BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0120.0036.p         (111 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_07026103.1| protein of unknown function DUF1003 [Afipia s...   116   9e-25
ref|ZP_03628080.1| protein of unknown function DUF1003 [bacteriu...   115   2e-24
gb|ADI85515.1| membrane protein of unknown function DUF1003 [Geo...   111   4e-23
ref|NP_953807.1| hypothetical protein GSU2763 [Geobacter sulfurr...   111   4e-23
ref|YP_004042163.1| hypothetical protein Palpr_1029 [Paludibacte...   109   1e-22

>ref|ZP_07026103.1| protein of unknown function DUF1003 [Afipia sp. 1NLS2]
 gb|EFI53245.1| protein of unknown function DUF1003 [Afipia sp. 1NLS2]
          Length = 184

 Score =  116 bits (291), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 51/76 (67%), Positives = 61/76 (80%)

Query: 36  LTPGAMLADRVAETVGSWCFIIIQSVLLGIWIMLNMIAFIRHWDPFPFILLNLVLSFQAA 95
           LTPG  +AD VA  +GSW FII+QS +L +WI  N++  IR WDP+PFILLNL LSFQAA
Sbjct: 43  LTPGQRIADAVATVMGSWSFIIVQSAILVVWIAANLVGAIRGWDPYPFILLNLALSFQAA 102

Query: 96  YAAPIIMMSQNRQSEI 111
           YAAP+IMMSQNRQ +I
Sbjct: 103 YAAPVIMMSQNRQQDI 118


>ref|ZP_03628080.1| protein of unknown function DUF1003 [bacterium Ellin514]
 gb|EEF61477.1| protein of unknown function DUF1003 [bacterium Ellin514]
          Length = 175

 Score =  115 bits (289), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/71 (73%), Positives = 60/71 (84%)

Query: 37  TPGAMLADRVAETVGSWCFIIIQSVLLGIWIMLNMIAFIRHWDPFPFILLNLVLSFQAAY 96
           T G  +AD  A  VGSW FIIIQSVLL IW+ LN+IA+++HWDP+PFILLNL LSFQAAY
Sbjct: 30  TFGERVADGFAACVGSWTFIIIQSVLLAIWVCLNLIAWVKHWDPYPFILLNLALSFQAAY 89

Query: 97  AAPIIMMSQNR 107
           A+PIIMMSQNR
Sbjct: 90  ASPIIMMSQNR 100


>gb|ADI85515.1| membrane protein of unknown function DUF1003 [Geobacter
           sulfurreducens KN400]
          Length = 158

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 67/86 (77%), Gaps = 3/86 (3%)

Query: 27  PARNLPKLA---LTPGAMLADRVAETVGSWCFIIIQSVLLGIWIMLNMIAFIRHWDPFPF 83
           P +N+ ++    LT G   AD +A  VGSW FII QSVLL +W++LN+ A+IRHWDP+PF
Sbjct: 16  PVKNVNEVVRDQLTAGQRAADWIASRVGSWQFIIGQSVLLTVWVILNITAWIRHWDPYPF 75

Query: 84  ILLNLVLSFQAAYAAPIIMMSQNRQS 109
           IL+NLVLS QAAY AP+IMMSQNRQ+
Sbjct: 76  ILMNLVLSLQAAYTAPMIMMSQNRQA 101


>ref|NP_953807.1| hypothetical protein GSU2763 [Geobacter sulfurreducens PCA]
 gb|AAR36157.1| conserved hypothetical protein [Geobacter sulfurreducens PCA]
          Length = 158

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 53/86 (61%), Positives = 67/86 (77%), Gaps = 3/86 (3%)

Query: 27  PARNLPKLA---LTPGAMLADRVAETVGSWCFIIIQSVLLGIWIMLNMIAFIRHWDPFPF 83
           P +N+ ++    LT G   AD +A  VGSW FII QSVLL +W++LN+ A+IRHWDP+PF
Sbjct: 16  PVKNVNEVVRDQLTAGQRAADWIASRVGSWQFIIGQSVLLTVWVILNITAWIRHWDPYPF 75

Query: 84  ILLNLVLSFQAAYAAPIIMMSQNRQS 109
           IL+NLVLS QAAY AP+IMMSQNRQ+
Sbjct: 76  ILMNLVLSLQAAYTAPMIMMSQNRQA 101


>ref|YP_004042163.1| hypothetical protein Palpr_1029 [Paludibacter propionicigenes WB4]
 gb|ADQ79178.1| protein of unknown function DUF1003 [Paludibacter propionicigenes
           WB4]
          Length = 144

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/76 (65%), Positives = 63/76 (82%)

Query: 35  ALTPGAMLADRVAETVGSWCFIIIQSVLLGIWIMLNMIAFIRHWDPFPFILLNLVLSFQA 94
           +L+ G  +AD VA+ +GSW FIIIQ+VL+  W++LNMI F+ HWD +PFILLNL+ S QA
Sbjct: 14  SLSFGNRIADTVAKGMGSWNFIIIQTVLVVAWMILNMIGFVYHWDVYPFILLNLLFSTQA 73

Query: 95  AYAAPIIMMSQNRQSE 110
           AYAAPIIMMSQNRQ+E
Sbjct: 74  AYAAPIIMMSQNRQNE 89