BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0120.0070.p (457 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773002.1| hypothetical protein bll6362 [Bradyrhizobium ja... 685 0.0 ref|YP_004618529.1| hypothetical protein Rta_14230 [Ramlibacter ... 327 3e-87 ref|YP_004126859.1| mmge/prpd family protein [Alicycliphilus den... 231 3e-58 ref|ZP_01155109.1| hypothetical protein OG2516_00599 [Oceanicola... 224 2e-56 ref|ZP_06054708.1| MmgE/PrpD family [alpha proteobacterium HIMB1... 222 1e-55 >ref|NP_773002.1| hypothetical protein bll6362 [Bradyrhizobium japonicum USDA 110] dbj|BAC51627.1| bll6362 [Bradyrhizobium japonicum USDA 110] Length = 477 Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/451 (78%), Positives = 389/451 (86%) Query: 1 MLDITRQTANFVAGLKLSDLSGRCREAARTGIIDCVGVMIAGAAEQPVRIVSAMVAASTQ 60 ML ITRQTA+FVA LK SD CR+AARTGI DCVGVMIAGAAE+ VRIVSAM +STQ Sbjct: 14 MLAITRQTASFVASLKASDPPQACRDAARTGITDCVGVMIAGAAEEAVRIVSAMSTSSTQ 73 Query: 61 NDGAPEVPSGRNLAAPDAALVNGVAAHVLDYDDVALAGHPSTVLVPAILAEGWSLDSSGA 120 NDGAPE+PSGRNL A DAALVNGVAAHVLDYDDVALAGHPS VLVPAILAEGWS +SG Sbjct: 74 NDGAPEIPSGRNLTASDAALVNGVAAHVLDYDDVALAGHPSAVLVPAILAEGWSRGASGP 133 Query: 121 DALAAYAAGYEVWAQVIALEPGHLHERGFHPTAVMGALATAAACARLRNLDSTKTAHAIA 180 D + AY GYE+WAQ+ ALEPG LHERGFHPTAVMGA+ATAAACA +R LDS KTAHAIA Sbjct: 134 DMVTAYVGGYELWAQLAALEPGQLHERGFHPTAVMGAVATAAACANIRRLDSEKTAHAIA 193 Query: 181 IAASLASGLVANFGTMTKSLHAGRTAQSGVLAARLADQGFTASLDVLEHQTGFLRAHSPS 240 IAASLASGLVANFGTMTKSLHAGRTAQSGV+AARLA+QGFT SLDVLEH+TGFLRAHSPS Sbjct: 194 IAASLASGLVANFGTMTKSLHAGRTAQSGVIAARLAEQGFTGSLDVLEHRTGFLRAHSPS 253 Query: 241 GTPEIENGTIDIGRNWRLADLGINVKRYPTCYATHRSIDAMIDLVKAHKLKPDDVKEIRV 300 G P IENGTIDIG NWRLA LG+NVKRYPTCYATHRSIDAM+ LV H LKP+ V EIRV Sbjct: 254 GQPRIENGTIDIGANWRLAHLGVNVKRYPTCYATHRSIDAMLGLVGKHGLKPERVGEIRV 313 Query: 301 HTGVTQRLMLRNTNPQTGLEAKFSMEFAMTAALIAGRVGLSELTDEFVSRPDVGATFAKV 360 HTG+TQ+LMLRN+NP+TGLEAKFSMEFAM AALIAGRVGL+EL+D FV R DV AKV Sbjct: 314 HTGITQKLMLRNSNPRTGLEAKFSMEFAMAAALIAGRVGLAELSDAFVCRDDVKDIIAKV 373 Query: 361 RCTTTDEIMPGDQPFAPDDRVSVVLASGEVLEHAPVVHAKGSWQRPLSRDELQDKFMDCA 420 RC+TT E+M GDQPFAP D+VS+ L SGE+L PV +AKGSWQ PL+R ELQDKF+DCA Sbjct: 374 RCSTTTEVMEGDQPFAPADQVSIELTSGEILTCEPVAYAKGSWQEPLTRGELQDKFLDCA 433 Query: 421 TRVFKQGQAAALFEQLWNIEDLGSIRSLRLT 451 TRVF + QA LF+QLW+IE LGSIR LRLT Sbjct: 434 TRVFDRNQATILFDQLWDIERLGSIRELRLT 464 >ref|YP_004618529.1| hypothetical