BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0119.0020.p (757 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771088.1| amino acid ABC transporter permease protein [Br... 634 e-179 ref|YP_001205896.1| putative amino acid ABC transport, permease ... 618 e-174 ref|YP_001239901.1| putative amino acid ABC transporter permease... 616 e-174 ref|YP_577326.1| amino acid ABC transporter permease [Nitrobacte... 595 e-168 ref|YP_532420.1| amino acid ABC transporter permease [Rhodopseud... 592 e-167 >ref|NP_771088.1| amino acid ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC49713.1| amino acid ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 506 Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust. Identities = 358/442 (80%), Positives = 393/442 (88%) Query: 1 MTDVTASSFVRQDLVPERRAPVKTTGLVGFIRTRLLNSPTNILLTILALGLLWYTIVPAF 60 MTD+T+SSFVRQDL+ ER APVKTTG VG +RTRL NSPTNILLTI+ LLW+TI+P+ Sbjct: 1 MTDITSSSFVRQDLLTERPAPVKTTGFVGLMRTRLFNSPTNILLTIVGALLLWFTIIPSV 60 Query: 61 RFLLVDAVWSGKDRNACLAETAGRQVGACWPYIQAKLTQLIYGFYPEAERWRVNLTFVLA 120 RFL+VDAVW+GKDR ACLAE AG VGACWPYIQAKL QLIYGFYPEAERWRVNLT +LA Sbjct: 61 RFLMVDAVWAGKDRTACLAENAGFAVGACWPYIQAKLPQLIYGFYPEAERWRVNLTLILA 120 Query: 121 AVLLLPLLIPRLPTKGLNAGLFFFAFPAVAFFLLRGGGLAGFGVSWVASLLQLFDDSIVN 180 AVLL+PLL+PRLP+KGLNAGLFFFAFP VAFFLLRGGG+ GFG+SW A LLQLFDDSI+ Sbjct: 121 AVLLVPLLVPRLPSKGLNAGLFFFAFPVVAFFLLRGGGITGFGLSWTAGLLQLFDDSIIG 180 Query: 181 AGQVLVNLSRNSAIGPLLWAVGKIIVLVGSLIGWLIFPLTSLREQLQMSSQPLWFDFLLT 240 AGQ L+NLS+ SAI PLLW VG ++VLVG+ I WLIFPLT LR+QLQ + Q +W DF +T Sbjct: 181 AGQALLNLSKTSAIAPLLWVVGNLVVLVGTAIYWLIFPLTWLRDQLQGTGQSVWVDFAIT 240 Query: 241 TAIVSLILFFLGGGMRTGQRALLGSLASFAGIAIVIKLMGLDRGGLPIVDTRLWGGLLVT 300 IVSLI F LGGG+R G RAL S+A+F IAIVIKLMGLD GGLP+V+T LWGGLLVT Sbjct: 241 AVIVSLIAFLLGGGVRAGWRALASSIATFVAIAIVIKLMGLDHGGLPVVETSLWGGLLVT 300 Query: 301 LVVSVTGIVTSMPIGIALALGRRSTIPLIRIFSIAFIEFWRGVPLITVLFFATYMLPLFL 360 LVVSVTGIVTS+PIGIALALGRRSTIPLIRIFSIAFIEFWRGVPLITVLFFATYMLPLFL Sbjct: 301 LVVSVTGIVTSLPIGIALALGRRSTIPLIRIFSIAFIEFWRGVPLITVLFFATYMLPLFL 360 Query: 361 PGNFNVDGLVRALIGIALFAGAYQAEVVRGGLAAIPRGQGEAASALGLSWWKTTSLIVMP 420 PGNF VDGLVRALIGIALF GAYQAE VRGGLAAIPRGQGEAA+ALGLSWWKTTSLIV+P Sbjct: 361 PGNFTVDGLVRALIGIALFTGAYQAENVRGGLAAIPRGQGEAAAALGLSWWKTTSLIVLP 420 Query: 421 QALRHVIPGLVNSFIALFKDTS 442 QALRHVIP LVNSFI+LFKDTS Sbjct: 421 QALRHVIPNLVNSFISLFKDTS 442 >ref|YP_001205896.1| putative amino acid ABC transport, permease [Bradyrhizobium sp. ORS 278] emb|CAL77671.1| putative amino acid ABC transport, permease protein [Bradyrhizobium sp. ORS 278] Length = 506 Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust. Identities = 307/443 (69%), Positives = 369/443 (83%), Gaps = 2/443 (0%) Query: 1 MTDVTASSFVRQDLVPERRAPVKTTGLVGFIRTRLLNSPTNILLTILALGLLWYTIVPAF 60 MTD+TAS+F+RQD+ ER AP+KTTG++GF+RT+LLNSPTNILLT+++ L+W+T++PA Sbjct: 1 MTDITASNFIRQDMAGERPAPIKTTGVIGFVRTQLLNSPTNILLTLVSALLIWFTVIPAL 60 Query: 61 RFLLVDAVWSGKDRNACLAETAGRQVGACWPYIQAKLTQLIYGFYPEAERWRVNLTFVLA 120 +FLLVDAVW GKDR ACLA+ AG VGACWPYI AK +Q +YGFYPEA+RWRVNLT+VL Sbjct: 61 QFLLVDAVWVGKDREACLAQNAGHPVGACWPYITAKFSQFMYGFYPEAQRWRVNLTYVLF 120 Query: 121 AVLLLPLLIPRLPTKGLNAGLFFFAFPAVAFFLLRGGGLAGFGVSWVASLLQLFDDSIVN 180 LL PL+I +P K LNAGLF A P VAFFLL GGGL+GFGVSW AS+L LF +S+ + Sbjct: 121 VALLAPLMIRSVPAKTLNAGLFLVALPVVAFFLLYGGGLSGFGVSWTASVLSLFAESVDS 180 Query: 181 AGQVLVNLSRN-SAIGPLLWAVGKIIVLVGSLIGWLIFPLTSLREQLQMSSQPLWFDFLL 239 AG LV IG L W +GK++VL+G++ +I+PL LR+QLQ S QP+W D ++ Sbjct: 181 AGNALVRSGAGVPVIGMLFWLMGKLVVLIGTVASLVIWPLLWLRDQLQASQQPVWTDLVI 240 Query: 240 TTAIVSLILFFLGGGMRTGQRALLGSLASFAGIAIVIKLMGLDRGGLPIVDTRLWGGLLV 299 T VS ++F +GGG R R+++G++A+F GIA+VI +MGLDRGGLP+VDTRLWGG+LV Sbjct: 241 TAVAVSALVFVIGGGSR-ALRSVIGTIATFVGIAVVIAVMGLDRGGLPVVDTRLWGGMLV 299 Query: 300 TLVVSVTGIVTSMPIGIALALGRRSTIPLIRIFSIAFIEFWRGVPLITVLFFATYMLPLF 359 TLVV+V GIV SMPIGIALALGRRSTIPLIRIFSIAFIE RGVPLITVLFFATYMLPLF Sbjct: 300 TLVVTVIGIVASMPIGIALALGRRSTIPLIRIFSIAFIELVRGVPLITVLFFATYMLPLF 359 Query: 360 LPGNFNVDGLVRALIGIALFAGAYQAEVVRGGLAAIPRGQGEAASALGLSWWKTTSLIVM 419 LPGN +DGLVRALIG+ALF+GAY AEV+RGGL AIPRGQ EAASALGLSWWKTTS IV+ Sbjct: 360 LPGNLRIDGLVRALIGVALFSGAYMAEVIRGGLQAIPRGQAEAASALGLSWWKTTSFIVL 419 Query: 420 PQALRHVIPGLVNSFIALFKDTS 442 PQALRHVIPG+VNSFI+LFKDTS Sbjct: 420 PQALRHVIPGIVNSFISLFKDTS 442 >ref|YP_001239901.1| putative amino acid ABC transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ35995.1| amino acid ABC transporter membrane protein 2, PAAT family [Bradyrhizobium sp. BTAi1] Length = 506 Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust. Identities = 315/443 (71%), Positives = 370/443 (83%), Gaps = 2/443 (0%) Query: 1 MTDVTASSFVRQDLVPERRAPVKTTGLVGFIRTRLLNSPTNILLTILALGLLWYTIVPAF 60 MTD+TAS+F+RQD+ ER APVKTTG GF+RTRLLNSPTNILLT+++ L+W+T++PA Sbjct: 1 MTDITASTFIRQDMAGERPAPVKTTGFTGFVRTRLLNSPTNILLTLVSALLIWFTVIPAL 60 Query: 61 RFLLVDAVWSGKDRNACLAETAGRQVGACWPYIQAKLTQLIYGFYPEAERWRVNLTFVLA 120 +FLLVDAVW GKDR ACL + G VGACWPY+ AK Q +YGFYP+AERWRVNLT+ LA Sbjct: 61 KFLLVDAVWVGKDREACLEQNVGHAVGACWPYVTAKFGQFMYGFYPDAERWRVNLTYGLA 120 Query: 121 AVLLLPLLIPRLPTKGLNAGLFFFAFPAVAFFLLRGGGLAGFGVSWVASLLQLFDDSIVN 180 VLL+PLLIPRLP KGLNAGLFFFA