BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0120.0080.p (392 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004330626.1| extracellular ligand-binding receptor [Pseud... 128 2e-27 ref|YP_001777671.1| extracellular ligand-binding receptor [Burkh... 116 5e-24 ref|ZP_04942445.1| Extracellular ligand-binding receptor [Burkho... 116 5e-24 ref|YP_837124.1| extracellular ligand-binding receptor [Burkhold... 116 7e-24 ref|YP_003776328.1| amino acid ABC transporter periplasmic prote... 112 1e-22 >ref|YP_004330626.1| extracellular ligand-binding receptor [Pseudonocardia dioxanivorans CB1190] gb|AEA22773.1| Extracellular ligand-binding receptor [Pseudonocardia dioxanivorans CB1190] Length = 393 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 104/351 (29%), Positives = 175/351 (49%), Gaps = 30/351 (8%) Query: 28 VVKIGQIEALTGATATYGWMSAQGTKVAVEEINAKGGFKVGDRTYKLELQQVDTRGEPRE 87 VVK+G + + TGA A +G +AV++INA+G F V + EL+ D P Sbjct: 36 VVKLGSVFSTTGAAAAFGIDGQNSIDMAVKDINARG-FTVAGKKCTFELKSADMASNPDN 94 Query: 88 ATVQFRKMMEE-KVHFVFGPFLTNVFNAIEPI--ANQNNGKFLLFAGATSAHAALGKPDH 144 + ++ H++ G ++ AI P+ A + G + + TS + KPD Sbjct: 95 MARNAQDLITGFGAHYLIG---GDMSPAIPPMVTAAERTGNVMALSVTTSMQNYV-KPDK 150 Query: 145 DYLLRTWNWDAG-SAGFGKLMVDYLKKLNTRKVAMLFQNDAFGKTAVDIYSALLKDAGIE 203 + + + D + G+ + L + +++AML ND G+T D Y G+E Sbjct: 151 PFFKLSASDDKMVNNGYIPAVTKALPDI--KRIAMLMNNDDTGRTLADSYVPAFAQNGVE 208 Query: 204 L-QVELFEPGTKDFSAVLAKLAAGKPDILFPGYS-DAVLYDIVRQSTESGFGNRFFLVRG 261 + Q F+P + DF+AV+ ++ G D LF GY+ D I+ + ++G + F+ RG Sbjct: 209 VTQKIFFDPASTDFAAVVNQIPRGSVDGLFIGYNGDGRAAAIMDAALDAGL-TKNFITRG 267 Query: 262 -SIGPALKNKDAIEDYIAYVPKYFEGAEKTEPKVRAFIESYQKLFKRE------FPYDQA 314 S P + D I++Y A++ + A + KV+AFI+ Y +K + FP+ Sbjct: 268 ISALPGQQRADKIDNY-AWLVLGADPAFPSTDKVKAFIDRYAAEYKVDPAKVTWFPFTH- 325 Query: 315 PLCSSSCYDHVYMLVEAMQKAGTVDDVAKIRAALMSMTYEGMWRIKYDKTG 365 YD++ ML +AM+KAGT DDV K+ AAL +Y+G+ ++ +D TG Sbjct: 326 -------YDYIAMLAQAMEKAGTTDDVDKVAAALRGASYDGVVQVSFDPTG 369 >ref|YP_001777671.1| extracellular ligand-binding receptor [Burkholderia cenocepacia MC0-3] gb|ACA93181.1| Extracellular ligand-binding receptor [Burkholderia cenocepacia MC0-3] Length = 386 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 111/360 (30%), Positives = 165/360 (45%), Gaps = 25/360 (6%) Query: 28 VVKIGQIEALTGATATYGWMSAQGTKVAVEEINAKGGFKVGDRTYKLELQQVDTRGEPRE 87 VVKIG +E LTG A G + G ++AVEEINAK G +G + L+L D +PR Sbjct: 35 VVKIGSVEPLTGGIAHLGKDNENGARLAVEEINAK-GLTIGGHSVTLQLDAQDDAADPRT 93 Query: 88 ATVQFRKMMEEKVHFVFGPFLTNVFNAIEPIANQNNGKFLLFAGATSAHAALGKP--DHD 145 AT +K++++KV V G N +I K AG T + P Sbjct: 94 ATQVAQKLVDDKVVAVVGHL--NSGTSIPA------SKIYSEAGITQISPSSTNPVYTQQ 145 Query: 146 