrhizobium japonicum USDA 110] dbj|BAC49590.1| blr4325 [Bradyrhizobium japonicum USDA 110] Length = 1279 Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/517 (74%), Positives = 437/517 (84%), Gaps = 8/517 (1%) Query: 1 MTGLDGQNLNEIGLKNGNLVVDDQQRGNKWSFENISLSLRRPSGGGVALSFGEEGAKPWS 60 MTGLDGQNLNEIGLKNGNL+VDDQQRG+KW+FENI+LSLRRPS GGVALS GEEGA+PWS Sbjct: 313 MTGLDGQNLNEIGLKNGNLIVDDQQRGSKWTFENITLSLRRPSRGGVALSLGEEGARPWS 372 Query: 61 VRVLVGPQQNGVRSVDIKADKVSTRNILLAMRTKDLTYTADLPLSGEMKGELGRDGLPTY 120 +R +GP +NGVRSVDI+ADKVST NILLA+R KDLTYTADLPL+GE+KGELGRDG+PT+ Sbjct: 373 LRATIGPAENGVRSVDIRADKVSTANILLALRVKDLTYTADLPLTGELKGELGRDGVPTF 432 Query: 121 FRGKINVGAGNIIDTDTPDYPMPVDSAEMSVEWDSGRRVLLAPIKVISGANRITLLGHLE 180 FRGKI VGAGNIIDTDTPDYPM +DSAE++VEWDS RRVL+AP K++SGANR+TLL HLE Sbjct: 433 FRGKITVGAGNIIDTDTPDYPMAIDSAEINVEWDSNRRVLVAPFKILSGANRLTLLAHLE 492 Query: 181 PPNDNVTDWQAGLSGGTIVLAGADKNEPPLIFNRINIGFRFDTDKKRVLLTQADISNGEI 240 PPN ++ DWQ G SGG+I+L G D NEPPL+FNRI IG RFDTD KR+LLTQADISNGEI Sbjct: 493 PPNGSINDWQLGFSGGSILLGGID-NEPPLVFNRIAIGLRFDTDHKRLLLTQADISNGEI 551 Query: 241 GVAGTGSIDYSGEPRLQLGFAGTPMSASALKRMWPVIIVPEVREWVLERIDRGTLQRIDV 300 GVAGTG+IDYSGEPRL LGFAGTPMSASALKRMWP ++VPE+REWV+ERI+RGTLQRI++ Sbjct: 552 GVAGTGAIDYSGEPRLTLGFAGTPMSASALKRMWPTLVVPELREWVIERIERGTLQRIEI 611 Query: 301 GVNSPVHNLSRKGPPIPDDGLSVNIVASGVTVRPVDQMPAVHDADLKARVTGRTATVTIN 360 GVNSP NL RKGPPIPDDGLSVNIVASGV VRPVD MP VHDADLKARVTGRTATV+I Sbjct: 612 GVNSPTRNLPRKGPPIPDDGLSVNIVASGVAVRPVDGMPVVHDADLKARVTGRTATVSIG 671 Query: 361 QGIADTPAGRKITLSDFSFEVPDMAPKPSPSKVRFRVDCPVPAAAEILASDRLSDLSGPP 420 QGIADTPAGRK+T+SDF FEVPDMAPKPSPS+ RFRVD PVPAAAE+LA+DRLSDLS Sbjct: 672 QGIADTPAGRKVTISDFVFEVPDMAPKPSPSRTRFRVDGPVPAAAEMLANDRLSDLSATV 731 Query: 421 IDPNASKGNVTATINLGMPVKGELTKADTLYSVTADIXRCRRQAGDEPEARSQRAEGDRQ 480 +DPN SKG +A I LG+PVKGELTKADT Y+VTAD+ A D+ +Q+ E + Sbjct: 732 VDPNTSKGTFSANIQLGLPVKGELTKADTTYAVTADLNGF---AADK-LVMNQKLEANNL 787 Query: 481 QRRLPGQGRRQDQRAGGLARLPQAGRGRCRRQAAGDA 517 + QG Q G + QA R+QA GDA Sbjct: 788 KIVASNQGY---QVKGDVKINGQAASLDYRKQAEGDA 821 >ref|YP_001205536.1| hypothetical protein BRADO3530 [Bradyrhizobium sp. ORS 278] emb|CAL77310.