protein Rta_14230 [Ramlibacter tataouinensis TTB310] gb|AEG92510.1| conserved hypothetical protein [Ramlibacter tataouinensis TTB310] Length = 447 Score = 327 bits (838), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 197/451 (43%), Positives = 255/451 (56%), Gaps = 26/451 (5%) Query: 4 ITRQTANFVAGLKLSDLSGRCREAARTGIIDCVGVMIAGAAEQPVRIVSAMVAASTQNDG 63 +TR+ FVA + G R A G ID G +IA E V+ + +A Sbjct: 6 LTRELGRFVARVAREGAPGEARAVACVGFIDTTGTLIAARQEDAVQTLLRALA------- 58 Query: 64 APEVPSGR--------NLAAPDAALVNGVAAHVLDYDDVALAGHPSTVLVPAILAEGWSL 115 +P GR A AALVNG AAH LDYDDVAL GHPS VLVPAI++ + Sbjct: 59 --PLPPGRARLLYGAQTTDAGTAALVNGTAAHALDYDDVALRGHPSAVLVPAIVSLATEM 116 Query: 116 DSSGADALAAYAAGYEVWAQVIALEPGHLHERGFHPTAVMGALATAAACARLRNLDSTKT 175 SGA L AY AGYEVW +++ E G H +G+HPT + G++ AAA A L LD ++ Sbjct: 117 GCSGARMLDAYVAGYEVWGELVDRETGIHHLKGWHPTGIFGSIGAAAAAAVLLELDEEQS 176 Query: 176 AHAIAIAASLASGLVANFGTMTKSLHAGRTAQSGVLAARLADQGFTASLDVLEHQTGFLR 235 HA+ + AS ++GL++NFG M+K HAGR AQ+GVL+ARLA GFTAS D LEH GFL Sbjct: 177 MHALGLGASQSAGLMSNFGAMSKPFHAGRAAQAGVLSARLARAGFTASADALEHPQGFLA 236 Query: 236 AHSPSGTPEIENGTIDIGRNWRLADLGINVKRYPTCYATHRSIDAMIDLVKAHKLKPDDV 295 A SP G + + + W+L +NVKRYP CY THRS+D M+ L P+DV Sbjct: 237 AVSPRGEVDPVR-EVAVHARWQLPARRMNVKRYPLCYYTHRSLDCMLALRATCPFAPEDV 295 Query: 296 KEIRVHTGVTQRLMLRNTNPQTGLEAKFSMEFAMTAALIAGRVGLSELTDEFVSRPDVGA 355 + + VH +LRN P TGL AKFS+EFAM +A++AGR GL ELTD FV +P V Sbjct: 296 EGVEVHMSQEHATVLRNHRPTTGLAAKFSIEFAMASAIVAGRAGLGELTDGFVQQPLVQR 355 Query: 356 TFAKVRCTTTDEIMPGDQPFAP----DDRVSVVLASGEVLEHAPVVHAKGSWQRPLSRDE 411 +V +P D P P D+V V L G VL+ PV A G +RPL + Sbjct: 356 LIERVYVMA----IPADDPHTPAAAWADQVIVTLKDGSVLQGEPVHQALGHAERPLGPAD 411 Query: 412 LQDKFMDCATRVFKQGQAAALFEQLWNIEDL 442 L+ KF+D +G A ALF+QL +E + Sbjct: 412 LRAKFVDALAHGRYEGDAQALFDQLAALEQM 442 >ref|YP_004126859.1| mmge/prpd family protein [Alicycliphilus denitrificans BC] gb|ADU99971.1| MmgE/PrpD family protein [Alicycliphilus denitrificans BC] Length = 454 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 167/439 (38%), Positives = 226/439 (51%), Gaps = 16/439 (3%) Query: 4 ITRQTANFVAGLKLSDLSGRCREAARTGIIDCVGVMIAGAAEQPVRIVSAMVAASTQNDG 63 +TR A FVAGL+ + R+ A + DC+G +AGA ++ RI AA+ G Sbjct: 6 LTRALAAFVAGLRTEHVPPAARQEACRAMADCLGGAVAGARDEVARIA----AATQARPG 61 Query: 64 APEVPSGRNLAAP--DAALVNGVAAHVLDYDDV--ALAGHPSTVLVPAILAEGWSLDSSG 119 + G L A DAALVNG AAH DD ++ GHPS LVPAILA G +D+ G