YLLRTWNWDAGSAGFGKLMVDYLKKL-NTRKVAMLFQNDAFGKTAVDIYSALLKDAGIE- 203 T+ A A G + +Y KKL N +VA++ + A+G+ + + K+ GI Sbjct: 146 GFKTTFRVVATDAQQGPALANYAKKLGNIHRVAIVDDSTAYGQGLANEFEKRAKELGITV 205 Query: 204 LQVELFEPGTKDFSAVLAKLAAGKPDILFPGYSDAVLYDIVRQSTESGFGNRFFLVRGSI 263 L + DF +VL K+ PD + G SD+ +Q+ + G R F G Sbjct: 206 LSHDATSDKAIDFRSVLTKIKGETPDAIMYGGSDSTGGPFAKQAKQLGLRARVFTGDGVC 265 Query: 264 GPALKN--KDAIEDYIAYVPKYFEGAEKTEPKVRAFIESYQKLFKREFPYDQAPLCSSSC 321 +L N DA E+ + A +T P AF Y+K F + YD AP Sbjct: 266 TESLANLAGDATENVVC---SQAGAAIQTMPGGEAFQAKYKKRFGQVVEYD-APF----A 317 Query: 322 YDHVYMLVEAMQKAGTVDDVAKIRAALMSMTYEG-MWRIKYDKTGEAVFGFDVVHVRKGG 380 YD VY++V+AM++A + D AKI A + Y G + ++D G+ G ++V K G Sbjct: 318 YDAVYIIVDAMKRAKSTDP-AKILAQMPPTDYHGVIGETQFDSHGDLAHGVISLYVYKAG 376 >ref|ZP_04942445.1| Extracellular ligand-binding receptor [Burkholderia cenocepacia PC184] gb|EAY65616.1| Extracellular ligand-binding receptor [Burkholderia cenocepacia PC184] Length = 386 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 111/360 (30%), Positives = 165/360 (45%), Gaps = 25/360 (6%) Query: 28 VVKIGQIEALTGATATYGWMSAQGTKVAVEEINAKGGFKVGDRTYKLELQQVDTRGEPRE 87 VVKIG +E LTG A G + G ++AVEEINAK G +G + L+L D +PR Sbjct: 35 VVKIGSVEPLTGGIAHLGKDNENGARLAVEEINAK-GLTIGGHSVTLQLDAQDDAADPRT 93 Query: 88 ATVQFRKMMEEKVHFVFGPFLTNVFNAIEPIANQNNGKFLLFAGATSAHAALGKP--DHD 145 AT +K++++KV V G N +I K AG T + P Sbjct: 94 ATQVAQKLVDDKVVAVVGHL--NSGTSIPA------SKIYSEAGITQISPSSTNPVYTQQ 145 Query: 146 YLLRTWNWDAGSAGFGKLMVDYLKKL-NTRKVAMLFQNDAFGKTAVDIYSALLKDAGIE- 203 T+ A A G + +Y KKL N +VA++ + A+G+ + + K+ GI Sbjct: 146 GFKTTFRVVATDAQQGPALANYAKKLGNIHRVAIVDDSTAYGQGLANEFEKRAKELGITV 205 Query: 204 LQVELFEPGTKDFSAVLAKLAAGKPDILFPGYSDAVLYDIVRQSTESGFGNRFFLVRGSI 263 L + DF +VL K+ PD + G SD+ +Q+ + G R F G Sbjct: 206 LSHDATSDKAIDFRSVLTKIKGETPDAIMYGGSDSTGGPFAKQAKQLGLRARVFTGDGVC 265 Query: 264 GPALKN--KDAIEDYIAYVPKYFEGAEKTEPKVRAFIESYQKLFKREFPYDQAPLCSSSC 321 +L N DA E+ + A +T P AF Y+K F + YD AP Sbjct: 266 TESLANLAGDATENVVC---SQAGAAIQTMPGGEAFQAKYKKRFGQVVEYD-APF----A 317 Query: 322 YDHVYMLVEAMQKAGTVDDVAKIRAALMSMTYEG-MWRIKYDKTGEAVFGFDVVHVRKGG 380 YD VY++V+AM++A + D AKI A + Y G + ++D G+ G ++V K G Sbjct: 318 YDAVYIIVDAMKRAKSTDP-AKILAQMPPTDYHGVIGETQFDSHGDLAHGVISLYVYKAG 376 >ref|YP_837124.1| extracellular ligand-binding receptor [Burkholderia cenocepacia HI2424] gb|ABK10231.