BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0119.0026.p (266 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001241541.1| putative pilus assembly protein CpaB [Bradyr... 362 4e-98 ref|YP_001207125.1| putative pilus assembly protein CpaB [Bradyr... 360 2e-97 ref|YP_001203172.1| putative pilus assembly protein CpaB [Bradyr... 360 2e-97 ref|YP_001242819.1| putative pilus assembly protein CpaB [Bradyr... 351 7e-95 ref|YP_533566.1| Flp pilus assembly CpaB [Rhodopseudomonas palus... 341 5e-92 >ref|YP_001241541.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. BTAi1] gb|ABQ37635.1| Putative pilus assembly protein cpaB [Bradyrhizobium sp. BTAi1] Length = 266 Score = 362 bits (929), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 189/268 (70%), Positives = 222/268 (82%), Gaps = 4/268 (1%) Query: 1 MKTARIVVLGIAGVAGLAAMYLASVGD-RKPAPVAPPVAQLPTVEVLVAKSDIGLGQSVK 59 M TARIVVL IA AG A YL S + ++P VAP VAQLPTVEVLVAK+DIGLGQ++K Sbjct: 1 MMTARIVVLTIALGAGGVAAYLVSTSESQQPVAVAP-VAQLPTVEVLVAKNDIGLGQAIK 59 Query: 60 AEDIQWQRWPAETASSAFIRHDANANAMNDVIGSIARAPFIVGEPIREQKLVKANGSGFM 119 D+ WQ WP E AS+ FIR A N ++G+IARAPF++GEPIREQKLVK++GSGFM Sbjct: 60 PGDLVWQTWP-EAASNIFIRRGDRPEAANQLVGTIARAPFVIGEPIREQKLVKSDGSGFM 118 Query: 120 AAILPSGMRAISTEISPETGAGGFILPNDRVDVILSRRDKNPDQQGGRDIVTTEILLSNV 179 AAILP+GMRAISTEISPETGAGGFILPNDRVDVILS+RDKNPD+ GG D V++EI+LSNV Sbjct: 119 AAILPAGMRAISTEISPETGAGGFILPNDRVDVILSKRDKNPDKPGGPDYVSSEIILSNV 178 Query: 180 RVLAIDQAPKEKDGNNSLVGKTVTLELKPEQAETLARARQSGTLALALRSIADVN-EQTD 238 RVLAIDQAPKEK+G N++VGKTVTLELKPEQAETLARARQSG+LALALRSIADVN + Sbjct: 179 RVLAIDQAPKEKEGQNTVVGKTVTLELKPEQAETLARARQSGSLALALRSIADVNAADGN 238 Query: 239 ETRDHAPKRGESIKVVRFGIPSSLTTQK 266 + +RG +I+++R+GI SSLT QK Sbjct: 239 KNETQMARRGNAIEIIRYGITSSLTAQK 266 >ref|YP_001207125.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. ORS 278] emb|CAL78908.1| Putative pilus assembly protein cpaB [Bradyrhizobium sp. ORS 278] Length = 269 Score = 360 bits (923), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 185/271 (68%), Positives = 223/271 (82%), Gaps = 7/271 (2%) Query: 1 MKTARIVVLGIA-GVAGLAAMYLASVGDRKPAPVAPPVAQLPTVEVLVAKSDIGLGQSVK 59 M TARIVVL IA G G+AA ++S ++PAPVAP VAQLPTVEVLVAK+DIGLGQ++K Sbjct: 