BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0120.0059.p (386 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773011.1| ABC transporter substrate-binding protein [Brad... 608 e-172 ref|YP_004487017.1| extracellular ligand-binding receptor [Delft... 413 e-113 ref|YP_785508.1| ABC transporter substrate-binding protein [Bord... 194 1e-47 ref|YP_004125025.1| extracellular ligand-binding receptor [Alicy... 177 3e-42 ref|YP_004387387.1| extracellular ligand-binding receptor [Alicy... 143 6e-32 >ref|NP_773011.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC51636.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] Length = 395 Score = 608 bits (1568), Expect = e-172, Method: Compositional matrix adjust. Identities = 310/387 (80%), Positives = 347/387 (89%), Gaps = 4/387 (1%) Query: 4 IAVGAALASSNVSVMAAG----QELTLGVVGVLSGPAAQWGLALRGAVELVAAEANRDGL 59 + GAA+A+ + +AG QEL +GVVGVLSGPAAQWGLAL+GAVE VAAEANRD L Sbjct: 9 VMAGAAMAALSTFAGSAGAAGTQELKIGVVGVLSGPAAQWGLALKGAVEFVAAEANRDDL 68 Query: 60 IKIDGAPCKVNVVAIDSKYTAEGAAAAANTLAGQGVKFIIGPIGSPELTGVKPIAKRNSM 119 IKIDGAPC+V+VVAIDSKYTAEG AAAAN LAGQGVKFIIG IGSPELTG+KPIAKRNSM Sbjct: 69 IKIDGAPCQVSVVAIDSKYTAEGGAAAANALAGQGVKFIIGAIGSPELTGLKPIAKRNSM 128 Query: 120 LVMGNGYAKDALSPQLPLVFHMGPGPSGWAEPIIKIAKQKFGMKSVVLVAPNDQGGTDIA 179 LV+ + YAKDA+ Q PLVFH+GPGPSGWA+PIIKIAKQKFGMKSVVLVAPNDQGGTDIA Sbjct: 129 LVLASSYAKDAIGAQWPLVFHVGPGPSGWADPIIKIAKQKFGMKSVVLVAPNDQGGTDIA 188 Query: 180 SVDADAYKRTGITASEEYYQRGTTNFAPIVTRIMNAKPDAVDLASSPPGDAGIIVKQLRQ 239 V+A+AYK+ GI A+EEYYQRGTTNFAP+VTRIMN KP+AVDLASSP GDAGI+VKQLRQ Sbjct: 189 PVEAEAYKKNGIAATEEYYQRGTTNFAPLVTRIMNQKPEAVDLASSPTGDAGILVKQLRQ 248 Query: 240 AGFEGPIGRLGGPGYTEISRVAGGDEVLKDFYWYEPVLIDEKVQMIADEYKKLLGADRPE 299 AGFEGPIGRLGGPGY+EISRVAGGD VLK+FYWYEP+++DEK QMIA++YKK++GADRPE Sbjct: 249 AGFEGPIGRLGGPGYSEISRVAGGDPVLKNFYWYEPIVVDEKAQMIAEDYKKMMGADRPE 308 Query: 300 NNLFFQWVSAARMVTKAIAKAGTISDTAKVAEALRSLPVEDPNIGPGHWIGQDFFGINQE 359 NNLFFQWVS RMV KAIAKAGT++DT KVAEALRSLPV DPNIG GHWIG++FFG+NQE Sbjct: 309 NNLFFQWVSGVRMVLKAIAKAGTVTDTEKVAEALRSLPVTDPNIGTGHWIGKEFFGVNQE 368 Query: 360 LSFPFGVGLVEKGKLQPTIRVEAAGGK 386 LSFPFGVGLV