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Burkholderia cenocepacia HI2424] Length = 386 Score = 116 bits (290), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 111/360 (30%), Positives = 165/360 (45%), Gaps = 25/360 (6%) Query: 28 VVKIGQIEALTGATATYGWMSAQGTKVAVEEINAKGGFKVGDRTYKLELQQVDTRGEPRE 87 VVKIG +E LTG A G + G ++AVEEINAK G +G + L+L D +PR Sbjct: 35 VVKIGSVEPLTGGIAHLGKDNENGARLAVEEINAK-GLTIGGHSVTLQLDAQDDAADPRT 93 Query: 88 ATVQFRKMMEEKVHFVFGPFLTNVFNAIEPIANQNNGKFLLFAGATSAHAALGKP--DHD 145 AT +K++++KV V G N +I K AG T + P Sbjct: 94 ATQVAQKLVDDKVVAVVGHL--NSGTSIPA------SKIYSEAGITQISPSSTNPVYTQQ 145 Query: 146 YLLRTWNWDAGSAGFGKLMVDYLKKL-NTRKVAMLFQNDAFGKTAVDIYSALLKDAGIE- 203 T+ A A G + +Y KKL N +VA++ + A+G+ + + K+ GI Sbjct: 146 GFKTTFRVVATDAQQGPALANYAKKLGNIHRVAIVDDSTAYGQGLANEFEKRAKELGITV 205 Query: 204 LQVELFEPGTKDFSAVLAKLAAGKPDILFPGYSDAVLYDIVRQSTESGFGNRFFLVRGSI 263 L + DF +VL K+ PD + G SD+ +Q+ + G R F G Sbjct: 206 LSHDATSDKAIDFRSVLTKIKGETPDAIMYGGSDSTGGPFAKQAKQLGLRARVFTGDGVC 265 Query: 264 GPALKN--KDAIEDYIAYVPKYFEGAEKTEPKVRAFIESYQKLFKREFPYDQAPLCSSSC 321 +L N DA E+ + A +T P AF Y+K F + YD AP Sbjct: 266 TESLANLAGDATENVVC---SQAGAAIQTMPGGEAFQAKYKKRFGQVVEYD-APF----A 317 Query: 322 YDHVYMLVEAMQKAGTVDDVAKIRAALMSMTYEG-MWRIKYDKTGEAVFGFDVVHVRKGG 380 YD VY++V+AM++A + D AKI A + Y G + ++D G+ G ++V K G Sbjct: 318 YDAVYIIVDAMKRAKSTDP-AKILAQMPPTDYHGVVGETQFDSHGDLAHGVISLYVYKAG 376 >ref|YP_003776328.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] emb|CAP19672.1| periplasmic component protein [Herbaspirillum seropedicae] gb|ADJ64420.1| ABC-type amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 385 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 122/386 (31%), Positives = 184/386 (47%), Gaps = 43/386 (11%) Query: 16 GLLFGSAAKAEDVVKIGQIEALTGATATYGWMSAQGTKVAVEEINAKGGFKVGDRTYKLE 75 G AA A D+ K+G EALTG A YG G +A EEINAKGG GD KL Sbjct: 16 GATLSQAALAADI-KLGVAEALTGPAAKYGVAIKNGFTLASEEINAKGGVN-GD---KLA 70 Query: 76 LQQVDTRGEPREATVQFRKMM-EEKVHFVFGPFLTNVFNAIEPIANQNNGKFLLFAGATS 134 L D +G+ EA F+K++ ++KV VFGP L+N A +PIAN K ++F + + Sbjct: 71 LVIEDEQGKKEEAINVFKKLIFQDKVLAVFGPTLSNSAFAADPIANA--AKVVVFGTSNT 128 Query: 135 AH--AALGKPDHDYLLRTWNWDAGSAGFGKLMVDYLKKLNTRKVAMLFQN-DAFGKTAVD 191 A A+G + R +A + +K +KVA+++ N DAF K+ D Sbjct: 129 ADGITAMGP----FTFRNSVMEADV--LPVTVKAAVKHFGIKKVAVIYGNDDAFTKSGYD 182 Query: 192 IYSALLKDAGIEL-QVELFEPGTKDFSAVLAKLAAGKPDILFPGYSDAVLYDIVRQSTES 250 ++ A L+ I + E + G DF A L K+ AG PD + +I+ Q+ Sbjct: 183 VFKATLEHQKIPVTTTEAYAKGDVDFKAQLTKIKAGNPDAIVCSCLAEEAANIILQTRAL 242 Query: 251 GFGNRFFLVRGSIGPALKN--KDAIEDYIAYVPKYFEGAEKTEPKVRAFIESYQKLFKRE 308 G F G P L KDA ++ + P AE P +AFI +Y+ F + Sbjct: 243 GMKQPFIGGNGLNSPKLFEIAKDAGDNTLMGSP---WSAENQTPANKAFITAYKAKFGAD 299 Query: 309 FPYDQAPLCSSSCYDHVYMLVEAMQKAGTVDDVAK----IRAALMSMTYEG-----MWRI 359 DQ ++ YD +Y++ +A++ ++AK +RAAL ++ +G +R Sbjct: 300 --PDQ---FAAQAYDAMYIVADALKNVKLSGNLAKDRDALRAALPAVKIDGATGKFAFRA 354 Query: 360 KYDKTGEAVFGFD-----VVHVRKGG 380 G+ V GFD +V++ KGG Sbjct: 355 APAVAGKQV-GFDADQEAIVNIAKGG 379