BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0119.0029.p (414 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767304.1| CtpF protein [Bradyrhizobium japonicum USDA 110... 616 e-174 ref|YP_001242822.1| putative pilus assembly protein CpaE [Bradyr... 611 e-173 ref|YP_485401.1| pilus assembly protein cpaE [Rhodopseudomonas p... 611 e-173 ref|YP_004108019.1| putative pilus assembly protein CpaE [Rhodop... 610 e-172 ref|NP_949018.1| pilus assembly protein cpaE [Rhodopseudomonas p... 609 e-172 >ref|NP_767304.1| CtpF protein [Bradyrhizobium japonicum USDA 110] dbj|BAC45929.1| CtpF protein [Bradyrhizobium japonicum USDA 110] Length = 429 Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust. Identities = 289/399 (72%), Positives = 336/399 (84%) Query: 3 EQQDEPQHANDYIAPAPRISVQAFCASVATAANARAAADDRRLAKAHLSVHMGGIAAAID 62 E+ D P+H ++IAP PRISVQAFC + T A AA +DRRLAKAHL+ GG+AAAI+ Sbjct: 7 EETDHPRHPEEHIAPVPRISVQAFCETDQTLAAVTAAGEDRRLAKAHLTAKEGGLAAAIE 66 Query: 63 AYHKAPTPNVIMLETEPDHDFLAGLDELATVCDPGTRVVVLGTPGETAPYRELVRRGVND 122 Y PTPNVI++E++ D L GLD+LA VCDPGTRVVV+G P +TAPYRELVRRGVND Sbjct: 67 VYETMPTPNVIVIESDGTRDILEGLDDLAGVCDPGTRVVVIGNPNDTAPYRELVRRGVND 126 Query: 123 YVIGPVKVLDIVRSICSLFSASEAVSVGRLIAVAGAKGGVGASTIAHNVAWTIARDLGLD 182 YV+GPV+ +D+VRSICSLFSASEA+ GR+IAV GAKGGVGAST+AHNVAWTIARDL LD Sbjct: 127 YVVGPVETIDVVRSICSLFSASEAIITGRVIAVVGAKGGVGASTVAHNVAWTIARDLALD 186 Query: 183 SVVVDLDLAFGTAGLDYNQDPVQGIANAVFSPERPDSAFMERLLAKCGDHLSLLAAPATL 242 SVV+DLDLAFGTA LDYNQDPVQGIANAV S +RPD+A MERLLAKC + LSLLAAPATL Sbjct: 187 SVVIDLDLAFGTASLDYNQDPVQGIANAVLSQDRPDTALMERLLAKCTERLSLLAAPATL 246 Query: 243 DQVYDFGAEAFDAIFDTMRMTTSCIVLDVPHQWTAWTKRVLVGADDILIVAEPDLANMRN 302 D+VYDFGAEAFDA+FDT+RMTT CIVLDVPHQW+ WT+R L+ ADDI+IVAEPDLAN+RN Sbjct: 247 DRVYDFGAEAFDAVFDTLRMTTPCIVLDVPHQWSGWTRRALINADDIVIVAEPDLANLRN 306 Query: 303 TKNMMNLLRTARPNDRPPLYCLNQVGMSKRPEIEVKDFAKTIESQPIAAIPFDCRLFGEA 362 TKNM+ +L+TARPNDRPPLYC+NQVGM KR EI+VK FAKT+ESQPIA IPFD +LF A Sbjct: 307 TKNMLTVLKTARPNDRPPLYCINQVGMHKRAEIDVKSFAKTMESQPIAVIPFDSKLFSTA 366 Query: 363 ANNGQMIAEVSARHRTTRTFLQIAQRLTGRPDLAEARES 401 ANNGQMIAEVS HRTT F +A RL GR ++ + + S Sbjct: 367 ANNGQMIAEVSKSHRTTALFQNMANRLVGRGEVKKPKRS 405 >ref|YP_001242822.1| putative pilus assembly protein CpaE [Bradyrhizobium sp. BTAi1] gb|ABQ38916.1| putative pilus assembly protein