G+LQP RVEAA GK Sbjct: 369 LSFPFGVGLVTDGQLQPITRVEAATGK 395 >ref|YP_004487017.1| extracellular ligand-binding receptor [Delftia sp. Cs1-4] gb|AEF88662.1| Extracellular ligand-binding receptor [Delftia sp. Cs1-4] Length = 394 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 210/365 (57%), Positives = 258/365 (70%), Gaps = 1/365 (0%) Query: 10 LASSNVSVMAAGQELTLGVVGVLSGPAAQWGLALRGAVELVAAEANRDGLIKIDGAPCKV 69 LA+ +V+ A E LGV+G +SG AA WGLA++ VE AA+AN G ++ CKV Sbjct: 20 LATVSVAATAQECETKLGVLGPMSGGAAAWGLAMKAGVEFAAAQANEAGGVQAGNRKCKV 79 Query: 70 NVVAIDSKYTAEGAAAAANTLAGQGVKFIIGPIGSPELTGVKPIAKRNSMLVMGNGYAKD 129 +VV DSKYTA+GAAA AN LA Q VK I+GP+GSPE TGVKP+A+RN L + YAKD Sbjct: 80 SVVGYDSKYTADGAAAGANYLASQNVKLIVGPVGSPEATGVKPVAQRNGQLTFTSAYAKD 139 Query: 130 ALSPQLPLVFHMGPGPSGWAEPIIKIAKQKFGMKSVVLVAPNDQGGTDIASVDADAYKRT 189 A+ PQ PL FH GPS WA + K AK++F + S V+VAPNDQGGTD+ASV+A AYK Sbjct: 140 AIGPQWPLAFHQIAGPSAWAPVLTKAAKERFKISSAVVVAPNDQGGTDVASVNAQAYKAQ 199 Query: 190 GITASEEYYQRGTTNFAPIVTRIMNAKPDAVDLASSPPGDAGIIVKQLRQAGFEGPIGRL 249 G+ +EEYYQRGTTNFAPIVTRIMN +PDAVD ASSPP D IVKQL +AGF+G IGRL Sbjct: 200 GVKTTEEYYQRGTTNFAPIVTRIMNLRPDAVDTASSPPADGATIVKQLLEAGFDGVIGRL 259 Query: 250 GGPGYTEISRVAGGDEVLKDFYWYEPVLIDE-KVQMIADEYKKLLGADRPENNLFFQWVS 308 GGPG EI R AGG E +K FYW E V +D+ +V+ + ++Y++++ P+N L F + Sbjct: 260 GGPGTQEIIRAAGGVEKIKGFYWLELVAVDDPQVKSLLNDYQRVMKGPAPDNTLVFTAAA 319 Query: 309 AARMVTKAIAKAGTISDTAKVAEALRSLPVEDPNIGPGHWIGQDFFGINQELSFPFGVGL 368 AARMV KA+ AGT D KVA ALR LP DP +G G W G+ FGINQEL FP G+GL Sbjct: 320 AARMVLKAVTTAGTSDDAEKVAAALRQLPPTDPYLGQGVWTGKASFGINQELVFPVGMGL 379 Query: 369 VEKGK 373 V GK Sbjct: 380 VVGGK 384 >ref|YP_785508.1| ABC transporter substrate-binding protein [Bordetella avium 197N] emb|CAJ48593.1| ABC transporter, substrate-binding protein [Bordetella avium 197N] Length = 385 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 119/369 (32%), Positives = 192/369 (52%), Gaps = 15/369 (4%) Query: 22 QELTLGVVGVLSGPAAQWGLALRGAVELVAAEANRDGLIKIDGAPCKVNVVAIDSKYTAE 81 + L LGVVG ++GP A WGLA+ G V++ EAN+ G + + G KV V+ D Y A Sbjct: 23 ETLKLGVVGGMTGPGAPWGLAIDGGVKVAVEEANQAGGLDVAGKKYKVEVITYDDHYKAA 82 