BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0120.0095.p (237 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_316864.1| outer membrane protein [Nitrobacter winogradsky... 313 2e-83 ref|YP_575637.1| OmpA-like transmembrane region [Nitrobacter ham... 277 8e-73 ref|YP_534667.1| OmpA-like transmembrane region [Rhodopseudomona... 262 3e-68 ref|ZP_01044849.1| possible outer membrane protein [Nitrobacter ... 254 7e-66 ref|ZP_01045662.1| possible outer membrane protein [Nitrobacter ... 246 2e-63 >ref|YP_316864.1| outer membrane protein [Nitrobacter winogradskyi Nb-255] gb|ABA03512.1| possible outer membrane protein [Nitrobacter winogradskyi Nb-255] Length = 241 Score = 313 bits (801), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 162/221 (73%), Positives = 182/221 (82%), Gaps = 1/221 (0%) Query: 14 QNMKKILLVTASMIALGAVAPASAADLAPQPYTKAPPYVAPTPIYNWTGFYIGGHVGGAF 73 MKKILL + + + + A+ PA AADLAP+PYTKAPPYV P PIYNWTGFY+GGH+GGAF Sbjct: 16 NEMKKILLASVAFLGMAAIVPAQAADLAPRPYTKAPPYV-PAPIYNWTGFYLGGHIGGAF 74 Query: 74 GGSDNVLAPGFGGGNDGVFMGGVQAGYDYQFAPSWVMGLEANYSFLDTSSSFANRGLGSV 133 GG NVLAPGF NDG FMGG Q GYD QF+P+WV G+EANYSFLDT S FANRGLGSV Sbjct: 75 GGPGNVLAPGFFNNNDGAFMGGGQVGYDTQFSPNWVFGIEANYSFLDTGSFFANRGLGSV 134 Query: 134 TGRLGYTWGPALLYVKGGYAWADTRFSNGFGGDGGSDGYTVGAGLEYMFTQNWSGKLEYQ 193 T RLGYTWGPALLYVKGGY WAD+RF+NGF G+GG DGYTVG GLEY+FTQNWSGK+EYQ Sbjct: 135 TARLGYTWGPALLYVKGGYGWADSRFTNGFAGNGGRDGYTVGGGLEYLFTQNWSGKVEYQ 194 Query: 194 YYDFGTINVHDNVGVIGSFRNDQHTIKAGLNYRFNLGGPAV 234 YYD G +N +G IG+FRNDQHT+K GLNYRFN G PA Sbjct: 195 YYDLGNVNFFGPLGGIGNFRNDQHTVKVGLNYRFNFGAPAA 235 >ref|YP_575637.1| OmpA-like transmembrane region [Nitrobacter hamburgensis X14] gb|ABE61177.1| OmpA-like transmembrane region [Nitrobacter hamburgensis X14] Length = 245 Score = 277 bits (709), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 160/231 (69%), Positives = 177/231 (76%), Gaps = 12/231 (5%) Query: 16 MKKILLVTASMIALGAVAPASAADLAPQPYTKAPPYVAPTPIYNWTGFYIGGHVGGAFGG 75 MKKILL + +++ + A+ PA AADLA +PYTKAP Y A PIYNWTGFY+GGHVGGAFGG Sbjct: 18 MKKILLASVAIVGMAAIVPAQAADLAARPYTKAPVYEA-APIYNWTGFYLGGHVGGAFGG 76 Query: 76 SDNVLAPGFG-GGNDGVFMGGVQAGYDYQFAPSWVMGLEANYSFLDTSSS-FANRGLGSV 133 N+ APGF GNDGVFMGG Q GYDYQF+P+WV G+ ANYSFLDT+ F NRGLGSV Sbjct: 77 DHNLAAPGFTRNGNDGVFMGGGQIGYDYQFSPNWVFGIGANYSFLDTNDHPFVNRGLGSV 136 Query: 134 TGRLGYTWGPALLYVKGGYAWADTRFSNGFGGDG------GSDGYTVGAGLEYMFTQNWS 187 TGRLGYTWGPALLY KGGYAWADTR +NGFGGD G DG+TVG GLEYMFTQNWS Sbjct: 137 TGRLGYTWGPALLYAKGGYAWADTRNTNGFGGDTFSNNRIGRDGFTVGGGLEYMFTQNWS 196 Query: 188 GKLEYQYYDFGTIN-VHDNVGVIGSFRNDQHTIKAGLNYRFNLGGPAVARY 237 G +EYQYYDFGT N V FRND+HTIK GLNYRFN G P RY Sbjct: 197 GLIEYQYYDFGTTRTTFRNQDV--RFRNDEHTIKVGLNYRFNWGAPVGPRY 245 >ref|YP_534667.1| OmpA-like transmembrane region [Rhodopseudomonas palustris BisB18] gb|ABD90348.1| OmpA-like transmembrane region [Rhodopseudomonas palustris BisB18] Length = 251 Score = 262 bits (670), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 143/239 (59%), Positives = 