BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0120.0060.p (258 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773010.1| ABC transporter permease protein [Bradyrhizobiu... 381 e-104 ref|YP_004487018.1| ABC transporter integral membrane protein [D... 302 3e-80 ref|YP_785507.1| ABC transporter permease [Bordetella avium 197N... 164 2e-38 ref|YP_004125026.1| inner-membrane translocator [Alicycliphilus ... 147 1e-33 ref|YP_002564903.1| inner-membrane translocator [Halorubrum lacu... 143 3e-32 >ref|NP_773010.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC51635.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 288 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 212/258 (82%), Positives = 239/258 (92%) Query: 1 VQGFVATSLIGISLGAQYALLALGFTLIFGILGVVNFAHGGFYVLGGYLAYSAVTYLGMP 60 ++G VAT LIG+SLGAQYALLALGFTL+FGILGVVNFAHGGFYVLGGYLAYS++ +LG P Sbjct: 1 MEGIVATLLIGVSLGAQYALLALGFTLVFGILGVVNFAHGGFYVLGGYLAYSSMAFLGAP 60 Query: 61 YALAVICAALGTTVLGFLFERFVLDRVIDDHLATLMLTLGLYLMMSSGILVVFGPQSPAF 120 Y +AVI AALGT LG+LFERF+LDR+++DHL+TLMLTLGLYLMMSSG+L VFGPQSPAF Sbjct: 61 YLIAVIVAALGTAALGYLFERFLLDRLVNDHLSTLMLTLGLYLMMSSGLLAVFGPQSPAF 120 Query: 121 AFPLTGVIHGHGFFVPIENLVVLGVCIIGILSIYGLIYYTDFGRALRAMADDRAVATAQG 180 FPLTGV+ HGFF+PIENLVVL VC++GI S+Y L+Y +DFGRALRA+ADDRAVATAQG Sbjct: 121 TFPLTGVLRWHGFFIPIENLVVLVVCLVGISSVYALMYRSDFGRALRALADDRAVATAQG 180 Query: 181 LRPAILFPAAFALATGLAGLTGALVTPILSLAPHIGDPVLATSFLIVILGGLGSVGGATV 240 LRP +LFPAAFALATGLAGLTGALVTPILSLAPH+GDPVLATSFLIVILGGLGS+GGAT Sbjct: 181 LRPKLLFPAAFALATGLAGLTGALVTPILSLAPHVGDPVLATSFLIVILGGLGSIGGATA 240 Query: 241 AAFIVGMAEAFSAVYLGG 258 AAF+VGM EAFSAVYLGG Sbjct: 241 AAFLVGMVEAFSAVYLGG 258 >ref|YP_004487018.1| ABC transporter integral membrane protein [Delftia sp. Cs1-4] gb|AEF88663.1| ABC-type transporter, integral membrane subunit [Delftia sp. Cs1-4] Length = 288 Score = 302 bits (774), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 158/258 (61%), Positives = 204/258 (79%) Query: 1 VQGFVATSLIGISLGAQYALLALGFTLIFGILGVVNFAHGGFYVLGGYLAYSAVTYLGMP 60 ++ ++T +IG+SLG QYALL+LGFTLIFGILGV+NFAHGGFYVLGGY AYS G+P Sbjct: 1 MESVISTGVIGLSLGTQYALLSLGFTLIFGILGVINFAHGGFYVLGGYAAYSLSHLAGLP 60 Query: 61 YALAVICAALGTTVLGFLFERFVLDRVIDDHLATLMLTLGLYLMMSSGILVVFGPQSPAF 120 + LAV AAL ++G++ E ++ ++DHL T+M+TLG+YL+M++ + VVFGP+ P F Sbjct: 61 FPLAVAAAALACGIVGYVMELLFVEPRVNDHLTTMMITLGMYLIMTTAVTVVFGPEPPEF 120 Query: 121 AFPLTGVIHGHGFFVPIENLVVLGVCIIGILSIYGLIYYTDFGRALRAMADDRAVATAQG 180 FP++G HGF++P N++V VC + I +Y +++ T FG ALRAMADDRAVA AQG Sbjct: 121 RFPVSGSYRAHGFYIPYSNMIVFAVCALVIGGVYLMMFKTRFGIALRAMADDRAVAIAQG 180 Query: 181 LRPAILFPAAFALATGLAGLTGALVTPILSLAPHIGDPVLATSFLIVILGGLGSVGGATV 240 LRPA +FP AF LATGLAGLTGALVTPIL+L PH GD VLA +F++VILGGLGS+ GATV Sbjct: 181 LRPAQMFPMAFGLATGLAGLTGALVTPILALEPHAGDAVLAKAFIVVILGGLGSITGATV 240 Query: 241 AAFIVGMAEAFSAVYLGG 258 AAFIVG+ EA+S+VYLGG Sbjct: 241 AAFIVGIVEAYSSVYLGG 258 >ref|YP_785507.1| ABC transporter permease [Bordetella avium 197N] emb|CAJ48592.1| ABC transporter, permease protein [Bordetella avium 197N] Length = 285 Score = 164 bits (414), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 100/239 (41%), Positives = 146/239 (61%), Gaps = 2/239 (0%) Query: 18 YALLALGFTLIFGILGVVNFAHGGFYVLGGYLAYSAVTYLGMPYALAVICAALGTTVLGF 