Sbjct: 62 GACILWGTGLRADVHDAALVNGCAAHAHALDDTHESMRGHPSAPLVPAILAVGELVDAGG 121 Query: 120 ADALAAYAAGYEVWAQVIALEPGHLHERGFHPTAVMGALATAAACARLRNLDSTKTAHAI 179 D AY AG EV ++ + G+H T +G + AAACA L LD+ +TAHA+ Sbjct: 122 DDLATAYIAGAEVACRLGRSVNDRHSQLGWHTTGTLGPVGAAAACAWLLRLDAGRTAHAL 181 Query: 180 AIAASLASGLVANFGTMTKSLHAGRTAQSGVLAARLADQGFTASLDVLEHQTGFLRAHSP 239 IAAS+A GL NFGTM K+LHAG AQ GV AARLA G TAS LE GFL+ Sbjct: 182 GIAASMAGGLRVNFGTMAKALHAGMAAQHGVQAARLAAGGMTASTAALEGHEGFLQLFCD 241 Query: 240 SGTPEIENGTIDIGRNWRLADLGINVKRYPTCYATHRSIDAMIDLVKAHKLKPDDVKEIR 299 G+ + +GR++ + GI K+YPTC H ID ++ L P D E+R Sbjct: 242 DGSQDAARALRGLGRHFEVLTPGIVYKQYPTCSLMHALIDMVLQARAQGLLTPADGLELR 301 Query: 300 VHTGVTQRL-MLRNTN-PQTGLEAKFSMEFAMTAALIAGRVGLSELTDEFVSRPDVGATF 357 ++QRL +R + P TGL AKF +E+ + A+ G G+++ TD + RP + Sbjct: 302 C--AISQRLEAVRGKDWPATGLAAKFCVEYCVAVAVQEGSQGIADFTDAAIHRPGLRELA 359 Query: 358 AKVRCTTTDEIMPGDQPFAPDDRVSVVLASGEVLEHAPVVHAKGSWQRPLSRDELQDKFM 417 +VR + + PG+ D VVL G + G PLS + + KFM Sbjct: 360 QRVRLSQGQDFPPGNG----DCAELVVLRDGREVLRRRQAKPCGHPSMPLSPAQHEAKFM 415 Query: 418 DCATRVFKQGQAAALFEQL 436 CA V +A L + L Sbjct: 416 ACAAPVLGTAKARRLLQAL 434 >ref|ZP_01155109.1| hypothetical protein OG2516_00599 [Oceanicola granulosus HTCC2516] gb|EAR52680.1| hypothetical protein OG2516_00599 [Oceanicola granulosus HTCC2516] Length = 480 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 165/478 (34%), Positives = 241/478 (50%), Gaps = 50/478 (10%) Query: 4 ITRQTANFVAGLKLSDLSGRCREAARTGIIDCVGVMIAGA-AEQPVRIVSAMVAASTQND 62 +T + A+FV G +SDL G E + I+D +G+ ++G+ A ++ + + + Sbjct: 21 LTAEVADFVLGTSISDLPGVVVENGKKSILDGLGLALSGSVAASGDKVRRHLQSLNLGAG 80 Query: 63 GAPEVPSGRNLAAPDAALVNGVAAHVLDYDDVALA----------GHPSTVLVPAILAEG 112 GA + S +A AA NGV H DYDD LA HP+ +PA LA G Sbjct: 81 GATVIGSSMKVAPRFAAFANGVGIHADDYDDTQLAVAPDRVYGLLTHPTAPALPAALAAG 140 Query: 113 WSLDSSGADALAAYAAGYEVWAQVI-ALEPGHLHERGFHPTAVMGALATAAACARLRNLD 171 S +SGAD + AY G EV ++ A+ P H ++ GFH TA G A A+A RL LD Sbjct: 141 ESRGASGADVMLAYHLGVEVECKIAEAINPRH-YQTGFHATATCGTFAAASAAGRLSGLD 199 Query: 172 STKTAHAIAIAASLASGLVANFGTMTKSLHAGRTAQSGVLAARLADQGFTASLDVLEHQT 231 A+++A S ++GL NFGTMTK HAGR+++SGV+A +AD G++AS ++LE Sbjct: 200 KETLLRALSVAGSQSAGLRENFGTMTKPFHAGRSSESGVVAVEMADLGWSASPNILEAMR 259 Query: 232 GFLRAHSPSGTPEIENGTIDIGRNWRLADLGINVKRYPTCYATHRSIDAMIDLVKAHKLK 291 GF RA G +G W + G+++K +P+ TH + M+ L+ + +K Sbjct: 260 