BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0120.0066.p (387 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773006.1| hypothetical protein bll6366 [Bradyrhizobium ja... 639 0.0 ref|YP_004618524.1| formyl-coenzyme A transferase [Ramlibacter t... 377 e-102 ref|ZP_02885626.1| L-carnitine dehydratase/bile acid-inducible p... 376 e-102 ref|NP_882337.1| CAIB/BAIF family protein [Bordetella pertussis ... 355 7e-96 ref|YP_004387400.1| formyl-CoA transferase [Alicycliphilus denit... 345 8e-93 >ref|NP_773006.1| hypothetical protein bll6366 [Bradyrhizobium japonicum USDA 110] dbj|BAC51631.1| bll6366 [Bradyrhizobium japonicum USDA 110] Length = 403 Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust. Identities = 309/385 (80%), Positives = 342/385 (88%) Query: 3 VDKPLAGITVVELGHSVAAPYAGLILADLGARVIKVENPKSGDYARGWGPPFWNGTASVF 62 +D PL GITVVELGHSVAAPYAGLILADLGARVIKVENP+SGDYARGWGPPFW TAS+F Sbjct: 19 IDSPLEGITVVELGHSVAAPYAGLILADLGARVIKVENPRSGDYARGWGPPFWRDTASLF 78 Query: 63 HSLNRGKEGITVDFGAAEDCEKLKSLILNEADAVIQNLRPGILDKFGLTADALSAAKPSL 122 H+LNRGKEG+TVDFG A+DC +LKSLI+ +ADAVIQNLRPGILDKFGLTA+ L A KP L Sbjct: 79 HALNRGKEGVTVDFGDAQDCARLKSLIVEQADAVIQNLRPGILDKFGLTAETLRAEKPEL 138 Query: 123 IWCDIGAFGAKGPLASKPGYDPLAQASTGIMSVTGEGGRPPVRVGVSLVDMGSGMWAVIG 182 IWCDIGAFGAKGPLA+KPGYDPLAQA+TGIMSVTGEG RPPVRVGVSLVDMGSGMWA+IG Sbjct: 139 IWCDIGAFGAKGPLANKPGYDPLAQATTGIMSVTGEGDRPPVRVGVSLVDMGSGMWAIIG 198 Query: 183 MLAALVARNKGGQGRSVATSLYETGLAWMTVPLAGYAASGEVRKPYGSGTAEIAPYQAFE 242 +LA L+AR G +GR+V+TSLYETGLAWMT PLAG+AASGEVRKP+GSG AEI PYQAF+ Sbjct: 199 LLAGLIARMNGREGRTVSTSLYETGLAWMTGPLAGFAASGEVRKPHGSGAAEIVPYQAFQ 258 Query: 243 ASDGWLMIAAGNDNLFRKLCVALSLEALAHDPDFATNAARVVNRERLIPQIAAAVRKYTA 302 ASDGWLMIAAGNDNLFRKLC AL LEAL+ DP F TNAARV NR+RLIPQI A +Y+A Sbjct: 259 ASDGWLMIAAGNDNLFRKLCGALGLEALSVDPAFVTNAARVANRDRLIPQIEVAALRYSA 318 Query: 303 DALGGILDGAGVPNAPLLTTDQVAEHPQTRALDMMVRCAGDDIDLVGVPLAFDGTRPRAR 362 +ALG +LD AGVPNAPLL+ DQVA HPQT AL+M VRC GD+IDLVG+PLAFDG RPRAR Sbjct: 319 EALGKLLDEAGVPNAPLLSVDQVAMHPQTSALEMTVRCVGDEIDLVGIPLAFDGARPRAR 378 Query: 363 TAAPALGQHNAILRKPASKGAINAN 387 T AP LG+HNAILR ASK A+NA Sbjct: 379 TQAPRLGEHNAILRTQASKEAVNAK 403 >ref|YP_004618524.1| formyl-coenzyme A transferase [Ramlibacter tataouinensis TTB310] gb|AEG92505.1| formyl-coenzyme A transferase (Formyl-CoA transferase)-like protein [Ramlibacter tataouinensis TTB310] Length = 386 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 196/373 (52%), Positives = 244/373 (65%), Gaps = 1/373 (0%) Query: 1 MDVDKPLAGITVVELGHSVAAPYAGLILADLGARVIKVENPKSGDYARGWGPPFWNGTAS 60 M +PLAG TVVE+GHSVAAPY G ILA LGA +IKVENP+ GD ARGWGPPF G+A Sbjct: 1 MSHSQPLAGFTVVEIGHSVAAPYTGFILAGLGAELIKVENPEGGDAARGWGPPFHAGSAP 60 Query: 61 VFHSLNRGKEGITVDFGAAEDCEKLKSLILNEADAVIQNLRPGILDKFGLTADALSAAKP 120 F + NR K +T D + L+ IL++ADAVI N+R G ++ G+ L A P Sbjct: 61 HFTAFNRDKHSVTADLRDPAQRDALREFILDKADAVICNMRAGAAEELGVGPIGLREADP 120 Query: 121 SLIWCDIGAFGAKGPLASKPGYDPLAQASTGIMSVTGEG-GRPPVRVGVSLVDMGSGMWA 179 SL++C+IGAFG GP+A KPGYDPL QA G+MS+TGE RPP+RVGVS++DMGSGMW Sbjct: 121 SLVYCEIGAFGHVGPMADKPGYDPLMQAYGGMMSITGESVERPPIRVGVSIIDMGSGMWG 180 Query: 180 VIGMLAALVARNKGGQGRSVATSLYETGLAWMTVPLAGYAASGEVRKPYGSGTAEIAPYQ 239 IG++ AL+ R + G G V TSL+ET LAW P+ SG+ + P GSG A I PYQ Sbjct: 181 AIGIMGALIERRRTGIGTVVRTSLFETALAWTATPICRQQMSGQPQLPQGSGAAGIVPYQ 240 Query: 240 AFEASDGWLMIAAGNDNLFRKLCVALSLEALAHDPDFATNAARVVNRERLIPQIAAAVRK 299 AF+ DGWL+I AGND LF KL A+ LA D F TN RV N+ +L+P I A Sbjct: 241 AFKTQDGWLVIGAGNDGLFAKLARAMQRPDLASDERFRTNRGRVSNKAQLLPLIKAFAAG 300 Query: 300 YTADALGGILDGAGVPNAPLLTTDQVAEHPQTRALDMMVRCAGDDIDLVGVPLAFDGTRP 359 +T LG +LD AGVPNAP+ T QV PQT AL ++ + VG+PL +DG RP Sbjct: 301 FTNRQLGALLDEAGVPNAPVQTIGQVVADPQTAALGIVQQGPEGAFPTVGLPLTYDGERP 360 Query: 360 RARTAAPALGQHN 372 R AAPALG++ Sbjct: 361 PYRRAAPALGENT 373 >ref|ZP_02885626.1| L-carnitine dehydratase/bile acid-inducible protein F [Burkholderia graminis C4D1M] gb|EDT08782.1| L-carnitine dehydratase/bile acid-inducible protein F [Burkholderia graminis C4D1M] Length = 400 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 194/383 (50%), Positives = 254/383 (66%), Gaps = 7/383 (1%) Query: 6 PLAGITVVELGHSVAAPYAGLILADLGARVIKVENPKSGDYARGWGPPFWNGTASVFHSL 65 PL I VVE+GHS+AAPYAG+ILA LGARV+K+EN GDYARGWGPPF +G +++FH++ Sbjct: 11 PLEDICVVEIGHSLAAPYAGIILAHLGARVVKIENAAQGDYARGWGPPFIDGASALFHAM 70 Query: 66 