cpaE [Bradyrhizobium sp. BTAi1] Length = 422 Score = 611 bits (1575), Expect = e-173, Method: Compositional matrix adjust. Identities = 296/408 (72%), Positives = 342/408 (83%), Gaps = 1/408 (0%) Query: 3 EQQDE-PQHANDYIAPAPRISVQAFCASVATAANARAAADDRRLAKAHLSVHMGGIAAAI 61 EQ D P A+D+IAPAPR+SVQAFC +V TAA +AA +DRRL KAHL V MGG+AAAI Sbjct: 11 EQPDVVPPPADDHIAPAPRVSVQAFCETVETAATVQAAGEDRRLGKAHLKVQMGGMAAAI 70 Query: 62 DAYHKAPTPNVIMLETEPDHDFLAGLDELATVCDPGTRVVVLGTPGETAPYRELVRRGVN 121 +AY APTPNVI+LET+ D LAGLD+LATVCDPGTRVVV+G + YRELVRRGV+ Sbjct: 71 EAYRSAPTPNVIILETDARSDILAGLDQLATVCDPGTRVVVIGRVNDVTLYRELVRRGVS 130 Query: 122 DYVIGPVKVLDIVRSICSLFSASEAVSVGRLIAVAGAKGGVGASTIAHNVAWTIARDLGL 181 DYV+ PV +D+VRSIC+LFSA EA +VGR+IAV GAKGGVGASTIAHNVAW IARDL + Sbjct: 131 DYVLSPVTPIDVVRSICNLFSAPEAKAVGRIIAVVGAKGGVGASTIAHNVAWAIARDLSM 190 Query: 182 DSVVVDLDLAFGTAGLDYNQDPVQGIANAVFSPERPDSAFMERLLAKCGDHLSLLAAPAT 241 DSVV DLDLAFGTAGLDYNQDP QGIA+AVFSP+R D AFM+RLL+KC DHLSLLAAPAT Sbjct: 191 DSVVADLDLAFGTAGLDYNQDPAQGIADAVFSPDRIDIAFMDRLLSKCTDHLSLLAAPAT 250 Query: 242 LDQVYDFGAEAFDAIFDTMRMTTSCIVLDVPHQWTAWTKRVLVGADDILIVAEPDLANMR 301 LD+VYDFG EAFDAIFDT+R + CIVLDVPHQW+ WTKR L+ ADDILIVA PDLA++R Sbjct: 251 LDRVYDFGVEAFDAIFDTLRASMPCIVLDVPHQWSGWTKRALISADDILIVAAPDLASLR 310 Query: 302 NTKNMMNLLRTARPNDRPPLYCLNQVGMSKRPEIEVKDFAKTIESQPIAAIPFDCRLFGE 361 NTKN+ +LL+ ARPNDR PLYCLNQVG+ KRPEI +FAK IESQPIA+IPF+ ++FG Sbjct: 311 NTKNIYDLLKAARPNDRMPLYCLNQVGVPKRPEINASEFAKAIESQPIASIPFEPQVFGA 370 Query: 362 AANNGQMIAEVSARHRTTRTFLQIAQRLTGRPDLAEARESFLSPILKK 409 AANNGQMIAE+S HRTT FLQIAQRLTGR + + + SFLSP+L K Sbjct: 371 AANNGQMIAEMSPNHRTTEMFLQIAQRLTGRSETKKPKGSFLSPLLDK 418 >ref|YP_485401.1| pilus assembly protein cpaE [Rhodopseudomonas palustris HaA2] gb|ABD06490.1| pilus assembly protein cpaE [Rhodopseudomonas palustris HaA2] Length = 425 Score = 611 bits (1575), Expect = e-173, Method: Compositional matrix adjust. Identities = 294/415 (70%), Positives = 341/415 (82%), Gaps = 8/415 (1%) Query: 3 EQQDEPQHA--------NDYIAPAPRISVQAFCASVATAANARAAADDRRLAKAHLSVHM 54 + QDEP +++IAPAPR+SVQAFC SV TAA ++A +DRRLAKAHL + M Sbjct: 7 QNQDEPADGAPIGAATPDEHIAPAPRVSVQAFCESVDTAAAVQSAGEDRRLAKAHLKIQM 66 Query: 55 GGIAAAIDAYHKAPTPNVIMLETEPDHDFLAGLDELATVCDPGTRVVVLGTPGETAPYRE 114 GG+ AAI+AY APTPNVI+LET+P D LAGLD+LATVCDPGTRV+V+G + YRE Sbjct: 67 