BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0119.0028.p (237 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001241543.1| putative pilus assembly protein CpaD [Bradyr... 298 4e-79 ref|YP_001207127.1| putative pilus assembly protein CpaD [Bradyr... 285 3e-75 ref|NP_767305.1| pilus assembly protein [Bradyrhizobium japonicu... 275 4e-72 ref|YP_533568.1| pilus assembly protein CpaD [Rhodopseudomonas p... 253 2e-65 ref|NP_768078.1| pilus assembly protein [Bradyrhizobium japonicu... 252 3e-65 >ref|YP_001241543.1| putative pilus assembly protein CpaD [Bradyrhizobium sp. BTAi1] gb|ABQ37637.1| Putative pilus assembly protein cpaD [Bradyrhizobium sp. BTAi1] Length = 247 Score = 298 bits (764), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 152/242 (62%), Positives = 177/242 (73%), Gaps = 9/242 (3%) Query: 4 NTQAGRARTLSLFGALVVSAIALGGCNLTSDVVTGTVPDDYX-----AVTEGEQSIVVFV 58 N + GR R + GA++ A+ LG CN T+ V T+PDDY AV EG QSIVVFV Sbjct: 7 NAENGR-RAMRRCGAIIGLALTLGACNATTGEVVATIPDDYKIRHPIAVEEGRQSIVVFV 65 Query: 59 GRARGNLTETQRDDVMGLARTWRREGTGAIAIDVPADSSNARSAQAVYQEIRGLLAS--X 116 G RG LT QR DV GLAR+W+REGTGAI +VPAD+ NAR+A Y+EI +L S Sbjct: 66 GSGRGGLTYQQRADVAGLARSWQREGTGAIVAEVPADTPNARAAADTYREIHAMLTSGGV 125 Query: 117 PAHAITKRPYL-DDPRALPTIRLSYPKMAAVAGPCGVWPSDLGPSIYNPSYNQNKQYDNF 175 P+ +IT R Y DDPR L +RLSYPK+AAVAGPCG+WP DLGP+I NPSY+ N+ Y NF Sbjct: 126 PSRSITLRHYTPDDPRLLAAVRLSYPKIAAVAGPCGLWPDDLGPNIDNPSYSNNQHYHNF 185 Query: 176 GCATQRNLAAMVANPSDLEQPRTETAAYTPRRSIAFDKYRKGESTATAYPEAEKAKLSDA 235 GCATQRNLAAM+ NP+DLEQPR E AAYTPRRS F+KYRKGESTA YPEAEKAKLSD Sbjct: 186 GCATQRNLAAMIDNPADLEQPRAEVAAYTPRRSALFEKYRKGESTAVTYPEAEKAKLSDT 245 Query: 236 AK 237 K Sbjct: 246 GK 247 >ref|YP_001207127.1| putative pilus assembly protein CpaD [Bradyrhizobium sp. ORS 278] emb|CAL78910.1| Putative pilus assembly protein cpaD [Bradyrhizobium sp. ORS 278] Length = 256 Score = 285 bits (730), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 143/217 (65%), Positives = 161/217 (74%), Gaps = 8/217 (3%) Query: 29 CNLTSDVVTGTVPDDYX-----AVTEGEQSIVVFVGRARGNLTETQRDDVMGLARTWRRE 83 CN TS V T+PDDY A+ EG QSIVVF+G RG LT QR DV GLAR+WRRE Sbjct: 40 CNSTSGEVVATIPDDYKMRHPIAIEEGRQSIVVFIGSGRGGLTMPQRADVAGLARSWRRE 99 Query: 84 GTGAIAIDVPADSSNARSAQAVYQEIRGLL--ASXPAHAITKR-PYLDDPRALPTIRLSY 140 GTGAI DVPA + NAR+AQ Y+EI +L P+ AIT R P DDPR L IRLSY Sbjct: 100 GTGAIVADVPAGTPNARAAQDAYREIHAMLTEGGVPSRAITMRHPTPDDPRQLAVIRLSY 159 Query: 141 PKMAAVAGPCGVWPSDLGPSIYNPSYNQNKQYDNFGCATQRNLAAMVANPSDLEQPRTET 200 PK+AAVAGPCG+W DLGP+I NP Y+ N+ Y NFGCATQRNLAAM+ NP+DLEQPR+ET Sbjct: 160 PKIAAVAGPCGLWQDDLGPNINNPGYSSNQHYQNFGCATQRNLAAMIDNPADLEQPRSET 219 Query: 201 AAYTPRRSIAFDKYRKGESTATAYPEAEKAKLSDAAK 237 AAYTPRRS F+KYRKGESTA YPE EKAKLSD K Sbjct: 220 AAYTPRRSALFEKYRKGESTAVTYPETEKAKLSDTGK 256 >ref|NP_767305.