NRGKEGITVDFGAAEDCEKLKSLILNEADAVIQNLRPGILDKFGLTADALSAAKPSLIWC 125 N GKE I+ DFG ++ I+ AD V+QNLRPG LD++GL A L+ PSL++C Sbjct: 71 NHGKESISADFGDPACARSIRDFIVENADVVLQNLRPGNLDRYGLGAQDLTELCPSLVYC 130 Query: 126 DIGAFGAKGPLASKPGYDPLAQASTGIMSVTGEGGRPPVRVGVSLVDMGSGMWAVIGMLA 185 ++GAFGA GPL +KPGYDPL QA +G+MS+ G P RV VS+ DMG+GMWAVIG+LA Sbjct: 131 NLGAFGATGPLRNKPGYDPLVQAYSGMMSIVGHADDAPSRVPVSINDMGTGMWAVIGVLA 190 Query: 186 ALVARNKG----GQGRSVATSLYETGLAWMTVPLAGYAASGEVRKPYGSGTAEIAPYQAF 241 AL R+KG +GR V SLYET LAWMTVPL+ A G GSG+ I PYQ F Sbjct: 191 AL--RDKGRDDPERGRIVDVSLYETALAWMTVPLSDCLAGGPEPTRIGSGSPNIVPYQVF 248 Query: 242 EASDGWLMIAAGNDNLFRKLCVALSLEALAHDPDFATNAARVVNRERLIPQIAAAVRKYT 301 + +DG +++AAGND L+R+LC + L +LA DP F+TN RV+NR+ LIP + A + Sbjct: 249 DCTDGAILVAAGNDTLYRRLCNVMDLPSLADDPRFSTNGDRVLNRKVLIPLLEARFAQKP 308 Query: 302 ADALGGILDGAGVPNAPLLTTDQVAEHPQTRALDMMVRCAGDDIDLVGVPLAFDGTRPRA 361 A L+ +P PL T D+V + QT +LD++ R V +P++FDG RP Sbjct: 309 AGDWLNALEAGSIPCGPLQTVDRVVTNEQTASLDILRRTPDGRTTTVALPVSFDGRRPPL 368 Query: 362 RTAAPALGQHNAIL-RKPASKGA 383 P LG+HN +L R PA A Sbjct: 369 PGNTPGLGEHNHLLIRTPAHDRA 391 >ref|NP_882337.1| CAIB/BAIF family protein [Bordetella pertussis Tohama I] emb|CAE44096.1| CAIB/BAIF family protein [Bordetella pertussis Tohama I] gb|AEE68951.1| CAIB/BAIF family protein [Bordetella pertussis CS] Length = 384 Score = 355 bits (911), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 184/372 (49%), Positives = 240/372 (64%), Gaps = 1/372 (0%) Query: 1 MDVDKPLAGITVVELGHSVAAPYAGLILADLGARVIKVENPKSGDYARGWGPPFWNGTAS 60 M D PL GITVVEL + + P+ G +LA LGA V KVE P GD +RGWGP W G+ + Sbjct: 1 MSADLPLQGITVVELSDNASLPFGGQVLAGLGAEVWKVERP-GGDASRGWGPSMWRGSGA 59 Query: 61 VFHSLNRGKEGITVDFGAAEDCEKLKSLILNEADAVIQNLRPGILDKFGLTADALSAAKP 120 FH+LNRGK+ I VD + LK LI + AD NLRPG ++GL + L A KP Sbjct: 60 AFHALNRGKKSICVDVKDPAQLDMLKDLIFSHADVFAHNLRPGSAGQYGLDPETLRARKP 119 Query: 121 SLIWCDIGAFGAKGPLASKPGYDPLAQASTGIMSVTGEGGRPPVRVGVSLVDMGSGMWAV 180 LI C++GAFG GPL+ P YDPL QA +GIMS+TGE G+PP R GVS+VD GSGMW+V Sbjct: 120 ELICCELGAFGHVGPLSRDPDYDPLMQAFSGIMSLTGENGQPPSRSGVSIVDFGSGMWSV 179 Query: 181 IGMLAALVARNKGGQGRSVATSLYETGLAWMTVPLAGYAASGEVRKPYGSGTAEIAPYQA 240 IG+++AL R + GQG +V SL ET +AWM+V +A YA