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 1232 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/525 (70%), Positives = 423/525 (80%), Gaps = 5/525 (0%) Query: 1 MTGLDGQNLNEIGLKNGNLVVDDQQRGNKWSFENISLSLRRPSGGGVALSFGEEGAKPWS 60 +TGLDGQNLNEIGLKNG+LVVDDQQRGNKW+FENISLSLRRPSGGGVALS GEEGAKPW Sbjct: 279 LTGLDGQNLNEIGLKNGSLVVDDQQRGNKWTFENISLSLRRPSGGGVALSLGEEGAKPWL 338 Query: 61 VRVLVGPQQNGVRSVDIKADKVSTRNILLAMRTKDLTYTADLPLSGEMKGELGRDGLPTY 120 +RVLVGP NGVRSVDIKADKVST NILLA+R KDLTY ADLPL+GE+KGELGRDGLPTY Sbjct: 339 LRVLVGPPANGVRSVDIKADKVSTSNILLALRLKDLTYMADLPLTGEIKGELGRDGLPTY 398 Query: 121 FRGKINVGAGNIIDTDTPDYPMPVDSAEMSVEWDSGRRVLLAPIKVISGANRITLLGHLE 180 RGKIN+GAGNIIDTDTPDYPM VDSAE+++EWD+ RR L+AP KVISGANRITL HLE Sbjct: 399 LRGKINIGAGNIIDTDTPDYPMAVDSAEINMEWDASRRTLVAPFKVISGANRITLNAHLE 458 Query: 181 PPNDNVTDWQAGLSGGTIVLAGADKNEPPLIFNRINIGFRFDTDKKRVLLTQADISNGEI 240 PPND V DW+ LSGGTI+L GA N+PPLIFNRI+I RFDT+ KRVLLTQA++SNGEI Sbjct: 459 PPNDGVNDWRLNLSGGTILL-GAIANDPPLIFNRISINVRFDTEGKRVLLTQAEVSNGEI 517 Query: 241 GVAGTGSIDYSGEPRLQLGFAGTPMSASALKRMWPVIIVPEVREWVLERIDRGTLQRIDV 300 GVAGTGS+DY+GEPRL+LGFA TPM A A+KR+WP +IVPEVR WV+ERIDRG +QRID+ Sbjct: 518 GVAGTGSVDYAGEPRLKLGFAATPMPALAMKRLWPALIVPEVRAWVIERIDRGNVQRIDI 577 Query: 301 GVNSPVHNLSRKGPPIPDDGLSVNIVASGVTVRPVDQMPAVHDADLKARVTGRTATVTIN 360 VNSP NL RKGPPIPDDGL VN++A+ VTVRPVD +PAV DAD+KA VTGRTATVT+ Sbjct: 578 AVNSPTRNLPRKGPPIPDDGLDVNVIATNVTVRPVDGLPAVRDADMKAHVTGRTATVTVG 637 Query: 361 QGIADTPAGRKITLSDFSFEVPDMAPKPSPSKVRFRVDCPVPAAAEILASDRLSDLSGPP 420 QG+ADTPAGRK+ SD FEVPDMAPKPSPS+VR RVD PV AAAEILASDRL+D+S P Sbjct: 638 QGVADTPAGRKLNFSDVVFEVPDMAPKPSPSRVRMRVDGPVAAAAEILASDRLNDMSAFP 697 Query: 421 IDPNASKGNVTATINLGMPVKGELTKADTLYSVTADIXRC---RRQAGDEPEARSQRAEG 477 IDP KG A +NL MPVKGELTKADT Y+VTA++ + + EA + + Sbjct: 698 IDPAQIKGTFQANVNLAMPVKGELTKADTNYTVTAELSGFAADKLVMNQKLEANTLKIVA 757 Query: 478 DRQQRRLPGQGRRQDQRAGGLARLPQAGRGRCRRQAA-GDAGRCE 521 + Q ++ G + Q A R P G R QA DA R + Sbjct: 758 NTQGLQVKGDVKINGQPATLDYRKPAEGDADIRMQATLDDASRAK 