BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0120.0111.p         (103 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004011220.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodom...   145   2e-33
ref|YP_003060519.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hirsch...   145   2e-33
ref|ZP_04682022.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ochroba...   141   3e-32
ref|YP_001371924.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ochrob...   141   4e-32
ref|YP_001634832.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chloro...   139   9e-32

>ref|YP_004011220.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodomicrobium vannielii ATCC
           17100]
 gb|ADP70121.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Rhodomicrobium vannielii ATCC
           17100]
          Length = 183

 Score =  145 bits (366), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 63/99 (63%), Positives = 83/99 (83%)

Query: 1   VRCLNGSIWDVIVDLRANSPTFRQWRGFELSAENGSQLYIPKGFAHGFQTLSDNVQVNYL 60
           V C  G+I+DVIVDLR  +PTF +W+GFEL+AEN  +LYIP+GFAHGFQ+L+D+V+V+YL
Sbjct: 74  VTCTRGAIFDVIVDLRRAAPTFLRWQGFELTAENRRRLYIPEGFAHGFQSLTDDVEVSYL 133

Query: 61  ISEFYEPSAANGVRYDDPMFGISWPLAVSTISDKDLNWP 99
           IS FY P +A GV +DDP+ GI WPL++S+IS+KD NWP
Sbjct: 134 ISAFYAPESAGGVPHDDPLIGIEWPLSISSISEKDRNWP 172


>ref|YP_003060519.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hirschia baltica ATCC 49814]
 gb|ACT59822.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Hirschia baltica ATCC 49814]
          Length = 176

 Score =  145 bits (365), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 61/100 (61%), Positives = 76/100 (76%)

Query: 1   VRCLNGSIWDVIVDLRANSPTFRQWRGFELSAENGSQLYIPKGFAHGFQTLSDNVQVNYL 60
           VRC+ GSI D+IVDLR  S TF++W  FELS  N  +L +P+GF HGFQTL DNV+V YL
Sbjct: 74  VRCIKGSIVDIIVDLRPESSTFKKWEAFELSETNRKELLVPRGFGHGFQTLEDNVEVTYL 133

Query: 61  ISEFYEPSAANGVRYDDPMFGISWPLAVSTISDKDLNWPL 100
           +S +Y P A +GVR+DDP FGI WPL ++ +SDKD NWPL
Sbjct: 134 VSNYYTPEAESGVRHDDPAFGIEWPLPITVMSDKDRNWPL 173


>ref|ZP_04682022.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ochrobactrum intermedium LMG
           3301]
 gb|EEQ93326.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ochrobactrum intermedium LMG
           3301]
          Length = 181

 Score =  141 bits (356), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 66/100 (66%), Positives = 76/100 (76%)

Query: 1   VRCLNGSIWDVIVDLRANSPTFRQWRGFELSAENGSQLYIPKGFAHGFQTLSDNVQVNYL 60
           V CL G IWDV+VDLR +SPT+R+W G ELSAENG QLYIP+G AHGFQTL+ +V V Y+
Sbjct: 81  VTCLQGVIWDVLVDLRPHSPTYRRWTGVELSAENGVQLYIPEGCAHGFQTLTPDVLVRYM 140

Query: 61  ISEFYEPSAANGVRYDDPMFGISWPLAVSTISDKDLNWPL 100
           IS+ Y P  A G+RYDDP  GI WP   S ISDKDL WPL
Sbjct: 141 ISKPYAPDYATGLRYDDPALGIPWPNRPSVISDKDLAWPL 180


>ref|YP_001371924.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ochrobactrum anthropi ATCC
           49188]
 gb|ABS16095.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Ochrobactrum anthropi ATCC
           49188]
          Length = 174

 Score =  141 bits (355), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/100 (66%), Positives = 76/100 (76%)

Query: 1   VRCLNGSIWDVIVDLRANSPTFRQWRGFELSAENGSQLYIPKGFAHGFQTLSDNVQVNYL 60
           V CL G IWDV+VDLR +SPT+R+W G ELSAENG QLYIP+G AHGFQTL+ +V V Y+
Sbjct: 74  VTCLQGVIWDVLVDLRPHSPTYRRWAGVELSAENGVQLYIPEGCAHGFQTLTSDVLVRYM 133

Query: 61  ISEFYEPSAANGVRYDDPMFGISWPLAVSTISDKDLNWPL 100
           IS+ Y P  A G+RYDDP  GI WP   S ISDKDL WPL
Sbjct: 134 ISKPYAPDYATGLRYDDPSLGIPWPNRPSVISDKDLAWPL 173


>ref|YP_001634832.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chloroflexus aurantiacus
           J-10-fl]
 ref|YP_002569077.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chloroflexus sp. Y-400-fl]
 gb|ABY34443.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chloroflexus aurantiacus
           J-10-fl]
 gb|ACM52751.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Chloroflexus sp. Y-400-fl]
          Length = 176

 Score =  139 bits (351), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 79/100 (79%)

Query: 1   VRCLNGSIWDVIVDLRANSPTFRQWRGFELSAENGSQLYIPKGFAHGFQTLSDNVQVNYL 60
           VRC+ G+I+DVI+DLR +SPT+++W G +L+A N   LY+P+GFAHGFQTL D+ +V Y 
Sbjct: 74  VRCIRGAIYDVIIDLRPDSPTYKRWIGVKLTAANRLALYVPEGFAHGFQTLEDDTEVFYQ 133

Query: 61  ISEFYEPSAANGVRYDDPMFGISWPLAVSTISDKDLNWPL 100
           +S++Y PSA  GVRYDDP FGI WPL V+ +S+KD  WPL
Sbjct: 134 VSQYYTPSAEGGVRYDDPAFGIEWPLPVTEMSEKDKRWPL 173