GE+ Y SG A I P++A Sbjct: 180 IGVISALYRRRRTGQGATVNASLLETAMAWMSVGIANYATDGEIGSRYDSGIAFIVPHRA 239 Query: 241 FEASDGWLMIAAGNDNLFRKLCVALSLEALAHDPDFATNAARVVNRERLIPQIAAAVRKY 300 +E DG+L+++ ND LF KL VAL A DP FATNA R+ +R + I + + Sbjct: 240 YETMDGYLIVSCANDRLFGKLSVALDHPEWAVDPRFATNAGRLAHRGEIDGLIGECLARN 299 Query: 301 TADALGGILDGAGVPNAPLLTTDQVAEHPQTRALDMMVRCAGDDIDLVGVPLAFDGTRPR 360 T + L+ GV +AP+ TT ++ EH QTRAL ++ R D+I+ VGVP++FDG RP Sbjct: 300 TREYWKAQLEKFGVASAPIQTTAEIFEHEQTRALGILGRPTADEIECVGVPISFDGVRPA 359 Query: 361 ARTAAPALGQHN 372 AAP +GQ N Sbjct: 360 PLGAAPDVGQFN 371 >ref|YP_004387400.1| formyl-CoA transferase [Alicycliphilus denitrificans K601] gb|AEB83884.1| Formyl-CoA transferase [Alicycliphilus denitrificans K601] Length = 385 Score = 345 bits (885), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 180/374 (48%), Positives = 244/374 (65%), Gaps = 1/374 (0%) Query: 4 DKPLAGITVVELGHSVAAPYAGLILADLGARVIKVENPKSGDYARGWGPPFWNGTASVFH 63 D PLAG TVVEL S +AP+AG +LA LGA V KVE P GD ARGWGP W G + FH Sbjct: 8 DLPLAGFTVVELSDSASAPFAGHVLAGLGAEVWKVERP-GGDSARGWGPSQWKGCGAAFH 66 Query: 64 SLNRGKEGITVDFGAAEDCEKLKSLILNEADAVIQNLRPGILDKFGLTADALSAAKPSLI 123 ++NRGK I +D L LI AD + NLRPG ++ L ++L A KPSL+ Sbjct: 67 AINRGKRSICLDIKDPVQLATLHDLIERHADVFLHNLRPGSSGQYRLDPESLRARKPSLV 126 Query: 124 WCDIGAFGAKGPLASKPGYDPLAQASTGIMSVTGEGGRPPVRVGVSLVDMGSGMWAVIGM 183 C++GA+G GPL + PGYDPL QA +GIM +TGE G+ PVR GVS+VD G+GMWAVIG+ Sbjct: 127 VCEVGAYGHVGPLNTLPGYDPLMQAFSGIMMLTGEDGQAPVRAGVSIVDFGTGMWAVIGI 186 Query: 184 LAALVARNKGGQGRSVATSLYETGLAWMTVPLAGYAASGEVRKPYGSGTAEIAPYQAFEA 243 ++AL+ R + G +V +SL ET +AWM++ +A YAA G+ +GSG A I P++A+EA Sbjct: 187 VSALLRRERRKIGATVNSSLLETAIAWMSIGIANYAADGDPGGRHGSGVAFIVPHRAYEA 246 Query: 244 SDGWLMIAAGNDNLFRKLCVALSLEALAHDPDFATNAARVVNRERLIPQIAAAVRKYTAD 303 +DG+ +I+A ND LF +L AL DP FATNA R+ NR+ + I ++++T + Sbjct: 247 ADGYAIISAANDRLFARLAEALGHPEWGTDPKFATNAGRLANRQEIDGLIGQVMKRHTRE 306 Query: 304 ALGGILDGAGVPNAPLLTTDQVAEHPQTRALDMMVRCAGDDIDLVGVPLAFDGTRPRART 363 DG G+P A + TT ++ H QTRAL ++ + + D+IDLVGVPL+FD RP Sbjct: 307 YWQKHFDGFGLPCASVQTTAELYAHEQTRALGILGKTSEDEIDLVGVPLSFDRQRPPPLD 366 Query: 364 AAPALGQHNAILRK 377 +AP +GQ N LR+ Sbjct: 367 SAPEVGQDNERLRQ 380