BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0121.0002.p (245 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001205535.1| hypothetical protein BRADO3529 [Bradyrhizobi... 275 4e-72 ref|YP_001239932.1| hypothetical protein BBta_3956 [Bradyrhizobi... 258 5e-67 ref|NP_770964.1| bacterioferritin [Bradyrhizobium japonicum USDA... 258 5e-67 ref|YP_569579.1| alkyl hydroperoxide reductase/ Thiol specific a... 249 3e-64 ref|YP_577586.1| alkyl hydroperoxide reductase/ Thiol specific a... 249 3e-64 >ref|YP_001205535.1| hypothetical protein BRADO3529 [Bradyrhizobium sp. ORS 278] emb|CAL77309.1| conserved hypothetical protein, putative peroxiredoxin domain [Bradyrhizobium sp. ORS 278] Length = 242 Score = 275 bits (704), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 147/249 (59%), Positives = 181/249 (72%), Gaps = 11/249 (4%) Query: 1 MSKKTRKKSSNTTGKRVATKVARAASASTGKSATKTRTAVAKKAAAKKTTKKTTKA--TK 58 MSK++RKKSSN A+ R+ A+ KS K + A A KKT K KA +K Sbjct: 1 MSKESRKKSSNPASYGHAS---RSGLATAAKSVAKKTSKPATAKAVKKTAVKPAKAVTSK 57 Query: 59 AETAAGVRSKA--SHKAASKPLRREPAATVTNSSAIPLAEGATAPGFNLPRDGGDSVSLK 116 A T+ G SK S AA+K +PAA + LAEGA AP F LPRDGG +VSL Sbjct: 58 ASTSKGTTSKGTTSKAAATKAKVSKPAAPAGTA----LAEGAKAPAFKLPRDGGGTVSLA 113 Query: 117 DFAGKKLVLFFYPRADTPGCTREAIDFTRLKSEFVAAGTEVVGISADTVKVQESFRNKHQ 176 D+AGKKLVLFFYP+A+TPGCT+EAIDFTRL +F AAGT V+G+SAD+VK Q+SFR+KH Sbjct: 114 DYAGKKLVLFFYPKANTPGCTKEAIDFTRLTKDFAAAGTAVLGVSADSVKAQDSFRDKHD 173 Query: 177 LSVPLVSDPAHEMLEAYGAWGEKSMYGRTFMGIIRTTVLVDSSGKVARIWRHVKVDGHAE 236 L+VPL+SD HEMLEAYGAWGEKS+YGR F+GIIR+TVL+ + G+VA++WR+VKVDGHA+ Sbjct: 174 LAVPLISDETHEMLEAYGAWGEKSLYGRKFLGIIRSTVLIGTDGRVAKVWRNVKVDGHAD 233 Query: 237 AVLEAARSL 245 AVL AAR L Sbjct: 234 AVLAAARDL 242 >ref|YP_001239932.1| hypothetical protein BBta_3956 [Bradyrhizobium sp. BTAi1] gb|ABQ36026.1| hypothetical protein BBta_3956 [Bradyrhizobium sp. BTAi1] Length = 235 Score = 258 bits (659), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 114/165 (69%), Positives = 142/165 (86%) Query: 81 EPAATVTNSSAIPLAEGATAPGFNLPRDGGDSVSLKDFAGKKLVLFFYPRADTPGCTREA 140 +PA+T+ + I LAEGA AP F LPRDGG +VSL D+AG+KLVLFFYP+A+TPGCT+EA Sbjct: 71 KPASTIPAAGGIVLAEGAKAPAFKLPRDGGGTVSLADYAGQKLVLFFYPKANTPGCTKEA 130 Query: 141 IDFTRLKSEFVAAGTEVVGISADTVKVQESFRNKHQLSVPLVSDPAHEMLEAYGAWGEKS 200 IDFTRL EF AAGT V+G+SAD+VK Q++FR+KH L+VPL+SD HEMLEAYGAWGEKS Sbjct: 131 IDFTRLTKEFAAAGTAVLGVSADSVKAQDNFRDKHDLAVPLISDETHEMLEAYGAWGEKS 190 Query: 201 MYGRTFMGIIRTTVLVDSSGKVARIWRHVKVDGHAEAVLEAARSL 245 +YGR F+GIIR+TVL+ + G+VA++WR+VKVDGHA+AVL AAR L Sbjct: 191 LYGRKFLGIIRSTVLIGADGRVAKVWRNVKVDGHADAVLTAAREL 235 >ref|NP_770964.1| bacterioferritin [Bradyrhizobium japonicum USDA 110] dbj|BAC49589.1| bll4324 [Bradyrhizobium japonicum USDA 110] Length = 228 Score = 258 bits (659), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 133/215 (61%), Positives = 161/215 (74%), Gaps = 7/215 (3%) Query: 31 KSATKTRTAVAKKAAAKKTTKKTTKATKAETAAGVRSKASHKAASKPLRREPAATVTNSS 90 K A+KTR A K+A KT + +++ + ASH AASK L +A + + Sbjct: 21 KKASKTRAATQTKSA------KTQRTPASKSTGSIAKAASHGAASKQLNSSRSAPASAAR 74 Query: 91 AIPLAEGATAPGFNLPRDGGDSVSLKDFAGKKLVLFFYPRADTPGCTREAIDFTRLKSEF 150 + LAEG AP F LPRDGG +V+L D+AG+KLVLFFYPRADTPGCTREAIDFTRL F Sbjct: 75 QV-LAEGQKAPAFRLPRDGGGAVTLSDYAGRKLVLFFYPRADTPGCTREAIDFTRLADAF 133 Query: 151 VAAGTEVVGISADTVKVQESFRNKHQLSVPLVSDPAHEMLEAYGAWGEKSMYGRTFMGII 210 AAGT V+GISAD++K QE FR+KH L +PL+SD HEMLEAYGAWGEKSMYG++F+GI+ Sbjct: 134 AAAGTAVIGISADSLKAQEKFRDKHSLGIPLISDEKHEMLEAYGAWGEKSMYGKSFLGIL 193 Query: 211 RTTVLVDSSGKVARIWRHVKVDGHAEAVLEAARSL 245 RTTVLV S GKVARIWR+V+VDGHA+ VLEAA SL Sbjct: 194 RTTVLVGSDGKVARIWRNVRVDGHADQVLEAATSL 228 >ref|YP_569579.1| alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen [Rhodopseudomonas palustris BisB5] gb|ABE39678.1| alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen [Rhodopseudomonas palustris BisB5] Length = 220 Score = 249 bits (636), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 110/152 (72%), Positives = 130/152 (85%) Query: 94 LAEGATAPGFNLPRDGGDSVSLKDFAGKKLVLFFYPRADTPGCTREAIDFTRLKSEFVAA 153 LAEGA AP F LPRDGG+SV+L F+G+KLV+FFYPRA+TPGCT+EAIDFTRLK F A Sbjct: 69 LAEGAKAPAFTLPRDGGESVTLSSFSGRKLVIFFYPRANTPGCTKEAIDFTRLKQAFEAC 128 Query: 154 GTEVVGISADTVKVQESFRNKHQLSVPLVSDPAHEMLEAYGAWGEKSMYGRTFMGIIRTT 213 GT VVG+SAD+VK Q+SFR+KH L+ PL+SDP HEMLEAYGAWGEKS+YGR F GIIR+T Sbjct: 129 GTAVVGVSADSVKAQDSFRDKHDLATPLLSDPTHEMLEAYGAWGEKSLYGRKFEGIIRST 188 Query: 214 VLVDSSGKVARIWRHVKVDGHAEAVLEAARSL 245 VL+ GKVAR+WR+VKVDGHA+ VL AA+ L Sbjct: 189 VLIGGDGKVARVWRNVKVDGHADQVLAAAQLL 220 >ref|YP_577586.1| alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen [Nitrobacter hamburgensis X14] gb|ABE63126.1| alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen [Nitrobacter hamburgensis X14] Length = 211 Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 115/177 (64%), Positives = 139/177 (78%) Query: 69 ASHKAASKPLRREPAATVTNSSAIPLAEGATAPGFNLPRDGGDSVSLKDFAGKKLVLFFY 128 +S AAS+ + A + S LAEG+ AP FNLPR+ G VSL DFAG++LV+FFY Sbjct: 35 SSSLAASEKSKSGSAKSRPESQGTDLAEGSRAPSFNLPREDGTRVSLADFAGRRLVIFFY 94 Query: 129 PRADTPGCTREAIDFTRLKSEFVAAGTEVVGISADTVKVQESFRNKHQLSVPLVSDPAHE 188 PRA TPGCTREA+DFTRL EF A GT V+G+SAD VK Q+SFR KH+LS+PL+SD H+ Sbjct: 95 PRAGTPGCTREAMDFTRLAKEFAACGTTVLGVSADPVKTQDSFRTKHKLSIPLISDEKHD 154 Query: 189 MLEAYGAWGEKSMYGRTFMGIIRTTVLVDSSGKVARIWRHVKVDGHAEAVLEAARSL 245 MLEAYGAWGEKSMYGR F+GI+R+TVLV++ G++ARIWR VKVDGHAE VL AAR L Sbjct: 155 MLEAYGAWGEKSMYGRVFLGILRSTVLVNADGRIARIWRRVKVDGHAEEVLAAARDL 211