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] dbj|BAC45930.1| pilV [Bradyrhizobium japonicum USDA 110] Length = 244 Score = 275 bits (703), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 140/245 (57%), Positives = 175/245 (71%), Gaps = 9/245 (3%) Query: 1 MTRNTQAGRARTLSLFGALVVSAIALGGCNLTSDVVTGTVPDDY-----XAVTEGEQSIV 55 MT+ T A R R LS+ L ++ LG CN T ++VT TVP DY AV E ++SIV Sbjct: 1 MTK-TMADRRRGLSVALVLTGLSVMLGACNTTGEIVTQTVPTDYRQRHPIAVQEAKKSIV 59 Query: 56 VFVGRARGNLTETQRDDVMGLARTWRREGTGAIAIDVPADSSNARSAQAVYQEIRGLLAS 115 +FVG+ARG L+ Q+ DV G AR W REGTG++ +DVP S+N+R+A Y EIR +LAS Sbjct: 60 IFVGKARGGLSAAQQSDVAGTARDWVREGTGSVVVDVPIGSANSRAAATTYHEIRSVLAS 119 Query: 116 --XPAHAITKRPYL-DDPRALPTIRLSYPKMAAVAGPCGVWPSDLGPSIYNPSYNQNKQY 172 P+ AI + PY +DP LPTIRLSY ++AAVAGPCG+WP D+GPSI +P YN+N+ Y Sbjct: 120 GGVPSRAIVQHPYRPEDPGLLPTIRLSYSRIAAVAGPCGLWPEDVGPSILDPGYNENQPY 179 Query: 173 DNFGCATQRNLAAMVANPSDLEQPRTETAAYTPRRSIAFDKYRKGESTATAYPEAEKAKL 232 N GCA+QRNLAAM+ NP+DLEQPR ET YT RR IAFD+YRKG + AT PEA+KAKL Sbjct: 180 FNLGCASQRNLAAMIDNPADLEQPRAETPVYTARRDIAFDRYRKGAAIATPSPEADKAKL 239 Query: 233 SDAAK 237 SD K Sbjct: 240 SDTGK 244 >ref|YP_533568.1| pilus assembly protein CpaD [Rhodopseudomonas palustris BisB18] gb|ABD89249.1| pilus assembly protein CpaD [Rhodopseudomonas palustris BisB18] Length = 246 Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 136/246 (55%), Positives = 164/246 (66%), Gaps = 9/246 (3%) Query: 1 MTRNTQAGRARTLSLFGALVVSAIALGGCNLTSDVVTGT-VPDDY-----XAVTEGEQSI 54 MT A R L L GALV + LGGCN TSD VTG+ VPDDY A+ E +Q++ Sbjct: 1 MTSEYPADHLRRLRLGGALVAVCLVLGGCNHTSDEVTGSIVPDDYRQRHPIAIQEADQTL 60 Query: 55 VVFVGRARGNLTETQRDDVMGLARTWRREGTGAIAIDVPADSSNARSAQAVYQEIRGLLA 114 ++F G RG LT QR DV LA+TW REGTG I ID+P + NAR+A +EIR LLA Sbjct: 61 IIFAGTGRGGLTGAQRADVASLAQTWLREGTGPIVIDLPTHTPNARAAADSLREIRALLA 120 Query: 115 SX--PAHAITKRPYL-DDPRALPTIRLSYPKMAAVAGPCGVWPSDLGPSIYNPSYNQNKQ 171 + P +A+T R Y D R IR++YP++ A AGPCG+WP DLG S N Y +NK Sbjct: 121 AQGLPPNAVTVRDYQPRDTRQFAAIRVNYPRLTATAGPCGLWPDDLGSSSKNHDYFENKP 180 Query: 172 YDNFGCATQRNLAAMVANPSDLEQPRTETAAYTPRRSIAFDKYRKGESTATAYPEAEKAK 231 Y N GCA+QRNLAAMV NP+DL QPR ET AYT RR+ +F+KYRKG ST T YPEA+KAK Sbjct: 181 YWNLGCASQRNLAAMVDNPADLVQPRGETPAYTARRTNSFEKYRKGTSTTTTYPEADKAK 240 Query: 232 LSDAAK 237 LSD K Sbjct: 241 LSDTGK 246 >ref|NP_768078.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] dbj|BAC46703.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] Length = 244 Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 134/245 (54%), Positives = 163/245 (66%), Gaps = 9/245 (3%) Query: 1 MTRNTQAGRARTLSLFGALVVSAIALGGCNLTSDVVTGTVPDDYX-----AVTEGEQSIV 55 MT R + GALV +ALGGC + VT ++PD Y A+ E +SIV Sbjct: 1 MTTRPPQIRRGAIGFGGALVGIGLALGGCQ-HDEAVTASIPDSYKQRHPIAIEEQNRSIV 59 Query: 56 VFVGRARGNLTETQRDDVMGLARTWRREGTGAIAIDVPADSSNARSAQAVYQEIRGLLAS 115 VFVG ARG LT QR DVMGLA W EGTGAI ID P+ + NAR +EI+ +LA+ Sbjct: 60 VFVGHARGGLTAAQRADVMGLASAWLHEGTGAIHIDAPSGTPNARPVAESMREIQAMLAA 119 Query: 116 X--PAHAITKRPYL-DDPRALPTIRLSYPKMAAVAGPCGVWPSDLGPSIYNPSYNQNKQY 172 P I RPY +D R LP IRL+Y K+AAVAGPCG+WP D+GPS+ N + +NK+Y Sbjct: 120 AGVPPRGIIARPYQPEDKRFLPPIRLTYSKIAAVAGPCGLWPEDIGPSMKNKGWFENKEY 179 Query: 173 DNFGCATQRNLAAMVANPSDLEQPRTETAAYTPRRSIAFDKYRKGESTATAYPEAEKAKL 232 N+GCA QRNLAAMV NPSDLEQPR ET +YT RR+ AF+KYRKG TA +YPEA++AKL Sbjct: 180 YNYGCAYQRNLAAMVDNPSDLEQPRPETPSYTTRRTAAFEKYRKGVPTAVSYPEADRAKL 239 Query: 233 SDAAK 237 SD K Sbjct: 240 SDTGK 244