802 >ref|YP_001239933.1| hypothetical protein BBta_3957 [Bradyrhizobium sp. BTAi1] gb|ABQ36027.1| hypothetical protein BBta_3957 [Bradyrhizobium sp. BTAi1] Length = 1232 Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/457 (77%), Positives = 400/457 (87%), Gaps = 1/457 (0%) Query: 1 MTGLDGQNLNEIGLKNGNLVVDDQQRGNKWSFENISLSLRRPSGGGVALSFGEEGAKPWS 60 +TGLDGQNLNEIGLKNG L+VDDQQRGNKW+FENISLSLRRPSGGGVALS GEEGAKPW Sbjct: 279 LTGLDGQNLNEIGLKNGVLIVDDQQRGNKWTFENISLSLRRPSGGGVALSLGEEGAKPWL 338 Query: 61 VRVLVGPQQNGVRSVDIKADKVSTRNILLAMRTKDLTYTADLPLSGEMKGELGRDGLPTY 120 +RVLVGP NGVRS+DIKADKVST NILLA+R KDLTY ADLPL+GE+KGEL RDGLPTY Sbjct: 339 LRVLVGPPSNGVRSIDIKADKVSTSNILLALRLKDLTYMADLPLTGEIKGELARDGLPTY 398 Query: 121 FRGKINVGAGNIIDTDTPDYPMPVDSAEMSVEWDSGRRVLLAPIKVISGANRITLLGHLE 180 RGKIN+GAGNIIDTDTPDYPM +DSAEMS+EWD+GRRVL+AP KVISGANRITL +LE Sbjct: 399 LRGKINIGAGNIIDTDTPDYPMAIDSAEMSMEWDAGRRVLVAPFKVISGANRITLNANLE 458 Query: 181 PPNDNVTDWQAGLSGGTIVLAGADKNEPPLIFNRINIGFRFDTDKKRVLLTQADISNGEI 240 PPND V DW+ GLSGGTI+L GA +NE PLIFNRI+I FRFDT+ KRV+LTQA++SNGEI Sbjct: 459 PPNDAVNDWRLGLSGGTILL-GAIENEAPLIFNRISINFRFDTEGKRVVLTQAEVSNGEI 517 Query: 241 GVAGTGSIDYSGEPRLQLGFAGTPMSASALKRMWPVIIVPEVREWVLERIDRGTLQRIDV 300 GVAGTGS++Y+GEPRL+LGFA TPM A ALKR+WP +IVPEVR W++ERI+RG +QR+DV Sbjct: 518 GVAGTGSVEYAGEPRLKLGFAATPMPALALKRIWPALIVPEVRAWIIERIERGNVQRVDV 577 Query: 301 GVNSPVHNLSRKGPPIPDDGLSVNIVASGVTVRPVDQMPAVHDADLKARVTGRTATVTIN 360 VNSP NL RKGPPIPDDGL VNI+A+ VTV PVD +P+V DAD+KA VTGRTATVTI Sbjct: 578 AVNSPTRNLPRKGPPIPDDGLDVNILATNVTVHPVDGLPSVRDADMKAHVTGRTATVTIG 637 Query: 361 QGIADTPAGRKITLSDFSFEVPDMAPKPSPSKVRFRVDCPVPAAAEILASDRLSDLSGPP 420 QG+ADTPAGRK+ SD FEVPDMAPKPSPS++R RVD V AAAEILASDRL+DLS P Sbjct: 638 QGVADTPAGRKLNFSDVVFEVPDMAPKPSPSRLRMRVDGQVAAAAEILASDRLNDLSSVP 697 Query: 421 IDPNASKGNVTATINLGMPVKGELTKADTLYSVTADI 457 IDPN +KG A + L MPVKGELTKADT Y+VTAD+ Sbjct: 698 IDPNQTKGTFQANVTLAMPVKGELTKADTNYTVTADL 734 >ref|YP_532714.1| hypothetical protein RPC_2847 [Rhodopseudomonas palustris BisB18] gb|ABD88395.