BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0120.0009.p (565 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001990576.1| hypothetical protein Rpal_1569 [Rhodopseudom... 521 e-145 ref|ZP_06889551.1| hypothetical protein MettrDRAFT_3267 [Methylo... 249 1e-63 ref|YP_001990577.1| hypothetical protein Rpal_1570 [Rhodopseudom... 125 2e-26 ref|YP_352421.1| putative integrase/resolvase recombinase protei... 107 9e-21 ref|ZP_05087723.1| phage integrase [Pseudovibrio sp. JE062] >gi|... 98 3e-18 >ref|YP_001990576.1| hypothetical protein Rpal_1569 [Rhodopseudomonas palustris TIE-1] gb|ACF00101.1| hypothetical protein Rpal_1569 [Rhodopseudomonas palustris TIE-1] Length = 348 Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust. Identities = 243/347 (70%), Positives = 294/347 (84%), Gaps = 1/347 (0%) Query: 220 MDELTDAKWKQLDEALPDIPNRDNIPRRFAKTLFQRYKYAEETKWSQLERVTTTTIKSRY 279 M+++ A+W LDEAL DIP+ N+PR A +LF RYKYA++ W L R+T T+KSRY Sbjct: 1 MEQIGPAQWAALDEALSDIPHPTNVPRNHAHSLFARYKYAQDHGWDDLVRLTEKTLKSRY 60 Query: 280 WAGLYKFVDFAIAEKHYCGPRPKFVCIDPENLAPLPRDAFDDDELLTLLRLPLFTGCKNR 339 W GLYKF+D+AIAE+ Y G RPKF CIDPENLA LPRDAF+D+E+L +LRLPLFTGC NR Sbjct: 61 WYGLYKFIDWAIAERFYSGVRPKFECIDPENLASLPRDAFEDEEILRILRLPLFTGCLNR 120 Query: 340 VHVWQPGRYFVQSHIYWGFLICILTGMRPGEVGQLKCADIRTDGEFYYFDLRPFDARHGR 399 +VW+PG YFVQS IYWG+L+C+ TGMRPGEVGQL+CA IRTDG F+YFDLRPF+AR+GR Sbjct: 121 TNVWKPGAYFVQSAIYWGYLVCLFTGMRPGEVGQLECAQIRTDGTFFYFDLRPFEARNGR 180 Query: 400 VAVKDLRNLKTNAAGRVIPIHPLLIELGLLDRMQDLMDKQEERLFPEWDAYTRKDGTIRW 459 VA++DLRNLKTNAAGRVIPI+PLLIELGLLDRMQ+L D+ E+R+FPEW+ Y R+DGT+RW Sbjct: 181 VALQDLRNLKTNAAGRVIPINPLLIELGLLDRMQELSDQGEKRVFPEWEQYVRRDGTVRW 240 Query: 460 SQPLSKAWQYVKTK-LKLDRADLTLYSTRHLMADWLDNDAIAQRTRDRILGHASDVRGRY 518 SQPLSK+WQY+K K L RAD++LYSTRH AD LD+ +IAQRTRDRILGH DVRGRY Sbjct: 241 SQPLSKSWQYLKNKVLTGLRADVSLYSTRHFFADILDSHSIAQRTRDRILGHVGDVRGRY 300 Query: 519 GRKGILDPQIAAKIEALEPQVIKQMREILLAAKNRADAGELTMLKTY 565 GRKGILDP +AA+IE+LEP ++K REILL+AK +AD GELT+LKTY Sbjct: 301 GRKGILDPTVAAQIESLEPAIMKSAREILLSAKQKADRGELTILKTY 347 >ref|ZP_06889551.1| hypothetical protein MettrDRAFT_3267 [Methylosinus trichosporium OB3b] gb|EFH01946.1| hypothetical protein MettrDRAFT_3267 [Methylosinus trichosporium OB3b] Length = 566 Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 