BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0120.0086.p (380 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002490204.1| acyl-CoA dehydrogenase domain protein [Methy... 570 e-160 ref|YP_003609166.1| acyl-CoA dehydrogenase domain protein [Burkh... 286 5e-75 ref|YP_293583.1| butyryl-CoA dehydrogenase [Ralstonia eutropha J... 280 3e-73 ref|YP_003769239.1| acyl-CoA dehydrogenase [Amycolatopsis medite... 279 5e-73 ref|YP_001172433.1| acyl-CoA dehydrogenase [Pseudomonas stutzeri... 278 9e-73 >ref|YP_002490204.1| acyl-CoA dehydrogenase domain protein [Methylobacterium nodulans ORS 2060] gb|ACL63037.1| acyl-CoA dehydrogenase domain protein [Methylobacterium nodulans ORS 2060] Length = 383 Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust. Identities = 276/378 (73%), Positives = 323/378 (85%) Query: 1 MLLDLNEDEALVKGSLEQFTAGALRPRIKPFADRHEFPIELVKEFLALGFMGTAYDPAFG 60 M DL +DE+ +K ++E F G L+ RI PF ++HEFP +LV+ F LGFMGTAYDP + Sbjct: 1 MFNDLTDDESALKRAVEAFAQGQLKARIAPFVEQHEFPSDLVRAFAGLGFMGTAYDPDYE 60 Query: 61 GGGLGTRGAAIVAETLARAEPGFAAIFLCNSAPMTVIARYGSDDLKRKWLEPLCRGDFIA 120 GGGLGTRGAAIVAETLA EPGFAAI+LCNSAPM+VIAR+GSD LKR+WL PLCRGD IA Sbjct: 61 GGGLGTRGAAIVAETLAEVEPGFAAIYLCNSAPMSVIARFGSDALKREWLAPLCRGDCIA 120 Query: 121 SFGVTEPSGGSDVASVKMRAVEDGDSFVLSGSKVFSTNAGTPLHGITTFVAVTDPDLGAK 180 SFGV+EP GGSDVAS + RAV DGD ++L+GSKVFSTNAGT LHG++ VAVTDPD GAK Sbjct: 121 SFGVSEPHGGSDVASTRTRAVRDGDDWILTGSKVFSTNAGTDLHGLSAVVAVTDPDKGAK 180 Query: 181 GLSTFVVPVGTPGFRVGKASRKIGWRVADSVELFLDDCRVPKANMVGNRGDGLRQILTTL 240 GLSTFVVPVGTPGFRVGKA RK+GWR+A SVELF D+CR+P MVG +G+GLRQILTTL Sbjct: 181 GLSTFVVPVGTPGFRVGKAGRKVGWRIAPSVELFFDECRIPGRLMVGAQGEGLRQILTTL 240 Query: 241 SIGRILVAATGLGLARKAIDLAKVYGSGRQVGGTPIFQHQGLTFPLADALTKIHAAELMI 300 S+GRILVAA LGL+RKA+ LA YG R+VGG PIF++QGLTFPLADA+T+IHAAELM+ Sbjct: 241 SLGRILVAAAALGLSRKALGLAARYGRDRRVGGRPIFENQGLTFPLADAMTQIHAAELMV 300 Query: 301 RNAACLADADRPFRLETSMAKLFATEMAGEAADIALQVHGGYGAFEEFDVSSLPGEARVL 360 RNAACLADA RPFRLETSM KLFA+EMAGE D+A+QVHGGYG FE+++VS L GEA+VL Sbjct: 301 RNAACLADAGRPFRLETSMTKLFASEMAGEIVDLAVQVHGGYGIFEDYEVSGLMGEAKVL 360 Query: 361 RILEGTSEIQRLVIAREF 378 +I+EGTSE+QRLVIARE