BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0120.0091.p (309 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003594385.1| glycine/betaine ABC transporter substrate-bi... 290 2e-76 ref|ZP_08630899.1| ABC transporter permease protein [Bradyrhizob... 268 6e-70 ref|YP_001683004.1| glycine betaine ABC transporter substrate-bi... 267 1e-69 ref|YP_781123.1| glycine betaine ABC transporter substrate-bindi... 265 1e-68 ref|YP_001241903.1| putative glycine betaine/carnitine/choline A... 261 1e-67 >ref|YP_003594385.1| glycine/betaine ABC transporter substrate-binding protein [Caulobacter segnis ATCC 21756] gb|ADG11767.1| Substrate-binding region of ABC-type glycine betaine transport system [Caulobacter segnis ATCC 21756] Length = 515 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 174/273 (63%), Positives = 209/273 (76%), Gaps = 5/273 (1%) Query: 2 FDA-WRLLPTYLTPHIVLCATALALGLLVSLPLAALAADRPWLRRLVLAIASLIQTIPGL 60 FDA +LP L H+ L A+AL LGL ++LPL AA P L+ + L A L+QTIP L Sbjct: 5 FDAALAVLPERLGWHVALSASALVLGLAIALPLGIAAARSPRLKWVALGGAGLVQTIPSL 64 Query: 61 ALLALFYPLLLALSTLTARLFGFGIPALGFLPTLIALTLYAMLPILRNSVVGLNGINPAV 120 ALLALFYP+LL LS L R+FG G ALGFLP+L+ALTLY+MLPILRN+ G++GI+PAV Sbjct: 65 ALLALFYPVLLLLSGLAERVFGQGFSALGFLPSLLALTLYSMLPILRNAAAGVSGIDPAV 124 Query: 121 VEAAEGVGMTPQQILTRVKAPLATPVIMAGVRTAAVWTIGAATLSTPVGQTSLGNYIFTG 180 VEAA GVGMT +Q L RV+ PLA PVIMAGVRTAAVWTIGAATLSTPVGQTSLG+YIF+G Sbjct: 125 VEAARGVGMTDRQRLWRVELPLAAPVIMAGVRTAAVWTIGAATLSTPVGQTSLGDYIFSG 184 Query: 181 LQTENWISVLFGCIAAAGLALITDFCLGLVETGASERNRKRVVFGIAGLALGTLAGLAPL 240 LQTE+W++VL GC A+AGLA++ D LGL+E G + R+ KR + G AGLA+G LA LAPL Sbjct: 185 LQTEDWVAVLVGCAASAGLAIVVDALLGLIEAGVARRDGKRFLAGGAGLAIGLLAALAPL 244 Query: 241 LSNEAAT----YVIGAKSFSEQFILADLMGDRL 269 A YVIGAK+FSEQ+ILA+LM RL Sbjct: 245 AVGALAQGRPAYVIGAKNFSEQYILAELMAGRL 277 >ref|ZP_08630899.1| ABC transporter permease protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06431.1| ABC transporter permease protein [Bradyrhizobiaceae bacterium SG-6C] Length = 519 Score = 268 bits (686), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 160/267 (59%), Positives = 197/267 (73%) Query: 3 DAWRLLPTYLTPHIVLCATALALGLLVSLPLAALAADRPWLRRLVLAIASLIQTIPGLAL 62 DA LP YL H+ + A+ALGL VS PLA + R LR L L IAS++QT+PGLAL Sbjct: 11 DALTRLPDYLGSHVRVSLAAIALGLAVSFPLALMVRRRSVLRDLALGIASVVQTVPGLAL 