GGMVAAIEAYRSAPTPNVIILETDPRSDILAGLDQLATVCDPGTRVIVIGKVNDVTLYRE 126 Query: 115 LVRRGVNDYVIGPVKVLDIVRSICSLFSASEAVSVGRLIAVAGAKGGVGASTIAHNVAWT 174 LVRRGV+DY I PV +DIVRSIC+LFSA EA +VGR+IAV GAKGGVGASTIAHN+AW Sbjct: 127 LVRRGVSDYAIAPVSPIDIVRSICNLFSAPEAKAVGRIIAVVGAKGGVGASTIAHNIAWA 186 Query: 175 IARDLGLDSVVVDLDLAFGTAGLDYNQDPVQGIANAVFSPERPDSAFMERLLAKCGDHLS 234 IARDL LDSVV DLDLAFGTAGLDYNQDP QGIA AVFSP+R D+AF++RLL+KC DHLS Sbjct: 187 IARDLALDSVVADLDLAFGTAGLDYNQDPPQGIAEAVFSPDRVDTAFVDRLLSKCTDHLS 246 Query: 235 LLAAPATLDQVYDFGAEAFDAIFDTMRMTTSCIVLDVPHQWTAWTKRVLVGADDILIVAE 294 LLAAPATLD+VYDFG EAFD IFDT+R T CIVLDVPHQWT WTKR L+ ADDILIVA Sbjct: 247 LLAAPATLDRVYDFGTEAFDTIFDTLRSTMPCIVLDVPHQWTGWTKRALINADDILIVAT 306 Query: 295 PDLANMRNTKNMMNLLRTARPNDRPPLYCLNQVGMSKRPEIEVKDFAKTIESQPIAAIPF 354 PDLAN+RNTKN+ +LL+ ARPNDRPPLYCLNQVG+ KRPEI +FAK IES PI +IPF Sbjct: 307 PDLANLRNTKNLYDLLKAARPNDRPPLYCLNQVGVPKRPEINSGEFAKAIESPPIVSIPF 366 Query: 355 DCRLFGEAANNGQMIAEVSARHRTTRTFLQIAQRLTGRPDLAEARESFLSPILKK 409 D ++FG AANNGQMIAE++A H+TT FLQIAQRLTGR + + + FLSPIL+K Sbjct: 367 DPQMFGAAANNGQMIAEIAASHKTTEMFLQIAQRLTGRGEAKKPKGGFLSPILEK 421 >ref|YP_004108019.1| putative pilus assembly protein CpaE [Rhodopseudomonas palustris DX-1] gb|ADU43286.1| putative pilus assembly protein CpaE [Rhodopseudomonas palustris DX-1] Length = 423 Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust. Identities = 292/413 (70%), Positives = 344/413 (83%), Gaps = 6/413 (1%) Query: 3 EQQDEPQHA------NDYIAPAPRISVQAFCASVATAANARAAADDRRLAKAHLSVHMGG 56 + QDE A +++IAPAPR+SVQAFC +V TA +AA +DRRLAKAHL + MGG Sbjct: 7 QNQDESATAAPDSGPDEHIAPAPRVSVQAFCETVETATAVQAAGEDRRLAKAHLKIQMGG 66 Query: 57 IAAAIDAYHKAPTPNVIMLETEPDHDFLAGLDELATVCDPGTRVVVLGTPGETAPYRELV 116 +AAAI+AY APTPNVI+LET+ D LAGLD+LATVCDPGTRV+V+G + YRELV Sbjct: 67 VAAAIEAYRSAPTPNVIVLETDARSDVLAGLDQLATVCDPGTRVIVIGKVNDVTLYRELV 126 Query: 117 RRGVNDYVIGPVKVLDIVRSICSLFSASEAVSVGRLIAVAGAKGGVGASTIAHNVAWTIA 176 RRGV+DY I PV+ +D+VRSIC+LFSA EA +VGR+IAV GAKGGVGAST+AHNVAW IA Sbjct: 127 RRGVSDYAIAPVQPIDVVRSICNLFSAPEAKAVGRIIAVVGAKGGVGASTVAHNVAWAIA 186 Query: 177 RDLGLDSVVVDLDLAFGTAGLDYNQDPVQGIANAVFSPERPDSAFMERLLAKCGDHLSLL 236 RDL LDSVV DLDLAFGTAGLDYNQDP QGIA AVFSP+R D+AF++RLL+KC DHLSLL Sbjct: 187 RDLALDSVVADLDLAFGTAGLDYNQDPPQGIAEAVFSPDRVDTAFVDRLLSKCTDHLSLL 246 Query: 237 AAPATLDQVYDFGAEAFDAIFDTMRMTTSCIVLDVPHQWTAWTKRVLVGADDILIVAEPD 