Sbjct: 361 QIVEGTSEVQRLVIAREL 378 >ref|YP_003609166.1| acyl-CoA dehydrogenase domain protein [Burkholderia sp. CCGE1002] gb|ADG19655.1| acyl-CoA dehydrogenase domain protein [Burkholderia sp. CCGE1002] Length = 381 Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 159/378 (42%), Positives = 226/378 (59%), Gaps = 3/378 (0%) Query: 5 LNEDEALVKGSLEQFTAGALRPRIKPFADRHEFPIELVKEFLALGFMGTAYDPAFGGGGL 64 LNE ++ ++ +F + P + + FP ++ K LGF G Y ++GGGG Sbjct: 5 LNEQHTAIRDAVRRFAENEIAPVSEELWEAEAFPYDIWKRAGELGFAGLPYPESWGGGGG 64 Query: 65 GTRGAAIVAETLARAEPGFAAIFLCNSAPMTVIARYGSDDLKRKWLEPLCRGDFIASFGV 124 IV E LAR + A + NS ++++ YG+D+ K ++L P+ G + + G+ Sbjct: 65 EWLSYVIVLEELARVDCAIANSLMANSTVASLLSNYGTDEQKDRYLRPILDGRKVGAIGL 124 Query: 125 TEPSGGSDVASVKMRAVEDGDSFVLSGSKVFSTNAGTPLHGITTFVAVT--DPDLGAKGL 182 +EP+ GSD A++ RA +GD +++ GSK F +N+GT + G AVT PD G K + Sbjct: 125 SEPNAGSDAANIATRATLEGDRWIIDGSKTFISNSGTEVTGPVVIAAVTGTRPD-GRKEI 183 Query: 183 STFVVPVGTPGFRVGKASRKIGWRVADSVELFLDDCRVPKANMVGNRGDGLRQILTTLSI 242 S F+VP GTPGF G+ RKIGWR + + ELF + C +P AN++G RG GLRQ L +S Sbjct: 184 SNFIVPNGTPGFSYGRKLRKIGWRASSTYELFFERCAIPAANLLGERGAGLRQTLAQIST 243 Query: 243 GRILVAATGLGLARKAIDLAKVYGSGRQVGGTPIFQHQGLTFPLADALTKIHAAELMIRN 302 GRIL+ A LG+ + ++D + Y R+ G PI + Q L F +AD HAA LM+ + Sbjct: 244 GRILIGALALGILQGSLDRSIAYMKERRAFGKPIAEFQALQFKIADMAAHAHAARLMLYD 303 Query: 303 AACLADADRPFRLETSMAKLFATEMAGEAADIALQVHGGYGAFEEFDVSSLPGEARVLRI 362 A L DA F + SMAKLFATE A EAA ALQ+HGGYG E+ VS G+A+VL I Sbjct: 304 TAALKDAGVRFDQQASMAKLFATECAMEAAHQALQIHGGYGVMSEYPVSRAFGDAKVLEI 363 Query: 363 LEGTSEIQRLVIAREFTA 380 +EGTSEIQR++I+R A Sbjct: 364 VEGTSEIQRMIISRNLLA 381 >ref|YP_293583.1| butyryl-CoA dehydrogenase [Ralstonia eutropha JMP134] gb|AAZ65726.1| butyryl-CoA dehydrogenase [Ralstonia eutropha JMP134] Length = 380 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 151/373 (40%), Positives = 221/373 (59%), Gaps = 3/373 (0%) Query: 7 EDEALVKGSLEQFTAGALRPRIKPFADRHEFPIELVKEFLALGFMGTAYDPAFGGGGLGT 66 E +++ ++ +F + P + FP E+ + LG++G Y A+GG G Sbjct: 6 EHHEMIREAVRRFAEEEIAPVAHRLWEEESFPYEIWRRAGELGYIGLPYPEAWGGSGGDW 65 Query: 67 RGAAIVAETLARAEPGFAAIFLCNSAPMTVIARYGSDDLKRKWLEPLCRGDFIASFGVTE 