Query: 82 GAAAAANTLAGQ-GVKFIIGPIGSPELTGVKPIAKRNSMLVMGNGYAKDALSPQLPLVFH 140 A A N L Q VKFIIGPIGS + +KPI +RN +L++ N Y+ + L +F Sbjct: 83 DAVTAVNRLIDQDDVKFIIGPIGSASVMAMKPITERNKVLLLSNSYSTEILDANTRYLFR 142 Query: 141 MGPGPSGWAEPIIKIAKQKF-GMKSVVLVAPNDQGGTDIASVDADAYKRTGIT-ASEEYY 198 + P + +I K+ +K V +++PND G AY+ G T A +++ Sbjct: 143 VLPTTYEYNGQLIGWLKKNHPELKRVAILSPNDATGWSTQKTQKKAYEDAGYTVADAKFF 202 Query: 199 QRGTTNFAPIVTRIMNAKPDAVDLASSPPGDAGIIVKQLRQAGFEGPIGRLGGPGYTEIS 258 +R +F ++T I+ D ++L + PPG AGI+++Q R+ GF+G + GG E Sbjct: 203 ERSQNDFRTLLTSILAKNVDFIELDTVPPGPAGIVIRQAREMGFKGRFTKFGGNNVAETV 262 Query: 259 RVAGGDEVLKDFYWYEPVLIDEKVQMIADEYKKLLGA-----DRPENNLFFQWVSAARMV 313 + AG D E L+ + Y +L A ++ F + A R++ Sbjct: 263 KSAGADNA-------EGTLVYLSADPTSAPYARLSAAYGKYHSNSMDDFAFYFYDATRLL 315 Query: 314 TKAIAKAGTISDTAKVAEALRSLPVEDPNIGPGHWIGQDFFGINQELSFPFGVGLVEKGK 373 KAI +AGTI++TA V E + + P + G W G+D +G+N +++ P +G+++ GK Sbjct: 316 FKAIQEAGTITNTAAVVEKIEASPSFEGIQGSIVWGGKDVYGVNHQIATPAYLGVIKGGK 375 Query: 374 LQPTIRVEA 382 + + +A Sbjct: 376 AEVVEKFDA 384 >ref|YP_004125025.1| extracellular ligand-binding receptor [Alicycliphilus denitrificans BC] ref|YP_004386249.1| extracellular ligand-binding receptor [Alicycliphilus denitrificans K601] gb|ADU98137.1| Extracellular ligand-binding receptor [Alicycliphilus denitrificans BC] gb|AEB82733.1| Extracellular ligand-binding receptor [Alicycliphilus denitrificans K601] Length = 384 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 123/358 (34%), Positives = 185/358 (51%), Gaps = 8/358 (2%) Query: 20 AGQELTLGVVGVLSGPAAQWGLALRGAVELVAAEANRDGLIKIDGAPCKVNVVAIDSKYT 79 A +EL +G + LSG A WG A+ A EL A + N G + + G KV VVA D KY Sbjct: 18 AQEELKIGAIVTLSGAGAAWGQAMLYAAELAADDVNAKGGLDVGGRKYKVKVVAYDDKYQ 77 Query: 80 AEGAAAAANTLAGQG-VKFIIGPIGSPELTGVKPIAKRNSMLVMGNGYAKDALSPQLPLV 138 A A AAN L + VK++IGP+GS V PI ++N ++++ G+ AL+ P Sbjct: 78 AGEAVTAANRLVFEDKVKYVIGPVGSAAALAVGPIMEKNKVVMLTLGFTDKALAADKPFS 137 Query: 139 FHMGPGPSGWAEPIIKIAKQKFGMKSVVLVAPNDQGGTDIASVDADAYKRTGITAS-EEY 197 F ++P I + +K V + PND+ G IA AY + G + +E+ Sbjct: 138 FRPNLTTMETSQPQIDWIVKAKNIKKVGALFPNDETGQQIAQDLEKAYAKAGAQMNAKEF 197 