BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0120.0006.p (242 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770454.1| transcriptional regulator [Bradyrhizobium japon... 265 6e-69 ref|YP_001237026.1| CRP/FNR family transcriptional regulator [Br... 251 6e-65 ref|YP_004134351.1| cyclic nucleotide-binding protein [Mesorhizo... 225 5e-57 ref|ZP_01228182.1| possible transcriptional regulatory protein [... 223 1e-56 ref|ZP_01438320.1| transcriptional regulatory protein [Fulvimari... 222 3e-56 >ref|NP_770454.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC49079.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 282 Score = 265 bits (676), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 121/240 (50%), Positives = 165/240 (68%) Query: 2 TSNIATSLITKLTASNRLDSDDIQALQQLPIQERQVPAQHIIVADGSRPKESCLLAEGFA 61 + I +L+ +L S+ + +D++ ++ LPI RQ PA+ +V DG R E CL+ EGF Sbjct: 42 SDTIRAALVRRLRVSSGISEEDVREIEALPIAVRQYPAETPVVRDGERATECCLIVEGFC 101 Query: 62 YRAKITQDGKRQVLSLHIPGEIPDLQSLYLNVMDHDFTTLTPCTLGFIPHEAIKALCKQR 121 R+K GKRQ+LSLHIPGEIPDL SL+L+VMDH+ +TLTPCTLGFI H+ ++ L ++R Sbjct: 102 ARSKTIASGKRQILSLHIPGEIPDLMSLFLHVMDHELSTLTPCTLGFISHDTLRRLHQRR 161 Query: 122 PNVTGALWRETLIDAAIFREWIVNVGRRSADERMAHLFAEIHRRLRAVGRTSDGDFNFPI 181 P V WR+TLIDAA+FREWIVNVG+R A R+AH+ E+ RLR +GR F P+ Sbjct: 162 PVVAEMFWRDTLIDAAMFREWIVNVGQRPAPARLAHVMIELRERLRVIGRVDGNTFEMPL 221 Query: 182 TQSDLGDCLGLSTVHVNRTLQELRQEGIMQVERPHYRILDHDKLEELAGFDPAYLHLEPT 241 TQ +G+ LG++ VH NR +++LRQEGI++ +R +LD K ELA FD YLH PT Sbjct: 222 TQEQIGEALGITAVHANRVIKQLRQEGIVEFQRGRVTVLDEQKFFELADFDGRYLHQSPT 281 >ref|YP_001237026.1| CRP/FNR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ33120.1| Putative transcriptional regulator protein, Fnr/CRP family [Bradyrhizobium sp. BTAi1] Length = 234 Score = 251 bits (642), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 117/232 (50%), Positives = 162/232 (69%) Query: 9 LITKLTASNRLDSDDIQALQQLPIQERQVPAQHIIVADGSRPKESCLLAEGFAYRAKITQ 68 ++ +L ++ L + Q++++LPI R++ IVA G RP CL+ +GF R+KI Sbjct: 1 MLKRLRLTSDLSPEVEQSIRRLPITIRRMEGGQTIVATGDRPAVCCLIVDGFVQRSKIVG 60 Query: 69 DGKRQVLSLHIPGEIPDLQSLYLNVMDHDFTTLTPCTLGFIPHEAIKALCKQRPNVTGAL 128 +G RQ+L+ H PG+IPDLQSLYL+V+DH+ TTL CTLGF+PH+ ++A+ + P+V AL Sbjct: 61 EGSRQILAFHQPGDIPDLQSLYLHVLDHEVTTLGDCTLGFVPHDPLRAVVRNNPDVAEAL 120 Query: 129 WRETLIDAAIFREWIVNVGRRSADERMAHLFAEIHRRLRAVGRTSDGDFNFPITQSDLGD 188 WR+TLIDAA+FREWI NVGRR A R+AHL E++ RL AVGR + F FP TQ L + Sbjct: 121 WRDTLIDAALFREWICNVGRREAASRLAHLVVEVYERLAAVGRVTGLSFKFPATQVVLAE 180 Query: 189 CLGLSTVHVNRTLQELRQEGIMQVERPHYRILDHDKLEELAGFDPAYLHLEP 240 +G STVH+NR LQELR +G++++ER I D + L A FDP YLHL+P Sbjct: 181 AIGTSTVHLNRVLQELRTKGLLEIERGAITIFDLEGLRHAADFDPLYLHLDP 232 >ref|YP_004134351.1| cyclic nucleotide-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gb|ADV15177.1| cyclic nucleotide-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 244 Score = 225 bits (573), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 112/229 (48%), Positives = 149/229 (65%) Query: 9 LITKLTASNRLDSDDIQALQQLPIQERQVPAQHIIVADGSRPKESCLLAEGFAYRAKITQ 68 LI KL + + L DI L+ + IQE+ A + +V +G RP S ++ +G K+T Sbjct: 10 LIRKLQSISDLREGDIDVLKDIQIQEKDFLANYDLVREGDRPVNSFVVLDGLLGSTKLTG 69 Query: 69 DGKRQVLSLHIPGEIPDLQSLYLNVMDHDFTTLTPCTLGFIPHEAIKALCKQRPNVTGAL 128 DGKRQ+ S + G+IPDL L+L+VMD +FTTLT LGF+ H+A++A+C+Q P + A Sbjct: 70 DGKRQITSFFVAGDIPDLHGLHLSVMDCNFTTLTAARLGFMRHDALRAICEQHPRIATAF 129 Query: 129 WRETLIDAAIFREWIVNVGRRSADERMAHLFAEIHRRLRAVGRTSDGDFNFPITQSDLGD 188 WR TLIDAAI+REW+ NVGRR A RMAH+ E+ RLR+VGR D + PITQ+ LGD Sbjct: 130 WRSTLIDAAIYREWVTNVGRREAYTRMAHILCELIFRLRSVGRIQDHVADLPITQAALGD 189 Query: 189 CLGLSTVHVNRTLQELRQEGIMQVERPHYRILDHDKLEELAGFDPAYLH 237 LGLSTVHVNR LQELR+ G++ P + LD L F+ YLH Sbjct: 190 ALGLSTVHVNRMLQELRRRGLIATTGPRVQALDWPGLTRAGDFETTYLH 238 >ref|ZP_01228182.1| possible transcriptional regulatory protein [Aurantimonas manganoxydans SI85-9A1] gb|EAS49358.1| possible transcriptional regulatory protein [Aurantimonas manganoxydans SI85-9A1] Length = 321 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 109/230 (47%), Positives = 145/230 (63%) Query: 9 LITKLTASNRLDSDDIQALQQLPIQERQVPAQHIIVADGSRPKESCLLAEGFAYRAKITQ 68 LIT+L L+ +D AL LPI R V A IV++G + C+L EGF YR + + Sbjct: 78 LITRLDMIADLNDEDRAALSALPIAVRDVAADTDIVSEGETVSQCCILIEGFTYRYRNIR 137 Query: 69 DGKRQVLSLHIPGEIPDLQSLYLNVMDHDFTTLTPCTLGFIPHEAIKALCKQRPNVTGAL 128 DG+RQ+++ ++PG+IPDL SL++ MDH F TP +GF+ H+A+ LC++RPNV AL Sbjct: 138 DGRRQIIAFNVPGDIPDLHSLHIRRMDHSFAATTPSRVGFVSHKAVWNLCRERPNVAAAL 197 Query: 129 WRETLIDAAIFREWIVNVGRRSADERMAHLFAEIHRRLRAVGRTSDGDFNFPITQSDLGD 188 W ETLID AIFREWIV +GR S R AHL E+ RLRAV D ++ P+TQ +L D Sbjct: 198 WLETLIDGAIFREWIVGLGRLSGKSRTAHLLCELAVRLRAVQLAPDLVYHLPLTQHELAD 257 Query: 189 CLGLSTVHVNRTLQELRQEGIMQVERPHYRILDHDKLEELAGFDPAYLHL 238 LGL+ V VNR LQEL+ E +++ ER I D + FDP YLH Sbjct: 258 ALGLTVVTVNRVLQELKAENLIERERSRMTIKDWSAFARVGDFDPKYLHF 307 >ref|ZP_01438320.1| transcriptional regulatory protein [Fulvimarina pelagi HTCC2506] gb|EAU43317.1| transcriptional regulatory protein [Fulvimarina pelagi HTCC2506] Length = 269 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 105/234 (44%), Positives = 150/234 (64%) Query: 5 IATSLITKLTASNRLDSDDIQALQQLPIQERQVPAQHIIVADGSRPKESCLLAEGFAYRA 64 +A +LI +L L+ DD +AL+ LPI + V A I +G CLL +GF +R Sbjct: 13 LARALIRRLDLVASLNEDDRKALEALPITAKTVQAGTDIAVEGEEINHCCLLLDGFTHRY 72 Query: 65 KITQDGKRQVLSLHIPGEIPDLQSLYLNVMDHDFTTLTPCTLGFIPHEAIKALCKQRPNV 124 + + GKRQ+ + H+ G+IPDL SL N +DH+F +G IPH+A+ LC +RPN+ Sbjct: 73 QFMRGGKRQITAFHVSGDIPDLHSLKFNSLDHNFAATVRSEIGLIPHDALWNLCMERPNI 132 Query: 125 TGALWRETLIDAAIFREWIVNVGRRSADERMAHLFAEIHRRLRAVGRTSDGDFNFPITQS 184 ALWRETLID +IFR+WIV +GR S +R AHL E+ RL+A+G ++ P+TQ+ Sbjct: 133 ASALWRETLIDGSIFRQWIVALGRMSGTQRTAHLLCELTMRLQAMGLGDGHRYHLPLTQN 192 Query: 185 DLGDCLGLSTVHVNRTLQELRQEGIMQVERPHYRILDHDKLEELAGFDPAYLHL 238 +L D LGL+ V VNRTLQ L+Q+G++ +R I+D +L E+A FDP+YLH Sbjct: 193 ELADALGLTVVTVNRTLQTLKQKGLVDRDRSWLTIMDWKRLSEIAEFDPSYLHF 246