1 MMTARIVVLTIALGAGGVAAYLVSSSESQQPAPVAP-VAQLPTVEVLVAKADIGLGQAIK 59 Query: 60 AEDIQWQRWPAETASSAFIRHDANANAMNDVIGSIARAPFIVGEPIREQKLVKANGSGFM 119 D+ WQ WP E AS+ FIR A ++GSIARAPF++GEPIREQKLVK++GSGFM Sbjct: 60 PGDLIWQTWP-EAASNIFIRRGDRPEAATQLVGSIARAPFVIGEPIREQKLVKSDGSGFM 118 Query: 120 AAILPSGMRAISTEISPETGAGGFILPNDRVDVILSRRDKNPDQQGGRDIVTTEILLSNV 179 AAILP+GMRAISTEISPETGAGGFILPNDRVDVILSRR+KNPD+ D + +EI+LSNV Sbjct: 119 AAILPAGMRAISTEISPETGAGGFILPNDRVDVILSRREKNPDKPAAADSIVSEIILSNV 178 Query: 180 RVLAIDQAPKEKDGNNSLVGKTVTLELKPEQAETLARARQSGTLALALRSIADVNE---- 235 RVLAIDQAPKEK+G N++VGKTVTLELKPEQAETL+RARQ+GTLALALRSIAD+N Sbjct: 179 RVLAIDQAPKEKEGQNTVVGKTVTLELKPEQAETLSRARQAGTLALALRSIADINAPDTG 238 Query: 236 QTDETRDHAPKRGESIKVVRFGIPSSLTTQK 266 +T+ + +RG +I+++R+G+ SSLT QK Sbjct: 239 KTETEQQQMARRGNAIEIIRYGVTSSLTAQK 269 >ref|YP_001203172.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. ORS 278] emb|CAL74935.1| Putative pilus assembly protein, cpaB [Bradyrhizobium sp. ORS 278] Length = 248 Score = 360 bits (923), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 177/248 (71%), Positives = 211/248 (85%), Gaps = 1/248 (0%) Query: 19 AMYLASVGDRKPAPVAPPVAQLPTVEVLVAKSDIGLGQSVKAEDIQWQRWPAETASSAFI 78 A YLAS D + A VA P Q+PTV+VLVAK+DIGLGQS+K E +QWQ WPA TASS+FI Sbjct: 2 AAYLASGSDDRQAQVAAPAPQVPTVDVLVAKADIGLGQSIKPELLQWQSWPASTASSSFI 61 Query: 79 RHDANANAMNDVIGSIARAPFIVGEPIREQKLVKANGSGFMAAILPSGMRAISTEISPET 138 R + N+V G+IARAPFI GEPIREQKLVK++GSGFMAAILP+GMRA+STEISPET Sbjct: 62 RRNERPEGQNEVTGTIARAPFIAGEPIREQKLVKSDGSGFMAAILPAGMRAVSTEISPET 121 Query: 139 GAGGFILPNDRVDVILSRRDKNPDQQGGRDIVTTEILLSNVRVLAIDQAPKEKDGNNSLV 198 GAGGFILPNDRVDVILS+R++NPDQ D+V++EI+L+N+RVLAIDQAPKEKDG ++V Sbjct: 122 GAGGFILPNDRVDVILSKRERNPDQPNAGDVVSSEIILANIRVLAIDQAPKEKDGQTTVV 181 Query: 199 GKTVTLELKPEQAETLARARQSGTLALALRSIADVNEQTDETRDHAPKRGESIKVVRFGI 258 GKTVTLELKPEQAETLARARQ+GTL+LALRSIADVN ++ D +RG+S+ VVRFGI Sbjct: 182 GKTVTLELKPEQAETLARARQTGTLSLALRSIADVN-MAEQRSDDNRRRGDSVAVVRFGI 240 Query: 259 PSSLTTQK 266 PS++TTQK Sbjct: 241 PSTMTTQK 248 >ref|YP_001242819.