70 Query: 63 LALFYPLLLALSTLTARLFGFGIPALGFLPTLIALTLYAMLPILRNSVVGLNGINPAVVE 122 LALFYPLLLAL+ L+ + FG+G A GFLP+++AL LY+MLP+LRN++ GL GI+PA++E Sbjct: 71 LALFYPLLLALAGLSLQWFGYGFSAFGFLPSVLALALYSMLPVLRNTITGLQGIDPAILE 130 Query: 123 AAEGVGMTPQQILTRVKAPLATPVIMAGVRTAAVWTIGAATLSTPVGQTSLGNYIFTGLQ 182 AAEGVGMTPQQ L V+ PLA PVIMAG+RTAAVW IG ATLSTP+GQTSLGNYIF GLQ Sbjct: 131 AAEGVGMTPQQSLMMVELPLALPVIMAGIRTAAVWVIGTATLSTPIGQTSLGNYIFAGLQ 190 Query: 183 TENWISVLFGCIAAAGLALITDFCLGLVETGASERNRKRVVFGIAGLALGTLAGLAPLLS 242 T+NW+ VLFGC AAA LALI D L L+E G R+R R+ G GL A L P ++ Sbjct: 191 TQNWVFVLFGCAAAAALALIVDQLLALIENGLRLRSRARIALGCLGLIALVAATLTPSMA 250 Query: 243 NEAATYVIGAKSFSEQFILADLMGDRL 269 YV+GAK+F+EQ+IL+ L+ RL Sbjct: 251 RTRTAYVVGAKTFTEQYILSSLIAQRL 277 >ref|YP_001683004.1| glycine betaine ABC transporter substrate-binding protein [Caulobacter sp. K31] gb|ABZ70506.1| Substrate-binding region of ABC-type glycine betaine transport system [Caulobacter sp. K31] Length = 515 Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 178/266 (66%), Positives = 209/266 (78%), Gaps = 3/266 (1%) Query: 7 LLPTYLTPHIVLCATALALGLLVSLPLAALAADRPWLRRLVLAIASLIQTIPGLALLALF 66 LLP L H++L A ALALGLL++LPL LAA P LR LA+A L+QTIP LALLALF Sbjct: 8 LLPERLAWHVLLSAAALALGLLIALPLGVLAARSPRLRWPSLALAGLVQTIPSLALLALF 67 Query: 67 YPLLLALSTLTARLFGFGIPALGFLPTLIALTLYAMLPILRNSVVGLNGINPAVVEAAEG 126 YPLLL LS L FG G ALGFLP+L+ALTLY+MLPILRN+V GL G++PAVVEAA G Sbjct: 68 YPLLLLLSNLAKTTFGHGFSALGFLPSLLALTLYSMLPILRNTVAGLTGVDPAVVEAARG 127 Query: 127 VGMTPQQILTRVKAPLATPVIMAGVRTAAVWTIGAATLSTPVGQTSLGNYIFTGLQTENW 186 VGMT +Q L RV+ PL+ PVIMAGVRTAAVWTIGAATLSTPVGQTSLG+YIF+GLQTENW Sbjct: 128 VGMTDRQRLWRVELPLSVPVIMAGVRTAAVWTIGAATLSTPVGQTSLGDYIFSGLQTENW 187 Query: 187 ISVLFGCIAAAGLALITDFCLGLVETGASERNRKRVVFGIAGLALGTLAGLAPLLSNEA- 245 VL GC+A+AGLAL+ D LGLVE GA R+R+ G+ GLA+G +APL +N A Sbjct: 188 AMVLTGCVASAGLALVVDQLLGLVERGAERRDRRIWGAGLLGLAVGLAVAVAPLAANLAP 247 Query: 246 --ATYVIGAKSFSEQFILADLMGDRL 269 ++YVIGAK+FSEQ+ILA+LM DRL Sbjct: 248 GPSSYVIGAKNFSEQYILAELMADRL 273 >ref|YP_781123.1| glycine betaine ABC transporter substrate-binding protein [Rhodopseudomonas palustris BisA53] gb|ABJ06143.1| Substrate-binding region of ABC-type glycine betaine transport system [Rhodopseudomonas palustris BisA53] Length = 516 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 