Query: 198 YQRGTTNFAPIVTRIMNAKPDAVDLASSPPGDAGIIVKQLRQAGFEGPIGRLGGPGYTEI 257 ++R + P++TRIM DA++L + PG AG+IVKQ R+ GF+G I R GGP EI Sbjct: 198 FERERVDMMPLLTRIMAKGVDAIELDGNAPGTAGLIVKQARELGFKGHIIRSGGPATAEI 257 Query: 258 SRVAGGDEVLKDFYWYEPVL-IDEKVQMIADEYKKLLGADRPENNLFF-QWVSAARMVTK 315 VAG P+ + +V+ A+ Y G + N F + RM+ + Sbjct: 258 VNVAGTGAT-NGMLVNTPINPANAEVKAYAERY---FGKYKKRMNGFSPAFYDGTRMLFQ 313 Query: 316 AIAKAGTISDTAKVAEALRSLPVEDPNIGPGHWIGQDFFGINQELSFPFGVGLVEKGK 373 A+ +AGT +DT KV AL + +G +W G++ +G N ++S PF V V+ G+ Sbjct: 314 AMGQAGTATDTDKVRVALEGIKDFKGILGTLNWTGKEVYGSNHQISAPFYVARVQDGQ 371 >ref|YP_004387387.1| extracellular ligand-binding receptor [Alicycliphilus denitrificans K601] gb|AEB83871.1| Extracellular ligand-binding receptor [Alicycliphilus denitrificans K601] Length = 390 Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 113/366 (30%), Positives = 180/366 (49%), Gaps = 18/366 (4%) Query: 22 QELTLGVVGVLSGPAAQWGLALRGAVELVAAEANRDGLIKIDGAPCKVNVVAIDSKYTA- 80 + + LG+ LSG A WG A E N G +K+ G + V D+KY A Sbjct: 30 ETIKLGLSIPLSGSGANWGKGSEWMCAKAAQEVNAQGGVKVKGQAHQFECVGYDNKYNAA 89 Query: 81 EGAAAAANTLAGQGVKFIIGPIGSPELTGVKPIAKRNSMLVMGNGYAKDALSPQLPLVFH 140 EGA A +A VKF+ G IG ++ + +R ++L+ + P+ PL F Sbjct: 90 EGAKVAQALVARDEVKFVAGSIGVAPARALQSLTERRNVLLFTAAWGNSMKGPKFPLTFS 149 Query: 141 MGPGPSGWAEPII-KIAKQKFGMKSVVLVAPNDQGGTDIASVDADAYKRTGITA-SEEYY 198 P+ +EP+I + K G+K+VVL+ PND G + V A+++ G+ ++Y Sbjct: 150 QMNSPNEISEPLITHVKKLHPGVKTVVLLNPNDATGQETEKVAKAAWEKNGVKVLVSDWY 209 Query: 199 QRGTTNFAPIVTRIMNAKPDAVDLASSPPGDAGIIVKQLRQAGFEGPIGRLGGPGYTEIS 258 +RGT+ F PI ++ AKPD VDLAS+PP DAG+I K+L+ G+ G G G + Sbjct: 210 ERGTSEFQPIAAKLHAAKPDVVDLASTPPADAGLIFKELKALGWNGVKVVEVGTGADGL- 268 Query: 259 RVAGGDEVLKDFYWYEPVLIDEKV--QMIADE-YKKLLGADRPENNLFFQWVSAARMVTK 315 +A G + ++ Y V +D Q DE +K G N + + A + Sbjct: 269 -LATGKDAVEGAYLGAAVSVDSMTPQQKALDEGVRKATG--ESVNAIQIGFYDAVWAIKA 325 Query: 316 AIAKAGTISDTAKVAEALRSLPVEDPNIGPGHWIGQDFFGINQELSFP------FGVGLV 369 A+ KA +I D A+VA+A+ ++ + G + G+D +G +Q++ P G L Sbjct: 326 AMEKAQSI-DPAEVAKAMPTVRFKS-FYGETGFGGKDVYGSDQQMRLPVIITKLVGTSLQ 383 Query: 370 EKGKLQ 375 E G++Q Sbjct: 384 EVGRVQ 389