77 YAL+ALGFTL+FGIL VVNFAHG FY+LG Y + L PY A+ AAL VLG Sbjct: 18 YALVALGFTLVFGILRVVNFAHGEFYMLGAYAMFIFYGTLSWPYLPALATAALAVGVLGL 77 Query: 78 LFERFVLDRVIDDHLATLMLTLGLYLMMSSGILVVFGPQSPAFAFPLTGVIH-GHGFFVP 136 L ER + R D + ++++L L + + + I +VF + P+ G G FF Sbjct: 78 LVERGLFRRFTGDEMGGMIMSLALAITLQAAISLVFSVDEQSVRRPVEGAWQIGPAFFAK 137 Query: 137 IENLVVLGVCIIGILSIYGLIYYTDFGRALRAMADDRAVATAQGLRPAILFPAAFALATG 196 + L+++GV +I + + Y LI T G +RA+A DR VA QG+ + FAL+ G Sbjct: 138 -DQLLIVGVSVIALAAFYFLIERTRLGITIRAVAQDREVARLQGVSSRKIMAFTFALSCG 196 Query: 197 LAGLTGALVTPILSLAPHIGDPVLATSFLIVILGGLGSVGGATVAAFIVGMAEAFSAVY 255 LAGL+GAL+ P+ ++ P++G+ V+ +F+IV+LGGLGS+ GA VA+ I+ EA +A + Sbjct: 197 LAGLSGALMAPVYTIHPYMGETVVVKAFIIVVLGGLGSLPGAVVASLILSFTEAIAATF 255 >ref|YP_004125026.1| inner-membrane translocator [Alicycliphilus denitrificans BC] ref|YP_004386250.1| ABC transporter integral membrane subunit [Alicycliphilus denitrificans K601] gb|ADU98138.1| inner-membrane translocator [Alicycliphilus denitrificans BC] gb|AEB82734.1| ABC-type transporter, integral membrane subunit [Alicycliphilus denitrificans K601] Length = 289 Score = 147 bits (372), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 89/236 (37%), Positives = 146/236 (61%) Query: 21 LALGFTLIFGILGVVNFAHGGFYVLGGYLAYSAVTYLGMPYALAVICAALGTTVLGFLFE 80 +A+GFTL+FG++ VVNFAHG FY+LG +LAY VT L +P+ AV+ T V G++ E Sbjct: 24 MAIGFTLVFGVMRVVNFAHGEFYMLGAFLAYVCVTRLQLPFLAAVLATFAVTLVAGWIIE 83 Query: 81 RFVLDRVIDDHLATLMLTLGLYLMMSSGILVVFGPQSPAFAFPLTGVIHGHGFFVPIENL 140 VL + L ++ T+GL +++ +G L+VFGP + GV+ +P+ L Sbjct: 84 VLVLKGFRGNELNGMISTIGLAMVLQNGALLVFGPDPQSMPPVAQGVVSLGPIVLPMSRL 143 Query: 141 VVLGVCIIGILSIYGLIYYTDFGRALRAMADDRAVATAQGLRPAILFPAAFALATGLAGL 200 V+ I ++ +Y + + GRALRA+ D +A+AQG+R +++P F + LA + Sbjct: 144 YVVAFSIAVLVLLYLFLMRSKGGRALRAVVQDTEIASAQGIRSHLMYPLGFGIGVALAAV 203 Query: 201 TGALVTPILSLAPHIGDPVLATSFLIVILGGLGSVGGATVAAFIVGMAEAFSAVYL 256 GAL+ P+ S++P IG L +F++VILGGLGS+ GA +A+ ++G+ E+ + ++ Sbjct: 204 AGALMAPVFSVSPSIGSTPLLKAFIVVILGGLGSIPGAALASLLLGVVESAANTFM 259 >ref|YP_002564903.1| inner-membrane translocator [Halorubrum lacusprofundi ATCC 49239] gb|ACM55833.1| inner-membrane translocator [Halorubrum lacusprofundi ATCC 49239] Length = 297 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 96/254 (37%), Positives = 152/254 (59%), Gaps = 11/254 (4%) Query: 5 VATSLIGISLGAQYALLALGFTLIFGILGVVNFAHGGFYVLGGYLAYSAVTYLGMPYALA 64 +A +IG+SLG++ L+A+G +LIFG+LGV+NFAHGGFY+LG Y+ + VT + + LA Sbjct: 12 IADVIIGLSLGSRLFLIAVGLSLIFGVLGVLNFAHGGFYMLGAYVTLAVVTNVVDNFWLA 71 Query: 65 VICAALGTTVLGFLFE----RFVLDRVIDDHLATLMLTLGLYLMMSSGILVVFGPQS--- 117 V+ AL V+G E R + DRV D L L++T G L++ + ++G S Sbjct: 72 VVAGALAVGVVGAAIEFAAIRPLYDRV-DADLDQLIVTFGFVLVIHEAVRFIWGSGSYSI 130 Query: 118 -PAFAFPLTGVIHGHGFFVPIENLVVLGVCIIGILSIYGLIYYTDFGRALRAMADDRAVA 176 P F + + G F LVV+G+ + ++S++ I T FG +R + DR +A Sbjct: 131 DPPDVFNFSVALGGSTF--SAYRLVVIGLAVAVLVSLWLFITRTYFGSLVRGTSSDREMA 188 Query: 177 TAQGLRPAILFPAAFALATGLAGLTGALVTPILSLAPHIGDPVLATSFLIVILGGLGSVG 236 + G+ L+ F L + LAGL GAL +P+ S +P +GD V+ +F++V++GGLGS+ Sbjct: 189 SMLGVDVPRLYTGVFFLGSVLAGLGGALSSPLQSTSPALGDQVIIDAFIVVVIGGLGSMS 248 Query: 237 GATVAAFIVGMAEA 250 GA V A ++GM ++ Sbjct: 249 GAFVGAMLIGMMQS 262