BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0120.0113.p (487 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001206778.1| putative sugar-phosphate nucleotidyltransfer... 344 2e-92 ref|YP_001206777.1| putative deacetylase [Bradyrhizobium sp. ORS... 328 2e-87 ref|ZP_08527437.1| hypothetical protein AGRO_1416 [Agrobacterium... 299 7e-79 ref|NP_355867.2| hypothetical protein Atu4796 [Agrobacterium tum... 295 1e-77 ref|YP_004443219.1| putative deacetylase [Agrobacterium sp. H13-... 292 8e-77 >ref|YP_001206778.1| putative sugar-phosphate nucleotidyltransferase glucose-1-phosphate cytidylyltransferase [Bradyrhizobium sp. ORS 278] emb|CAL78561.1| putative sugar-phosphate nucleotidyltransferase; putative glucose-1-phosphate cytidylyltransferase (CDP-glucose pyrophosphorylase) [Bradyrhizobium sp. ORS 278] Length = 265 Score = 344 bits (883), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 156/196 (79%), Positives = 173/196 (88%) Query: 1 MKVVLFCGGLGTRIREYSESIPKPMVPIGHQPILWHVMQYYSQYDHNDFVLCLGYKANVI 60 MKVVLFCGGLGTRIREYSES+PKPM+PIGHQPILWHVMQYYSQY H DFVLCLGYKANV+ Sbjct: 1 MKVVLFCGGLGTRIREYSESVPKPMIPIGHQPILWHVMQYYSQYGHRDFVLCLGYKANVV 60 Query: 61 KDYFLNYRATANSDCVISEYGKKVELIGEHQPDWRVSLVDTGTWRNIGQRLLAVRHLVKD 120 KDYFLNY A +DC IS++GKK+EL+GE DWRVSLVDTG WRNIGQRL AVRHLV+ Sbjct: 61 KDYFLNYNQAATTDCTISQFGKKIELLGERPADWRVSLVDTGIWRNIGQRLRAVRHLVEG 120 Query: 121 EEMFFANYSDGLTDAPLPDMIQKFKESGKIGCFVAIHPPISFHLAEFDAQGSVQRIRSSQ 180 EE+F ANYSDGLTDAPLPDMI +FK SGKIGCF+AIHPPISFHLAEFD G+V R+ +S Sbjct: 121 EEIFLANYSDGLTDAPLPDMIDRFKRSGKIGCFIAIHPPISFHLAEFDDDGTVGRMAASN 180 Query: 181 ESEIWINGGYFIFRNK 196 +S IWINGGYFIFR + Sbjct: 181 DSNIWINGGYFIFRKE 196 >ref|YP_001206777.1| putative deacetylase [Bradyrhizobium sp. ORS 278] emb|CAL78560.1| conserved hypothetical protein; putative deacetylase [Bradyrhizobium sp. ORS 278] Length = 217 Score = 328 bits (840), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 153/216 (70%), Positives = 176/216 (81%) Query: 271 MRALQLARPGDQLSMLCLGAHSDDIEIGAGATLLGLIERGIKLDVHWCVLSGGAIREAEA 330 MR LQLA GD+LS+LCLGAHSDDIEIGAG TLL +++G++LDVHWCVLSG R EA Sbjct: 1 MRGLQLAGRGDRLSVLCLGAHSDDIEIGAGGTLLTWLDQGVRLDVHWCVLSGNGERGVEA 60 Query: 331 RASAADFLCEAASANVEVLSFPDGFFPERGEAIKEWFESLKRRVEPDVILTHRRDDAHQD 390 ASA DFL EA+ N+E+L+F DGFFPE+GE IK WFE LK R+ PDVIL HRRDDAHQD Sbjct: 61 TASANDFLAEASGRNLEILNFRDGFFPEQGEEIKAWFEQLKGRISPDVILAHRRDDAHQD 120 Query: 391 HRQVCRLTWNTFRDHQILEYEIPKWDGDFGQPNVYMPVSAAALDRKIELLLKHFGTQRSK 450 HRQV RL WNTFRDH +LEYEIPKWDGD G+PN YMPVS + RK+ LL+ HFG+QRSK Sbjct: 121 HRQVNRLVWNTFRDHLVLEYEIPKWDGDLGRPNFYMPVSERVMKRKVALLMSHFGSQRSK 180 Query: 451 QWFDADTFRGLARIRGMECRATERFAEAFFGRKLTL 486 QWFD +TF GLAR+RGMECRA ER+AE F RKL+L Sbjct: 181 QWFDPETFMGLARLRGMECRAPERYAEGFVARKLSL 216 >ref|ZP_08527437.1| hypothetical protein AGRO_1416 [Agrobacterium sp. ATCC 31749] gb|EGL65945.1| hypothetical protein AGRO_1416 [Agrobacterium sp. ATCC 31749] Length = 217 Score = 299 bits (766), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 137/216 (63%), Positives = 169/216 (78%) Query: 271 MRALQLARPGDQLSMLCLGAHSDDIEIGAGATLLGLIERGIKLDVHWCVLSGGAIREAEA 330 M+ + LA GD+LS+LCLGAHSDDIEIG G T+L L+ +G+ LDV+WCVLS G R EA Sbjct: 1 MKNMSLASAGDRLSILCLGAHSDDIEIGVGGTVLSLLSKGVLLDVYWCVLSAGNERALEA 60 Query: 331 RASAADFLCEAASANVEVLSFPDGFFPERGEAIKEWFESLKRRVEPDVILTHRRDDAHQD 390 R+SA FL +AAS ++E+ SF D +FP + IK W +L+ +V PD+I TH R+DAHQD Sbjct: 61 RSSAESFLAKAASYSIELASFQDSYFPSQSREIKSWLLTLRDKVSPDIIFTHSREDAHQD 120 Query: 391 HRQVCRLTWNTFRDHQILEYEIPKWDGDFGQPNVYMPVSAAALDRKIELLLKHFGTQRSK 450 HR++ RLT N FR+H ILEYEIPKWDGDFG+ N Y+P+S A++ K+ELLL+HFGTQRSK Sbjct: 121 HREINRLTSNIFRNHLILEYEIPKWDGDFGRRNAYVPLSEDAMNMKVELLLQHFGTQRSK 180 Query: 451 QWFDADTFRGLARIRGMECRATERFAEAFFGRKLTL 486 WFDADTFRGLAR+RGMECRA RFAEAF RKLT Sbjct: 181 DWFDADTFRGLARLRGMECRAPTRFAEAFTVRKLTF 216 >ref|NP_355867.2| hypothetical protein Atu4796 [Agrobacterium tumefaciens str. C58] gb|AAK88652.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58] Length = 214 Score = 295 bits (755), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 136/213 (63%), Positives = 167/213 (78%) Query: 274 LQLARPGDQLSMLCLGAHSDDIEIGAGATLLGLIERGIKLDVHWCVLSGGAIREAEARAS 333 + LA GD+LS+LCLGAHSDDIEIG G T+L L+ +G+ LDV+WCVLS G R EAR+S Sbjct: 1 MSLASAGDRLSILCLGAHSDDIEIGVGGTVLSLLSKGVLLDVYWCVLSAGNERALEARSS 60 Query: 334 AADFLCEAASANVEVLSFPDGFFPERGEAIKEWFESLKRRVEPDVILTHRRDDAHQDHRQ 393 A FL +AAS ++E+ SF D +FP + IK W +L+ +V PD+I TH R+DAHQDHR+ Sbjct: 61 AEAFLAKAASYSIELASFQDSYFPSQSREIKSWLLTLRDKVSPDIIFTHSREDAHQDHRE 120 Query: 394 VCRLTWNTFRDHQILEYEIPKWDGDFGQPNVYMPVSAAALDRKIELLLKHFGTQRSKQWF 453 + RLT N FR+H ILEYEIPKWDGDFG+ N Y+P+S A++ K+ELLL+HFGTQRSK WF Sbjct: 121 INRLTSNIFRNHLILEYEIPKWDGDFGRRNAYVPLSEDAMNMKVELLLQHFGTQRSKDWF 180 Query: 454 DADTFRGLARIRGMECRATERFAEAFFGRKLTL 486 DADTFRGLAR+RGMECRA RFAEAF RKLT Sbjct: 181 DADTFRGLARLRGMECRAPTRFAEAFTVRKLTF 213 >ref|YP_004443219.1| putative deacetylase [Agrobacterium sp. H13-3] gb|ADY66128.1| putative deacetylase [Agrobacterium sp. H13-3] Length = 214 Score = 292 bits (748), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 135/213 (63%), Positives = 166/213 (77%) Query: 274 LQLARPGDQLSMLCLGAHSDDIEIGAGATLLGLIERGIKLDVHWCVLSGGAIREAEARAS 333 + LA GD+LS+LCLGAHSDDIEIG G T+L L+ +G+ LDV+WCVLS G R EAR+S Sbjct: 1 MSLASAGDRLSILCLGAHSDDIEIGVGGTVLSLLSKGVLLDVYWCVLSAGNERALEARSS 60 Query: 334 AADFLCEAASANVEVLSFPDGFFPERGEAIKEWFESLKRRVEPDVILTHRRDDAHQDHRQ 393 A FL +AAS ++E+ SF D +FP + IK W +L+ +V PDVI TH R+DAHQDHR+ Sbjct: 61 AEAFLEKAASYSIELASFQDSYFPSQSREIKSWLLTLRDKVSPDVIFTHSREDAHQDHRE 120 Query: 394 VCRLTWNTFRDHQILEYEIPKWDGDFGQPNVYMPVSAAALDRKIELLLKHFGTQRSKQWF 453 + RLT N FR+H I+EYEIPKWDGDF + N Y+P+S A++ K+ELLL+HFGTQRSK WF Sbjct: 121 INRLTSNIFRNHLIMEYEIPKWDGDFSRRNAYVPLSEDAMNMKVELLLQHFGTQRSKDWF 180 Query: 454 DADTFRGLARIRGMECRATERFAEAFFGRKLTL 486 DADTFRGLAR+RGMECRA RFAEAF RKLT Sbjct: 181 DADTFRGLARLRGMECRAPTRFAEAFTVRKLTF 213