147/385 (38%), Positives = 218/385 (56%), Gaps = 10/385 (2%) Query: 179 MSDVLAEFLKPLDRKRKHTAKGRGEAEPVIQFAIDFLDNPRMDELTDAKWKQLDEALPDI 238 + D LA + +R + GR V++FA++FL + R+ E++ ++L++AL +I Sbjct: 184 IDDRLAALAQQYGDRRGDESHGR-----VLKFALEFLGDKRLAEISARDLRRLEQALTEI 238 Query: 239 PNRDNIPRRFAKTLFQRYKYAEETKWSQLERVTTTTIKSRYWAGLYKFVDFAIAEKHYCG 298 P R +IP K+L+ RY Y + L R+++TT+++ Y+ + F+ +A ++ + Sbjct: 239 PGRKDIPGEHRKSLYSRYLYGQLEGIDNLTRISSTTVENTYFGTMNAFLTWAKSKTDWTP 298 Query: 299 PRPKFVCIDPENLAPLPRDAFDDDELLTLLRLPLFTGCKNRVHVWQPGRYFVQSHIYWGF 358 P F + P RDAF DDEL+ LPLFTGC + H+WQPG+ FVQ+ +YWG+ Sbjct: 299 PAFIFNAKCEKLAEPQQRDAFRDDELMRFFGLPLFTGCASAAHIWQPGKCFVQNGLYWGY 358 Query: 359 LICILTGMRPGEVGQLKCADIRTDGEFYYFDLRPFDARHGRVAVKDLRNLKTNAAGRVIP 418 ++ I G+RP E+G+L+ ADI DGEF + D+R + K R LKT A R +P Sbjct: 359 ILHIFMGLRPSEIGKLRTADIVRDGEFQFIDMRRDKQESKKAKGKKTRKLKTENAYRRVP 418 Query: 419 IHPLLIELGLLDRMQDLMDKQEERLFPEWDAYTR-KDGTIRWSQPLSKAWQYVKTKLKLD 477 I L+++LGL+D L + E RLF +W Y + G W LSK+WQYV + + Sbjct: 419 IPNLVVDLGLIDLKVALEMRGETRLFLDWHVYRHPQSGREMWGHYLSKSWQYVARAHEFN 478 Query: 478 RADLTLYSTRHLMADWLDNDAIAQRTRDRILGHASD-VRGRYGRKGI-LDPQIAAKIEAL 535 R LTLYS RH +A W D + QR RDR+ GHA+ V G YG + LD AA L Sbjct: 479 RDFLTLYSGRHTLAGWYDAMKLPQRIRDRLFGHAAQGVPGNYGPIDLTLDEARAALGTEL 538 Query: 536 EPQVIKQMREILLAAKNRADAGELT 560 + Q + ILL AK +A+ GELT Sbjct: 539 KVQF--DIANILLTAKLKAEYGELT 561 >ref|YP_001990577.1| hypothetical protein Rpal_1570 [Rhodopseudomonas palustris TIE-1] gb|ACF00102.1| hypothetical protein Rpal_1570 [Rhodopseudomonas palustris TIE-1] Length = 266 Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 115/225 (51%), Gaps = 35/225 (15%) Query: 4 LGWVQELIAAPDLEALGTILDARLHAYVEHGVPANERLLAERCAFEHEVRRYLGRAQDRG 63 L W + +AAPDLEALG + D +L +VE G P ++R LA R EH++R ++ RA +RG Sbjct: 54 LDWANQAVAAPDLEALGRLFDQQLKRHVEEGEPRDDRTLAVRLGLEHQIRNFMLRANERG 113 Query: 64 YAYPQRFPRMPSTWVDFVNQNKAAESEIARLNVRRAYENGRHDAAEAVKEGWTAPAAPAV 123 + + + F W DFVNQNK AE+ + A + +T P V Sbjct: 114 FLFARLFEGFAYRWGDFVNQNKDAEANL----------------AARLPSAFTPAVLPVV 157 Query: 124 AQP----FDPIAMIDRLVQDAVAQRLPLLPAQKVGSISPVSEPAVCAPTGEAAE----DN 175 P D + I LVQ+ +A A++V S+ P+ T + E Sbjct: 158 GSPALGSVD-VGFIRNLVQEELA-------AKEVRSL-PIDTATTAVVTQQEGEPPIPSA 208 Query: 176 SC--RMSDVLAEFLKPLDRKRKHTAKGRGEAEPVIQFAIDFLDNP 218 SC RM+D+L +FL P DRKR KGR EA+P++QFAIDF P Sbjct: 209 SCPHRMADLLEKFLAPPDRKRARNFKGRPEAKPIVQFAIDFFQRP 253 >ref|YP_352421.1| putative integrase/resolvase recombinase protein phage-related integrase [Rhodobacter sphaeroides 2.4.1] gb|ABA78520.1| putative integrase/resolvase recombinase protein phage-related integrase [Rhodobacter sphaeroides 2.4.1] Length = 605 Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 81/272 (29%), Positives = 129/272 (47%), Gaps = 29/272 (10%) Query: 277 SRYWAGLYKFVDFAIAEKHYCGPRPKFVCIDPENLAPLPRD------AFDDDELLTLLRL 330 +RY + L F +A A ++ +P + LP++ F D++ TL R Sbjct: 337 NRYLSSLSAFCSWAEANG--------YIASNPCSGMALPKERGSKTLPFTSDQMNTLFRS 388 Query: 331 PLFTGCKNRV---HVWQPGRYFVQSHIYWGFLICILTGMRPGEVGQLKCADIRTDGEFYY 387 PLF GC++ ++ +PG ++ H YW LI + +G RPGE+ QL +D+R + + Sbjct: 389 PLFAGCESEAAWRYISKPGPVLIRDHRYWVPLIMLYSGARPGEIAQLATSDLRQEHGRWI 448 Query: 388 FDLRPFDARHGRVAVKDLRNLKTNAAGRVIPIHPLLIELGLLDRMQDLMDKQEERLFPEW 447 F + H ++ + +KT + RVIP+H LI LG L ++ ++RLFP Sbjct: 449 FHITTEGETH-----EEGKQVKTAGSMRVIPVHSELIRLGFLAYHSQRVEAGDKRLFPGA 503 Query: 448 DAYTRKDGTIRWSQPLSKAWQYVKTKLKLDRADLTLYSTRHLMADWLDNDAIAQRTRDRI 507 R +S+ K + LK R L+LYS RH AD L I Sbjct: 504 KRNERGQMMSEFSREFGK--YLARIGLKSGRG-LSLYSFRHGAADALRRAGYLDNEFGFI 560 Query: 508 LGHA-SDVRGRYG--RKGILDPQIAAKIEALE 536 LGH + GRYG +G+L+ ++ IEA++ Sbjct: 561 LGHTEGSMTGRYGIMPQGMLEQRVKL-IEAIQ 591 >ref|ZP_05087723.1| phage integrase [Pseudovibrio sp. JE062] gb|EEA91783.1| phage integrase [Pseudovibrio sp. JE062] Length = 404 Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 68/206 (33%), Positives = 100/206 (48%), Gaps = 15/206 (7%) Query: 316 RDAFDDDELLTLLRLPLFTGCKNRVHVWQPGRYFVQ-SHIYWGFLICILTGMRPGEVGQL 374 RD F +EL + PL+TGCK+ Q G + + YW LI + TG R GE+ QL Sbjct: 192 RDPFTSEELKAIFSAPLYTGCKSLRFWKQEGSLIPKDAGAYWVPLIGLYTGARLGEIIQL 251 Query: 375 KCADIRTDGEFYYFDLRPFDARHGRVAVKDLRNLKTNAAGRVIPIHPLLIELGLLDRMQD 434 DIR +YFD+ + + LKT ++ R IPIH LI+ GLLD + Sbjct: 252 YTTDIREQNGVWYFDINEDGSD---------KQLKTVSSKRQIPIHAELIKEGLLDLYKQ 302 Query: 435 LMDKQEERLFPEWDAYTRKDGTIRWSQPLSKAWQYVKTKLKLDRADLTLYSTRHLMADWL 494 ++++RLFP D +DG +S P SK ++ + + R +S RH D Sbjct: 303 RKAEKQQRLFP--DLKMGEDGY--YSSPFSKYFKRFLESVSVKRDKNAFHSFRHCFEDAC 358 Query: 495 DNDAIAQRTRDRILGHASD-VRGRYG 519 + I++ D + GH + GRYG Sbjct: 359 RHSDISKEIMDALQGHTEKGMAGRYG 384