296 AAPATLD+VYDFG EAFDAIFDT+R T CIVLDVPHQWT W KR L+ ADDILIVA PD Sbjct: 247 AAPATLDRVYDFGTEAFDAIFDTLRATMPCIVLDVPHQWTGWAKRSLITADDILIVATPD 306 Query: 297 LANMRNTKNMMNLLRTARPNDRPPLYCLNQVGMSKRPEIEVKDFAKTIESQPIAAIPFDC 356 LAN+RNTKN+++LL+ ARPNDRPPLYCLNQVG+ KRPEI +FAK IES PI +IPFD Sbjct: 307 LANLRNTKNLIDLLKAARPNDRPPLYCLNQVGVPKRPEISTAEFAKAIESPPIVSIPFDP 366 Query: 357 RLFGEAANNGQMIAEVSARHRTTRTFLQIAQRLTGRPDLAEARESFLSPILKK 409 ++FG AANNGQMIAE++A H+TT FLQIAQRLTGR + +++ SFL+PIL+K Sbjct: 367 QMFGAAANNGQMIAEIAANHKTTEMFLQIAQRLTGRGEAKKSKGSFLAPILEK 419 >ref|NP_949018.1| pilus assembly protein cpaE [Rhodopseudomonas palustris CGA009] emb|CAE29121.1| possible pilus assembly protein cpaE [Rhodopseudomonas palustris CGA009] Length = 423 Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust. Identities = 290/413 (70%), Positives = 344/413 (83%), Gaps = 6/413 (1%) Query: 3 EQQDEPQHA------NDYIAPAPRISVQAFCASVATAANARAAADDRRLAKAHLSVHMGG 56 + QDEP A ++IAPAPR+SVQAFC +V TAA +AA +DRRLAKAHL + MGG Sbjct: 7 QNQDEPATAAPDAGPEEHIAPAPRVSVQAFCETVETAAAVQAAGEDRRLAKAHLKIQMGG 66 Query: 57 IAAAIDAYHKAPTPNVIMLETEPDHDFLAGLDELATVCDPGTRVVVLGTPGETAPYRELV 116 + AAI+AY APTPNVI+LET+ D LAGLD+LATVCDPGTRV+V+G + YRELV Sbjct: 67 VVAAIEAYRSAPTPNVIVLETDARSDVLAGLDQLATVCDPGTRVIVIGKVNDVTLYRELV 126 Query: 117 RRGVNDYVIGPVKVLDIVRSICSLFSASEAVSVGRLIAVAGAKGGVGASTIAHNVAWTIA 176 RRGV+DY I PV+ +D+VRSIC+LFSA EA +VGR+IAV GAKGGVGAST+AHNVAW IA Sbjct: 127 RRGVSDYAIAPVQPIDVVRSICNLFSAPEAKAVGRIIAVVGAKGGVGASTVAHNVAWAIA 186 Query: 177 RDLGLDSVVVDLDLAFGTAGLDYNQDPVQGIANAVFSPERPDSAFMERLLAKCGDHLSLL 236 RDL LDSVV DLDLAFGTAGLDYNQDP QGIA AVF+P+R D+AF++RLL+KC DHLSLL Sbjct: 187 RDLALDSVVADLDLAFGTAGLDYNQDPPQGIAEAVFAPDRVDTAFVDRLLSKCTDHLSLL 246 Query: 237 AAPATLDQVYDFGAEAFDAIFDTMRMTTSCIVLDVPHQWTAWTKRVLVGADDILIVAEPD 296 AAPATLD+VYDFGA+AFD++FDT+R T CIVLDVPHQWT W KR L+ ADDILIVA PD Sbjct: 247 AAPATLDRVYDFGADAFDSVFDTLRTTMPCIVLDVPHQWTGWAKRSLITADDILIVATPD 306 Query: 297 LANMRNTKNMMNLLRTARPNDRPPLYCLNQVGMSKRPEIEVKDFAKTIESQPIAAIPFDC 356 LAN+RNTKN+++LL+ ARPNDRPPLYCLNQVG+ KRPEI +FAK IESQPI +IPF+ Sbjct: 307 LANLRNTKNLIDLLKGARPNDRPPLYCLNQVGVPKRPEISTNEFAKAIESQPIVSIPFEP 366 Query: 357 RLFGEAANNGQMIAEVSARHRTTRTFLQIAQRLTGRPDLAEARESFLSPILKK 409 ++FG AANNGQMIAE++A H+TT FLQIAQRLTGR + + + SFL PIL+K Sbjct: 367 QIFGAAANNGQMIAEIAANHKTTEMFLQIAQRLTGRGEAKKPKGSFLGPILEK 419