BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0119.0032.p         (58 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_575736.1| tetratricopeptide TPR_2 [Nitrobacter hamburgens...    65   3e-09
ref|YP_316914.1| TPR repeat-containing protein [Nitrobacter wino...    63   1e-08
ref|ZP_01044501.1| TPR repeat protein [Nitrobacter sp. Nb-311A] ...    63   2e-08
ref|NP_768073.1| hypothetical protein blr1433 [Bradyrhizobium ja...    62   2e-08
ref|YP_782666.1| TPR repeat-containing protein [Rhodopseudomonas...    61   6e-08

>ref|YP_575736.1| tetratricopeptide TPR_2 [Nitrobacter hamburgensis X14]
 gb|ABE61276.1| Tetratricopeptide TPR_2 [Nitrobacter hamburgensis X14]
          Length = 269

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 38/57 (66%), Gaps = 1/57 (1%)

Query: 1  LGETAEATPAPADPRRDIATYHERVRANPKDTDAALKYARAMRATGQRAQAVAVRSR 57
          LG   EA PA  DP R    Y ER RANPKD D ALKY +A+RA GQRAQAVAV  R
Sbjct: 39 LGARTEANPA-TDPHRTAEVYGERFRANPKDPDVALKYGQALRAIGQRAQAVAVLER 94


>ref|YP_316914.1| TPR repeat-containing protein [Nitrobacter winogradskyi Nb-255]
 gb|ABA03562.1| TPR repeat protein [Nitrobacter winogradskyi Nb-255]
          Length = 290

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 36/55 (65%)

Query: 3   ETAEATPAPADPRRDIATYHERVRANPKDTDAALKYARAMRATGQRAQAVAVRSR 57
           ET     +  DP R +  Y ER RANPKD DAAL+Y  A+RA GQRAQAVAV  R
Sbjct: 48  ETKSEKHSGTDPHRTVEVYGERFRANPKDADAALRYGLALRAIGQRAQAVAVLER 102


>ref|ZP_01044501.1| TPR repeat protein [Nitrobacter sp. Nb-311A]
 gb|EAQ37282.1| TPR repeat protein [Nitrobacter sp. Nb-311A]
          Length = 264

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 34/46 (73%)

Query: 12 ADPRRDIATYHERVRANPKDTDAALKYARAMRATGQRAQAVAVRSR 57
          ADP R +  Y ER RANPKD +A LKY +A+RA GQRAQAVAV  R
Sbjct: 31 ADPHRAVEVYGERFRANPKDAEAGLKYGQALRAIGQRAQAVAVLER 76


>ref|NP_768073.1| hypothetical protein blr1433 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC46698.1| blr1433 [Bradyrhizobium japonicum USDA 110]
          Length = 271

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 39/54 (72%), Gaps = 1/54 (1%)

Query: 1  LGETAEATPAPADPRRDIATYHERVRANPKDTDAALKYARAMRATGQRAQAVAV 54
          +G  AEA+P P+DP   +  Y ER RANPKD +AAL Y +A+RA GQRAQA AV
Sbjct: 40 IGSRAEASP-PSDPAGAVEVYGERYRANPKDAEAALGYGQALRANGQRAQAAAV 92


>ref|YP_782666.1| TPR repeat-containing protein [Rhodopseudomonas palustris BisA53]
 gb|ABJ07686.1| Tetratricopeptide TPR_2 repeat protein [Rhodopseudomonas
          palustris BisA53]
          Length = 265

 Score = 60.8 bits (146), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 40/53 (75%), Gaps = 2/53 (3%)

Query: 2  GETAEATPAPADPRRDIATYHERVRANPKDTDAALKYARAMRATGQRAQAVAV 54
          G+ +EA  A  DPRR +  Y ER RANPK+ +AAL Y +A+RATGQRAQAVAV
Sbjct: 41 GKKSEA--AETDPRRAVDAYGERYRANPKNPEAALSYGQALRATGQRAQAVAV 91