126 G AI E +AR + A + NS +++ YG+D K ++L P+ G + G+TE Sbjct: 66 LGFAIALEEIARVDCAVAVAIMANSTAASLLNNYGTDSQKARFLRPILTGTQVGCIGLTE 125 Query: 127 PSGGSDVASVKMRAVEDGDSFVLSGSKVFSTNAGTPLHGITTFVAVT--DPDLGAKGLST 184 P+ GSD A+++ RAV +V++G+K F +N+G+ + G AVT PD G K +S Sbjct: 126 PNAGSDAANIQTRAVLKDGCWVINGAKTFISNSGSEITGPIVIAAVTGTRPD-GRKEISN 184 Query: 185 FVVPVGTPGFRVGKASRKIGWRVADSVELFLDDCRVPKANMVGNRGDGLRQILTTLSIGR 244 F+VP GTPGF GK KIGWR + + ELF +DC +P +++G G GLRQ L+ +S GR Sbjct: 185 FIVPNGTPGFSHGKKLHKIGWRGSTTFELFFEDCAIPADHLLGEVGVGLRQTLSQVSTGR 244 Query: 245 ILVAATGLGLARKAIDLAKVYGSGRQVGGTPIFQHQGLTFPLADALTKIHAAELMIRNAA 304 IL+ GLG+ + +++ + Y S R G + Q Q L F LAD T HAA LM+ +AA Sbjct: 245 ILIGTLGLGILQGSLERSVRYMSERTAFGKTLNQFQSLQFKLADMATHAHAARLMLYDAA 304 Query: 305 CLADADRPFRLETSMAKLFATEMAGEAADIALQVHGGYGAFEEFDVSSLPGEARVLRILE 364 D RP+ + SMAKLFATE A EAA A+Q+HGG G E+ VS G+A+VL I+E Sbjct: 305 VAKDEGRPYDRQASMAKLFATEKAMEAAHQAVQIHGGNGIMTEYAVSRAFGDAKVLEIVE 364 Query: 365 GTSEIQRLVIARE 377 GTSEIQR++I+R+ Sbjct: 365 GTSEIQRMIISRD 377 >ref|YP_003769239.1| acyl-CoA dehydrogenase [Amycolatopsis mediterranei U32] gb|ADJ48837.1| acyl-CoA dehydrogenase [Amycolatopsis mediterranei U32] gb|AEK45783.1| acyl-CoA dehydrogenase [Amycolatopsis mediterranei S699] Length = 382 Score = 279 bits (714), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 152/380 (40%), Positives = 221/380 (58%), Gaps = 4/380 (1%) Query: 1 MLLDLNEDEALVKGSLEQFTAGALRPRIKPFADRHEFPIELVKEFLALGFMGTAYDPAFG 60 M DL ED V+ + F A + P +++R FP ++ + LG MG D A+G Sbjct: 1 MDFDLPEDAVAVQRLVRDFAAKEIEPYAADWSERAHFPAKVFRTLGELGLMGMLVDEAYG 60 Query: 61 GGGLGTRGAAIVAETLARAEPGFAAIFLCNSAPMTV-IARYGSDDLKRKWLEPLCRGDFI 119 G G E L A+ A+ + +S ++ +A +G+++ K++WL PL G I Sbjct: 61 GANAGFVSYVAAMEALGAADQSVASAWNAHSTIASLPLATFGTEEQKQRWLVPLATGQNI 120 Query: 120 ASFGVTEPSGGSDVASVKMRAVEDGDSFVLSGSKVFSTNAGTPLH-GITTFVAVTDPDLG 178 +FG+TEP+ GSD AS++ RA DGD +VL+G+K+F +NAGT + G+T D D Sbjct: 121 GAFGLTEPTAGSDAASIRTRARRDGDGWVLNGTKMFISNAGTEMSLGVTVLAVTGDGD-- 178 Query: 179 AKGLSTFVVPVGTPGFRVGKASRKIGWRVADSVELFLDDCRVPKANMVGNRGDGLRQILT 238 + TF +P GTPG+ G+ RK+GW D+ EL D R+P +++G G+GLRQ L Sbjct: 179 