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18] Length = 1237 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/530 (66%), Positives = 425/530 (80%), Gaps = 11/530 (2%) Query: 1 MTGLDGQNLNEIGLKNGNLVVDDQQRGNKWSFENISLSLRRPSGGGVALSFGEEG----- 55 +TGLDGQNLNEIGLKNGNLVVDDQQRGN+W+FENI+LSLRRPS GGVA+S GEE Sbjct: 292 LTGLDGQNLNEIGLKNGNLVVDDQQRGNRWNFENITLSLRRPSKGGVAMSVGEEAVAGED 351 Query: 56 -AKPWSVRVLVGPQQNGVRSVDIKADKVSTRNILLAMRTKDLTYTADLPLSGEMKGELGR 114 A+ WS+RV VG NGVRSV+I+A+ V T+NILLA+R KD+TY+ADLPLSGE++GELGR Sbjct: 352 NARAWSLRVAVGAPSNGVRSVEIRANNVPTQNILLALRLKDVTYSADLPLSGELQGELGR 411 Query: 115 DGLPTYFRGKINVGAGNIIDTDTPDYPMPVDSAEMSVEWDSGRRVLLAPIKVISGANRIT 174 DGLPTYFRGKI GAG+I D+DTPDYPM +D E+++EWDSGRRVL+AP KVISGANR+T Sbjct: 412 DGLPTYFRGKITAGAGHITDSDTPDYPMAIDQGEINLEWDSGRRVLVAPFKVISGANRVT 471 Query: 175 LLGHLEPPNDNVTDWQAGLSGGTIVLAGADKNEPPLIFNRINIGFRFDTDKKRVLLTQAD 234 LL HLE PNDN+ DW+ G SGGTIVL G++ E PLIFNRI IG RFDTD +R++LTQAD Sbjct: 472 LLAHLEAPNDNIPDWRLGFSGGTIVLPGSE-GEAPLIFNRIAIGLRFDTDNRRIILTQAD 530 Query: 235 ISNGEIGVAGTGSIDYSGEPRLQLGFAGTPMSASALKRMWPVIIVPEVREWVLERIDRGT 294 ISNGEIGVAGTGSIDYSGEPRL+LGFAGTPMS SALKRMWP++IVPE+REWV+ERID+G+ Sbjct: 531 ISNGEIGVAGTGSIDYSGEPRLKLGFAGTPMSLSALKRMWPILIVPELREWVIERIDKGS 590 Query: 295 LQRIDVGVNSPVHNLSRKGPPIPDDGLSVNIVASGVTVRPVDQMPAVHDADLKARVTGRT 354 +QRID+GVNSPV NLSR+GPPIPDDGL+VNIVA+G + PVD MP++ D DLKARVTGRT Sbjct: 591 IQRIDIGVNSPVKNLSRRGPPIPDDGLAVNIVATGAMIHPVDDMPSIRDGDLKARVTGRT 650 Query: 355 ATVTINQGIADTPAGRKITLSDFSFEVPDMAPKPSPSKVRFRVDCPVPAAAEILASDRLS 414 ATVTI Q +ADTP GR++ LSD FEVPD+APKP+P++VRFR+D PV A AEIL+SDRLS Sbjct: 651 ATVTIGQSVADTPQGRRLNLSDIVFEVPDLAPKPAPARVRFRLDGPVAAVAEILSSDRLS 710 Query: 415 DLSGPPIDPNASKGNVTATINLGMPVKGELTKADTLYSVTADIXRC---RRQAGDEPEAR 471 + S PIDPN+SKG V+A + LGMP+K ELTK DT Y++TAD+ + + EA Sbjct: 711 EFSAVPIDPNSSKGTVSAQVALGMPIKRELTKVDTSYNITADLNGFSADKLVMNQKLEAA 770 Query: 472 SQRAEGDRQQRRLPGQGRRQDQRAGGLARLPQAGRGRCRRQAA-GDAGRC 520 + + + Q ++ G + Q A R P G + QA DAGR Sbjct: 771 TLKVIANNQGYQVKGDVKINGQAAALDYRKPNDGDAEIKLQATLDDAGRA 820 >ref|YP_577585.1| hypothetical protein Nham_2333 [Nitrobacter