GFFRAAGGGYDGGAIRGK--LGAPWTFDEPGVSIKPHPSGSLTHPGMTEMLRLIAENDIK 317 Query: 292 PDDVKEIRVHTGVTQRLMLRNTNPQTGLEAKFSMEFAMTAALIAGRVGLSELTDEFVSRP 351 D V+ +RV T L + P L+AKFSMEF M LI GR GL+E TDE V+RP Sbjct: 318 ADQVEHVRVGTNSNMPNALIHHRPTNELQAKFSMEFCMAILLIEGRGGLNEFTDEVVNRP 377 Query: 352 DVGATFAKVRCTTTDEIMPGDQPFAPDDR------------VSVVLASGEVLEHAPVVHA 399 DV A KV F DDR + + L G + Sbjct: 378 DVQAMIEKV-------------DFVVDDRAEAAGYHKMTTYIDIKLKDGRTIS-GMADFG 423 Query: 400 KGSWQRPLSRDELQDKFMDCA-------TRVFKQGQAAALFEQLWNIEDLGSIRSLRL 450 KGS P+S DE+ KF +CA +R + + A FE+ ++++L + +LRL Sbjct: 424 KGSPAHPMSYDEVAGKFHECAEFAGWDRSRAERVVEIVAGFEKQSSLDEL--MAALRL 479 >ref|ZP_06054708.1| MmgE/PrpD family [alpha proteobacterium HIMB114] gb|EEY74477.1| MmgE/PrpD family [alpha proteobacterium HIMB114] Length = 474 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 147/462 (31%), Positives = 237/462 (51%), Gaps = 19/462 (4%) Query: 3 DITRQTANFVAGLKLSDLSGRCREAARTGIIDCVGVMIAGAAEQPVRIVSAMVAASTQND 62 ++T+ A FV K + + + E + I+D G+ ++G+ + + + ++ Sbjct: 16 NLTKYVAEFVKKNKYNSIPKKVVELGKKHILDGFGLALSGSVARTGDYLFKHIKQNSAKG 75 Query: 63 GAPEVPSGRNLAAPDAALVNGVAAHVLDYDDVALA----------GHPSTVLVPAILAEG 112 A + S + + AAL NG H DYDD LA HP+ +P+ LAEG Sbjct: 76 RATVIGSKMKVTSRFAALANGTGIHSDDYDDTQLAVQKDRVYGLLTHPTAPCLPSALAEG 135 Query: 113 WSLDSSGADALAAYAAGYEVWAQVI-ALEPGHLHERGFHPTAVMGALATAAACARLRNLD 171 +G D L AY G +V +V A+ P H ++ GFH TA G LA+A+A A++R + Sbjct: 136 ELKKINGKDFLNAYLIGVDVECKVSEAMSPRH-YQHGFHSTATCGTLASASAAAKIRGYN 194 Query: 172 STKTAHAIAIAASLASGLVANFGTMTKSLHAGRTAQSGVLAARLADQGFTASLDVLEHQT 231 K ++AIAASL++GL NFGTMTK LHAGR A+SGV+A L G++A+ +LE Sbjct: 195 VDKIQRSLAIAASLSAGLRENFGTMTKPLHAGRAAESGVVACDLVGYGWSATDKILESPR 254 Query: 232 GFLRAHSPSGTPEIENGTIDIGRNWRLADLGINVKRYPTCYATHRSIDAMIDLVKAHKLK 291 GF +AH G + + +GR W + GI++K +P TH + M++L+ H +K Sbjct: 255 GFFQAH--GGGYNLNSIKGQLGRPWTFSKPGISIKPHPCGSLTHPGMTKMLELILKHDIK 312 Query: 292 PDDVKEIRVHTGVTQRLMLRNTNPQTGLEAKFSMEFAMTAALIAGRVGLSELTDEFVSRP 351 P DV ++ V T + L + P +AKFSME++M L+ R + E D+ +++P Sbjct: 313 PQDVVKVDVGTNHNMQNALIHHRPTNEFQAKFSMEYSMAILLVQRRAYIPEYQDKRINKP 372 Query: 352 DVGATFAKVRCTTTDEIMPGDQPFAPDDRVSVVLASGEVLEHAPVVHAKGSWQRPLSRDE 411 DV K+ +++ + + L +G+ + KGS P+S DE Sbjct: 373 DVQKMLRKINF-YKNKVAEAAGYDKMTTIIDIYLKNGKKIS-GRGDFGKGSPMIPMSYDE 430 Query: 412 LQDKFMDCATRV-FKQGQAAALFEQLWNIEDLGSIRSLRLTN 452 + DKF+ C + ++ A+ E + ++E L IR +LTN Sbjct: 431 VADKFLGCCEFAKWPTKKSKAIIETVRHLEKLKDIR--KLTN 470