KRRFGTFFIPDGTPGYEKGQPLRKLGWHAMDTRELVFTDVRLPGDHLIGEEGNGLRQFLE 238 Query: 239 TLSIGRILVAATGLGLARKAIDLAKVYGSGRQVGGTPIFQHQGLTFPLADALTKIHAAEL 298 L GRI VAA GL LA+ ++DLA + + RQ G P+ Q + LAD T+I AA Sbjct: 239 VLDAGRISVAALGLSLAQASLDLALRHATDRQQFGRPLSGFQAVAHKLADMATEIEAARA 298 Query: 299 MIRNAACLADADRPFRLETSMAKLFATEMAGEAADIALQVHGGYGAFEEFDVSSLPGEAR 358 ++ AA L D RPF E +MAKL+A+E+A AA ++Q+HGGYG E +S +A+ Sbjct: 299 LVYRAAWLGDQGRPFSQEAAMAKLYASEVANRAASASVQIHGGYGYMRESAISRFYADAK 358 Query: 359 VLRILEGTSEIQRLVIAREF 378 +L I EGTSE+QR VIA+ Sbjct: 359 ILEIGEGTSEVQRNVIAKRL 378 >ref|YP_001172433.1| acyl-CoA dehydrogenase [Pseudomonas stutzeri A1501] gb|ABP79591.1| acyl-CoA dehydrogenase [Pseudomonas stutzeri A1501] Length = 379 Score = 278 bits (712), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 155/378 (41%), Positives = 217/378 (57%), Gaps = 11/378 (2%) Query: 6 NEDEALVKGSLEQFTAGALRPRIKPFADR----HEFPIELVKEFLALGFMGTAYDPAFGG 61 NED+ + QF R R+KPFA++ H +P E + E ALGF G +GG Sbjct: 4 NEDQCAIAEMARQFA----RERLKPFAEQWSREHRYPAEAIGEMAALGFFGMLVPEQWGG 59 Query: 62 GGLGTRGAAIVAETLARAEPGFAAIF-LCNSAPMTVIARYGSDDLKRKWLEPLCRGDFIA 120 G A+ E +A + + I + NS I R+G+D KR +L PL RG+ I Sbjct: 60 SDTGYLAYAMALEEIAAGDGACSTIMSVHNSVGCVPILRFGNDQQKRDFLGPLARGEQIG 119 Query: 121 SFGVTEPSGGSDVASVKMRAVEDGDSFVLSGSKVFSTNAGTPLHGITTFVAVTDPDLGAK 180 +F +TEP GSD +S++ RA DGD +VL+G+K F T+ G AVTDPD G + Sbjct: 120 AFALTEPQAGSDASSLRTRARRDGDHYVLNGAKQFITSGKHA--GTVIVFAVTDPDAGKR 177 Query: 181 GLSTFVVPVGTPGFRVGKASRKIGWRVADSVELFLDDCRVPKANMVGNRGDGLRQILTTL 240 G+S F+VP +PG++V + K+G +D+ ++ +D RVP AN +G G+G R L L Sbjct: 178 GISAFIVPTDSPGYQVVRVEDKLGQHASDTCQIAFEDLRVPVANRLGEEGEGYRIALANL 237 Query: 241 SIGRILVAATGLGLARKAIDLAKVYGSGRQVGGTPIFQHQGLTFPLADALTKIHAAELMI 300 GRI +AA +G+AR A + A+ Y R+ G PI +HQ + F LAD T+I A M+ Sbjct: 238 EGGRIGIAAQAVGMARAAFEAARDYAGERETFGKPIIEHQAVAFRLADMATQIAVARQMV 297 Query: 301 RNAACLADADRPFRLETSMAKLFATEMAGEAADIALQVHGGYGAFEEFDVSSLPGEARVL 360 +AA L +A RP +E SMAKLFA+EMA A+Q GGYG +F V + + RV Sbjct: 298 HHAAALREAGRPALVEASMAKLFASEMAERVCSAAIQTLGGYGYLSDFPVERIYRDVRVC 357 Query: 361 RILEGTSEIQRLVIAREF 378 +I EGTS+IQRLVI+R Sbjct: 358 QIYEGTSDIQRLVISRNL 375