171/239 (71%), Gaps = 22/239 (9%) Query: 14 QNMKKILLVTASMIALGAVAPASAADLAPQPYTKAPPYVAPTPIYNWTGFYIGGHVGGAF 73 MKK LL T +++A+ PA AADL + YTKAP YVA PIYNWTGFYIGGHVGGAF Sbjct: 20 HTMKKFLLGTVALVAMATTVPALAADLGARTYTKAPAYVA-APIYNWTGFYIGGHVGGAF 78 Query: 74 GGSDNVLAPGFGGGNDGVFMGGVQAGYDYQFAPSWVMGLEANYSFLDTSS--------SF 125 G D++ G +DG F+GGVQ GYDYQFAP+WV+G+EA YS+LD + SF Sbjct: 79 VGDDSI-GTGATRSSDGTFLGGVQGGYDYQFAPNWVLGVEAQYSWLDQGTDPVLVGPYSF 137 Query: 126 ANR--GLGSVTGRLGYTWGPALLYVKGGYAWADTRFSNGFGGDGG-----SDGYTVGAGL 178 +++ GLGSVTGR+GYTWGPALLY KGGYA+AD + GG G SDGYTVGAGL Sbjct: 138 SDKQKGLGSVTGRIGYTWGPALLYAKGGYAFADYDTTVTLGGVGAAVSSKSDGYTVGAGL 197 Query: 179 EYMFTQNWSGKLEYQYYDFGTINVHDNVGVIGSFRNDQHTIKAGLNYRFNLGGPAVARY 237 EY+F QNWSGK+EYQYYDFG ++ SF+ND+H +KAGLNYRFN GGP VA+Y Sbjct: 198 EYLFAQNWSGKVEYQYYDFGNVDFGGF-----SFKNDEHVVKAGLNYRFNWGGPVVAKY 251 >ref|ZP_01044849.1| possible outer membrane protein [Nitrobacter sp. Nb-311A] gb|EAQ36854.1| possible outer membrane protein [Nitrobacter sp. Nb-311A] Length = 224 Score = 254 bits (649), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 162/219 (73%), Positives = 185/219 (84%), Gaps = 3/219 (1%) Query: 16 MKKILLVTASMIALGAVAPASAADLAPQPYTKAPPYVAPTPIYNWTGFYIGGHVGGAFGG 75 MKKILL + +++ L A+APA AADLA +PYTKAPPY P PIYNWTGFY+GGH+GGAFGG Sbjct: 1 MKKILLASVAIVGLAAIAPAQAADLAARPYTKAPPYAPPAPIYNWTGFYLGGHIGGAFGG 60 Query: 76 SDNVLAPGFG-GGNDGVFMGGVQAGYDYQFAPSWVMGLEANYSFLDTSSSFANRGLGSVT 134 ++N+ APG NDGVFMGGVQ GYD QF+P+WV GLEANYSFLDT S FANRGLGSVT Sbjct: 61 ANNIFAPGVAFNNNDGVFMGGVQVGYDTQFSPNWVFGLEANYSFLDTGSFFANRGLGSVT 120 Query: 135 GRLGYTWGPALLYVKGGYAWADTRFSNGFGGDGGSDGYTVGAGLEYMFTQNWSGKLEYQY 194 GRLGYTWGPALLYVKGGY WAD+RF+NGFGG+GG DGYTVG GLEY+FTQNWSGK+EYQY Sbjct: 121 GRLGYTWGPALLYVKGGYGWADSRFTNGFGGNGGRDGYTVGGGLEYLFTQNWSGKVEYQY 180 Query: 195 YDFGTINVHDNVGVIGSFRNDQHTIKAGLNYRFNLGGPA 233 YD GT+N+ V+ +FRNDQHT+K GLNYRFN G P Sbjct: 181 YDLGTVNLV--APVVANFRNDQHTVKVGLNYRFNWGAPV 217 >ref|ZP_01045662.1| possible outer membrane protein [Nitrobacter sp. Nb-311A] gb|EAQ36430.1| possible outer membrane protein [Nitrobacter sp. Nb-311A] Length = 222 Score = 246 bits (628), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 162/219 (73%), Positives = 184/219 (84%), Gaps = 5/219 (2%) Query: 16 MKKILLVTASMIALGAVAPASAADLAPQPYTKAPPYVAPTPIYNWTGFYIGGHVGGAFGG 75 MKKILL TA+++ + + ASAADLA +PYTKAPPY P PIYNWTGFY+GGH+GGAFGG Sbjct: 1 MKKILLTTAAVLI--SASAASAADLAARPYTKAPPYAPPAPIYNWTGFYLGGHIGGAFGG 58 Query: 76 SDNVLAPGFG-GGNDGVFMGGVQAGYDYQFAPSWVMGLEANYSFLDTSSSFANRGLGSVT 134 ++N+ APG NDGVFMGGVQ GYD QF+P+WV GLEANYSFLDT S FANRGLGSVT Sbjct: 59 ANNIFAPGVAFNNNDGVFMGGVQVGYDTQFSPNWVFGLEANYSFLDTGSFFANRGLGSVT 118 Query: 135 GRLGYTWGPALLYVKGGYAWADTRFSNGFGGDGGSDGYTVGAGLEYMFTQNWSGKLEYQY 194 GRLGYTWGPALLYVKGGY WAD+RF+NGFGG+GG DGYTVG GLEY+FTQNWSGK+EYQY Sbjct: 119 GRLGYTWGPALLYVKGGYGWADSRFTNGFGGNGGRDGYTVGGGLEYLFTQNWSGKVEYQY 178 Query: 195 YDFGTINVHDNVGVIGSFRNDQHTIKAGLNYRFNLGGPA 233 YD GT+N+ V+ +FRNDQHTIK GLNYRFN G P Sbjct: 179 YDLGTVNLV--APVVANFRNDQHTIKVGLNYRFNWGAPV 215