hamburgensis X14] gb|ABE63125.1| conserved hypothetical protein [Nitrobacter hamburgensis X14] Length = 1255 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/525 (65%), Positives = 417/525 (79%), Gaps = 5/525 (0%) Query: 1 MTGLDGQNLNEIGLKNGNLVVDDQQRGNKWSFENISLSLRRPSGGGVALSFGEEGAKPWS 60 +TGLDGQNLNEIGLKNG LVVDDQQRGN+WSF NISLSLRRPSGGGVALS E G+K WS Sbjct: 315 LTGLDGQNLNEIGLKNGKLVVDDQQRGNRWSFGNISLSLRRPSGGGVALSVSEGGSKAWS 374 Query: 61 VRVLVGPQQNGVRSVDIKADKVSTRNILLAMRTKDLTYTADLPLSGEMKGELGRDGLPTY 120 + V VG +GVR +D++A + +NILLA+R KDLTYTAD+PLSGE+KGE+GRDGLPTY Sbjct: 375 LHVTVGTPADGVRPIDLRAAGIPAKNILLALRIKDLTYTADMPLSGELKGEIGRDGLPTY 434 Query: 121 FRGKINVGAGNIIDTDTPDYPMPVDSAEMSVEWDSGRRVLLAPIKVISGANRITLLGHLE 180 RG + G G I D DTPDYPM +D EM++EWD+GRRVL+AP K+ISG NRITLL HLE Sbjct: 435 LRGSLFAGKGTITDADTPDYPMAIDQIEMNLEWDAGRRVLVAPFKIISGQNRITLLAHLE 494 Query: 181 PPNDNVTDWQAGLSGGTIVLAGADKNEPPLIFNRINIGFRFDTDKKRVLLTQADISNGEI 240 PPN ++ DWQ GLSGGTIVLAG+D E PLIFNRI IG RFDT+ K+V+L QADISNGEI Sbjct: 495 PPNGSIPDWQMGLSGGTIVLAGSD-GEKPLIFNRIAIGVRFDTEHKQVVLAQADISNGEI 553 Query: 241 GVAGTGSIDYSGEPRLQLGFAGTPMSASALKRMWPVIIVPEVREWVLERIDRGTLQRIDV 300 GVAGTGSIDYSGEPRL+LGFAGTPMSA++LK MWP +IVPE+REWV++R++RG+LQRI++ Sbjct: 554 GVAGTGSIDYSGEPRLKLGFAGTPMSAASLKSMWPTLIVPELREWVIDRVERGSLQRIEI 613 Query: 301 GVNSPVHNLSRKGPPIPDDGLSVNIVASGVTVRPVDQMPAVHDADLKARVTGRTATVTIN 360 GVNSP+HNLSR+GPPIPDDGLSVNIVAS VT+ PVD+MP+V DADLKA VTGRTATVTI Sbjct: 614 GVNSPIHNLSRRGPPIPDDGLSVNIVASNVTLHPVDEMPSVRDADLKALVTGRTATVTIG 673 Query: 361 QGIADTPAGRKITLSDFSFEVPDMAPKPSPSKVRFRVDCPVPAAAEILASDRLSDLSGPP 420 Q ADTPAGRK+ +SD FEVPDMAPKP+P+KV+FR+D PVPAAAEILASDRLS+ +G Sbjct: 674 QATADTPAGRKLNISDVVFEVPDMAPKPAPAKVKFRIDGPVPAAAEILASDRLSEFTGNL 733 Query: 421 IDPNASKGNVTATINLGMPVKGELTKADTLYSVTADIXRC---RRQAGDEPEARSQRAEG 477 IDPN+SKG VTA + LG+P++ ++T+ DT YS+TAD+ + EA + + Sbjct: 734 IDPNSSKGTVTAQVALGLPIRRKITQEDTTYSITADLAGFAADHLVMNQKLEANALKVVA 793 Query: 478 DRQQRRLPGQGRRQDQRAGGLARLPQAGRGRCRRQAA-GDAGRCE 521 + Q ++ G + Q A R P G + QA DA R + Sbjct: 794 NNQGYQVKGDVKINGQPASLDYRKPTVGDADIKLQATLDDASRAK 838