151/262 (57%), Positives = 191/262 (72%) Query: 8 LPTYLTPHIVLCATALALGLLVSLPLAALAADRPWLRRLVLAIASLIQTIPGLALLALFY 67 LP YL H+ + ALALGL VSLPLA L+ D+P R +L A ++QTIPGLALLALFY Sbjct: 16 LPDYLGSHLRVSIAALALGLAVSLPLAILSRDKPVWRSALLGFAGIVQTIPGLALLALFY 75 Query: 68 PLLLALSTLTARLFGFGIPALGFLPTLIALTLYAMLPILRNSVVGLNGINPAVVEAAEGV 127 PLLLAL+ LT FG G A GFLP ++AL LY+MLP+LRN++ LNG++P + EAA GV Sbjct: 76 PLLLALAALTTSWFGIGFSAFGFLPAVLALALYSMLPVLRNTITALNGVDPVLTEAARGV 135 Query: 128 GMTPQQILTRVKAPLATPVIMAGVRTAAVWTIGAATLSTPVGQTSLGNYIFTGLQTENWI 187 GMT Q L ++ PLA PVIMAG+RTAAVW IG ATL+TP+GQTSLGNYIF GLQT+NW+ Sbjct: 136 GMTQPQSLWMIELPLAAPVIMAGIRTAAVWVIGTATLATPIGQTSLGNYIFAGLQTQNWV 195 Query: 188 SVLFGCIAAAGLALITDFCLGLVETGASERNRKRVVFGIAGLALGTLAGLAPLLSNEAAT 247 V FGC++AA LA+ D L L+E G S R+R R+ G+ G+ LA L P+ S+ Sbjct: 196 LVAFGCVSAAALAITVDQVLALIERGLSRRSRPRIALGLLGVVALVLATLTPIASSARQG 255 Query: 248 YVIGAKSFSEQFILADLMGDRL 269 YV+GAK+F+EQ++LA L+ RL Sbjct: 256 YVVGAKTFAEQYLLAALIAQRL 277 >ref|YP_001241903.1| putative glycine betaine/carnitine/choline ABC transporter permease/substrate binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ37997.1| putative glycine betaine/carnitine/choline ABC transporter (permease and substrate binding protein) [Bradyrhizobium sp. BTAi1] Length = 515 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 158/262 (60%), Positives = 196/262 (74%) Query: 8 LPTYLTPHIVLCATALALGLLVSLPLAALAADRPWLRRLVLAIASLIQTIPGLALLALFY 67 L YL H+ + ALALGL VS PLA LA +RP LR L+L IAS++QT+PGLALLALFY Sbjct: 13 LADYLGSHLRVSIAALALGLAVSFPLALLARNRPTLRNLLLGIASVVQTVPGLALLALFY 72 Query: 68 PLLLALSTLTARLFGFGIPALGFLPTLIALTLYAMLPILRNSVVGLNGINPAVVEAAEGV 127 PLLLAL+ LT R FG A GFLP ++AL LY+MLP+LRN++ GLNG++P ++EAA+GV Sbjct: 73 PLLLALAALTLRWFGLSFSAFGFLPAVLALALYSMLPVLRNTITGLNGVDPGLIEAAKGV 132 Query: 128 GMTPQQILTRVKAPLATPVIMAGVRTAAVWTIGAATLSTPVGQTSLGNYIFTGLQTENWI 187 GMT +Q L V+ PLA PVIMAG+RTAAVW IG ATLSTP+GQTSLGNYIF GLQT+NW+ Sbjct: 133 GMTERQALLMVELPLALPVIMAGIRTAAVWVIGTATLSTPIGQTSLGNYIFAGLQTQNWV 192 Query: 188 SVLFGCIAAAGLALITDFCLGLVETGASERNRKRVVFGIAGLALGTLAGLAPLLSNEAAT 247 V+FGC+AAA LAL D L +E G R+R RV G A +AL A L P L + A Sbjct: 193 LVMFGCVAAAVLALAVDQLLAFIELGLRTRSRARVGSGTAAIALMVGASLLPSLGSSPAR 252 Query: 248 YVIGAKSFSEQFILADLMGDRL 269 Y IGAK+F+EQ++L+ L+ +RL Sbjct: 253 YAIGAKTFTEQYVLSALISERL 274