BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0120.0075.p         (138 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001772740.1| GntR family transcriptional regulator [Methy...   116   1e-24
ref|YP_001789121.1| GntR family transcriptional regulator [Lepto...   111   3e-23
ref|YP_002502298.1| GntR family transcriptional regulator [Methy...   110   7e-23
ref|ZP_00051070.1| COG1802: Transcriptional regulators [Magnetos...   107   4e-22
ref|YP_002822505.1| GntR family transcriptional regulator [Sinor...   107   6e-22

>ref|YP_001772740.1| GntR family transcriptional regulator [Methylobacterium sp. 4-46]
 gb|ACA20306.1| transcriptional regulator, GntR family [Methylobacterium sp. 4-46]
          Length = 251

 Score =  116 bits (290), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 58/104 (55%), Positives = 73/104 (70%)

Query: 6   KACEVAAREGDSEQYYADNRDFHEAIYRACRNSFLADQAFALRKRLSAYRRIQLRARNSL 65
           +AC  AA  GD+E YYA+N  FH  IYRA RN FL +QA  L +RL+ +RRIQLRAR+ L
Sbjct: 141 EACRKAAETGDTEAYYAENAVFHAVIYRASRNGFLCEQAVQLSRRLAPFRRIQLRARHRL 200

Query: 66  LQSLQEHAGILKAIRAGDEQLAASRLHDHVLVQGERFSDTVLGL 109
            QS  EHAG ++AI AGDE  A   +  HV+VQG+RF+D +L L
Sbjct: 201 GQSFAEHAGAVEAILAGDEARAGECMRAHVIVQGDRFADLILSL 244


>ref|YP_001789121.1| GntR family transcriptional regulator [Leptothrix cholodnii SP-6]
 gb|ACB32356.1| transcriptional regulator, GntR family [Leptothrix cholodnii SP-6]
          Length = 240

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/126 (47%), Positives = 81/126 (64%), Gaps = 3/126 (2%)

Query: 1   LDVTHKACEVAAREGDSEQYYADNRDFHEAIYRACRNSFLADQAFALRKRLSAYRRIQLR 60
           +   H+ C  AA E D + Y+  N  FH AIY +  N+FLA+QA AL+++L  YRR+QLR
Sbjct: 103 IQAAHERCRSAAGELDPDAYFYANEGFHRAIYDSAHNAFLAEQAQALQRKLRPYRRLQLR 162

Query: 61  ARNSLLQSLQEHAGILKAIRAGDEQLAASRLHDHVLVQGERFSDTVLGLAGDRRSASAGS 120
            RN L +S +EH GI+ AIR GD +LA + + +HV+VQGERF+D    LAG R+  SA  
Sbjct: 163 VRNRLQRSFEEHQGIVDAIRNGDAELAVNAVRNHVIVQGERFADL---LAGLRQLESAVP 219

Query: 121 RSGTAK 126
           R   A 
Sbjct: 220 RPSAAP 225


>ref|YP_002502298.1| GntR family transcriptional regulator [Methylobacterium nodulans
           ORS 2060]
 gb|ACL61995.1| transcriptional regulator, GntR family [Methylobacterium nodulans
           ORS 2060]
          Length = 218

 Score =  110 bits (275), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 69/102 (67%)

Query: 15  GDSEQYYADNRDFHEAIYRACRNSFLADQAFALRKRLSAYRRIQLRARNSLLQSLQEHAG 74
           GD+  YYA+N  FH  IYRA RN FL +QA  L +RL+ +RR+QLR RN L QS  EH  
Sbjct: 117 GDASAYYAENTVFHAVIYRASRNGFLCEQATQLSRRLAPFRRVQLRVRNRLAQSFAEHEA 176

Query: 75  ILKAIRAGDEQLAASRLHDHVLVQGERFSDTVLGLAGDRRSA 116
            ++AI AGD  LAA R+  HV+VQG+RFSD +L L  D  +A
Sbjct: 177 AVEAILAGDGALAAERMRAHVIVQGDRFSDLILSLRRDNAAA 218


>ref|ZP_00051070.1| COG1802: Transcriptional regulators [Magnetospirillum
           magnetotacticum MS-1]
          Length = 184

 Score =  107 bits (268), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 54/95 (56%), Positives = 65/95 (68%)

Query: 15  GDSEQYYADNRDFHEAIYRACRNSFLADQAFALRKRLSAYRRIQLRARNSLLQSLQEHAG 74
           GD E YY +N  FH  IYRACRN FL  QA AL +RLS YRR+QLRAR+ + QSL EH  
Sbjct: 82  GDPEAYYGENYVFHTVIYRACRNDFLCGQALALHRRLSPYRRLQLRARHRVGQSLAEHEA 141

Query: 75  ILKAIRAGDEQLAASRLHDHVLVQGERFSDTVLGL 109
           ++ AI AGD   AA +L  HVL+QG+ FS+ V  L
Sbjct: 142 VVAAILAGDGLAAADQLRRHVLIQGDGFSELVANL 176


>ref|YP_002822505.1| GntR family transcriptional regulator [Sinorhizobium fredii NGR234]
 gb|ACP21752.1| putative GntR, transcriptional regulator GntR [Sinorhizobium fredii
           NGR234]
          Length = 216

 Score =  107 bits (267), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/110 (50%), Positives = 68/110 (61%)

Query: 1   LDVTHKACEVAAREGDSEQYYADNRDFHEAIYRACRNSFLADQAFALRKRLSAYRRIQLR 60
           +   H+ CE +A  GDS+ YY DN +FH AIY A R+ FL +Q   L +RL  YRR+QLR
Sbjct: 105 ITAAHERCEHSAEAGDSDAYYYDNEEFHRAIYAASRSDFLEEQCTQLHRRLRPYRRLQLR 164

Query: 61  ARNSLLQSLQEHAGILKAIRAGDEQLAASRLHDHVLVQGERFSDTVLGLA 110
            RN L  S  EH GI+ AI AGD   A   L  HV +QGERFSD V  +A
Sbjct: 165 VRNRLTTSFSEHCGIVDAIFAGDGDEARRLLRSHVGIQGERFSDLVASMA 214