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. BTAi1] gb|ABQ38913.1| Putative pilus assembly protein, cpaB [Bradyrhizobium sp. BTAi1] Length = 249 Score = 351 bits (900), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 171/248 (68%), Positives = 208/248 (83%) Query: 19 AMYLASVGDRKPAPVAPPVAQLPTVEVLVAKSDIGLGQSVKAEDIQWQRWPAETASSAFI 78 A YLAS D +PAPVA + TVEVLVAKSDI LGQS+K E +QWQ WPA T SS+FI Sbjct: 2 AAYLASGSDDRPAPVAAVAPTVETVEVLVAKSDINLGQSLKPEHLQWQSWPAATTSSSFI 61 Query: 79 RHDANANAMNDVIGSIARAPFIVGEPIREQKLVKANGSGFMAAILPSGMRAISTEISPET 138 + + +V G IARAPFI GEPIREQKLVKA+GSGFMAAILP+GMRA+STEISPET Sbjct: 62 QRKDRSKGDAEVTGMIARAPFIAGEPIREQKLVKADGSGFMAAILPAGMRAVSTEISPET 121 Query: 139 GAGGFILPNDRVDVILSRRDKNPDQQGGRDIVTTEILLSNVRVLAIDQAPKEKDGNNSLV 198 GAGGFILPNDRVDV+LS+R++NP+Q D++++EI+LSN+RVLAIDQAPKEKDG ++V Sbjct: 122 GAGGFILPNDRVDVLLSKRERNPEQPNAGDVISSEIILSNIRVLAIDQAPKEKDGQTTVV 181 Query: 199 GKTVTLELKPEQAETLARARQSGTLALALRSIADVNEQTDETRDHAPKRGESIKVVRFGI 258 GKTVTLELKPEQAETLARARQSGTL+LALRSIAD+N + + +++ +RG+S+ V+RFGI Sbjct: 182 GKTVTLELKPEQAETLARARQSGTLSLALRSIADINVAENRSDENSRRRGDSVAVIRFGI 241 Query: 259 PSSLTTQK 266 PS++TTQK Sbjct: 242 PSTMTTQK 249 >ref|YP_533566.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisB18] gb|ABD89247.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisB18] Length = 265 Score = 341 bits (875), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 178/266 (66%), Positives = 208/266 (78%), Gaps = 1/266 (0%) Query: 1 MKTARIVVLGIAGVAGLAAMYLASVGDRKPAPVAPPVAQLPTVEVLVAKSDIGLGQSVKA 60 M TARIVVL IA AG A YLAS D++P P AP VAQLPTV+VLVAKSDI LGQ++ Sbjct: 1 MNTARIVVLTIAVGAGGVAAYLASGADQQPPPAAP-VAQLPTVDVLVAKSDIPLGQALTP 59 Query: 61 EDIQWQRWPAETASSAFIRHDANANAMNDVIGSIARAPFIVGEPIREQKLVKANGSGFMA 120 D+QWQ WPA TAS FIR + +A ++GSIAR+ FI GEPIR+ KLVKANGSGFMA Sbjct: 60 GDVQWQVWPAATASEMFIRRNVRPDATTQIVGSIARSAFIAGEPIRDLKLVKANGSGFMA 119 Query: 121 AILPSGMRAISTEISPETGAGGFILPNDRVDVILSRRDKNPDQQGGRDIVTTEILLSNVR 180 AILPSGMRA+STEISPETGAGGFILPNDRVDVILS+R+KNPD + D V +EI+LSN+R Sbjct: 120 AILPSGMRAVSTEISPETGAGGFILPNDRVDVILSKREKNPDARASGDGVNSEIILSNIR 179 Query: 181 VLAIDQAPKEKDGNNSLVGKTVTLELKPEQAETLARARQSGTLALALRSIADVNEQTDET 240 VLAIDQ +EK+G +VGKT TLELKPEQ+E LARARQSGTL+LALRS+AD N +T Sbjct: 180 VLAIDQTIEEKNGQKVVVGKTATLELKPEQSEGLARARQSGTLSLALRSLADANSAVADT 239 Query: 241 RDHAPKRGESIKVVRFGIPSSLTTQK 266 D + +SI VVRFG+ + TTQK Sbjct: 240 PDDRSAKRDSINVVRFGVSTPTTTQK 265