P VAFFLL GGGL+GFGVSW A+ LQLF +S+ Sbjct: 121 VVLLVPLLIPRLPAKGLNAGLFFFALPVVAFFLLYGGGLSGFGVSWTAATLQLFAESVDT 180 Query: 181 AGQVLVNLSRN-SAIGPLLWAVGKIIVLVGSLIGWLIFPLTSLREQLQMSSQPLWFDFLL 239 AG LV N +G L+W +GK++VL+G L LI+PL +R+QLQ S QP+W D L Sbjct: 181 AGNALVRGGANLPVVGMLMWLLGKLVVLIGMLASLLIWPLVWVRDQLQASHQPVWTDLAL 240 Query: 240 TTAIVSLILFFLGGGMRTGQRALLGSLASFAGIAIVIKLMGLDRGGLPIVDTRLWGGLLV 299 T +V+ ++F +GGG R R+++ + A+FAGIA+VI +MGLDRGGLPIVDTRLWGG+LV Sbjct: 241 TAIVVTALVFVIGGGSR-ALRSVVATAATFAGIALVIAIMGLDRGGLPIVDTRLWGGMLV 299 Query: 300 TLVVSVTGIVTSMPIGIALALGRRSTIPLIRIFSIAFIEFWRGVPLITVLFFATYMLPLF 359 TLVVSV GIV SMPIGIALALGRRSTIPLIR+FSIAFIE RGVPLITVLFFATYMLPLF Sbjct: 300 TLVVSVIGIVASMPIGIALALGRRSTIPLIRLFSIAFIELVRGVPLITVLFFATYMLPLF 359 Query: 360 LPGNFNVDGLVRALIGIALFAGAYQAEVVRGGLAAIPRGQGEAASALGLSWWKTTSLIVM 419 LPGN +DGLVRAL+G+ALF+GAY AEV+RGGL AIPRGQ EAASALGLSWWKTTS IV+ Sbjct: 360 LPGNMRIDGLVRALVGVALFSGAYMAEVIRGGLQAIPRGQAEAASALGLSWWKTTSFIVL 419 Query: 420 PQALRHVIPGLVNSFIALFKDTS 442 PQALRHVIPG+VNSFI+LFKDTS Sbjct: 420 PQALRHVIPGIVNSFISLFKDTS 442 >ref|YP_577326.1| amino acid ABC transporter permease [Nitrobacter hamburgensis X14] gb|ABE62866.1| amino acid ABC transporter membrane protein 2, PAAT family [Nitrobacter hamburgensis X14] Length = 506 Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust. Identities = 322/442 (72%), Positives = 359/442 (81%) Query: 1 MTDVTASSFVRQDLVPERRAPVKTTGLVGFIRTRLLNSPTNILLTILALGLLWYTIVPAF 60 MTD SFVR DLVPER AP+KT G VGF+RTRL N+PTN LLTI+ LLW+ IVP Sbjct: 1 MTDQPTLSFVRADLVPERPAPIKTIGFVGFLRTRLFNTPTNALLTIVGALLLWFIIVPTI 60 Query: 61 RFLLVDAVWSGKDRNACLAETAGRQVGACWPYIQAKLTQLIYGFYPEAERWRVNLTFVLA 120 RFLLVDAVW GKDR +CLA AG+ +GACWP++QAK+TQ IYGFYPE ERWRVNLTF+LA Sbjct: 61 RFLLVDAVWEGKDRTSCLAADAGQSIGACWPFVQAKITQFIYGFYPEPERWRVNLTFLLA 120 Query: 121 AVLLLPLLIPRLPTKGLNAGLFFFAFPAVAFFLLRGGGLAGFGVSWVASLLQLFDDSIVN 180 AVLLLPLLIPRLP K LNAG+FF AFP VAFFLL GGG+ GFGVSW +L F D + N Sbjct: 121 AVLLLPLLIPRLPAKSLNAGVFFVAFPVVAFFLLHGGGINGFGVSWTVGILSSFADGVGN 180 Query: 181 AGQVLVNLSRNSAIGPLLWAVGKIIVLVGSLIGWLIFPLTSLREQLQMSSQPLWFDFLLT 240 AG+ L S IG LW +G + +G + L +PL LR+++Q S QP+W+D T Sbjct: 181 AGRQLAASGEASGIGSTLWLLGNAVAWIGDALNSLAWPLIWLRDRIQNSGQPVWYDLACT 240 Query: 241 TAIVSLILFFLGGGMRTGQRALLGSLASFAGIAIVIKLMGLDRGGLPIVDTRLWGGLLVT 300 AIVSL+LF L G RTG RALL SL +F GI +VI +M LDRGGLPIV+TRLWGGLLVT Sbjct: 241 AAIVSLLLFLLSGAFRTGWRALLTSLTTFVGIGLVIAVMHLDRGGLPIVNTRLWGGLLVT 300 Query: 301 LVVSVTGIVTSMPIGIALALGRRSTIPLIRIFSIAFIEFWRGVPLITVLFFATYMLPLFL 360 LVVSVTGIV S+PIGIALALGRRSTIPLIRIFSIAFIEFWRG+PLITVLFFATYMLPLFL Sbjct: 301 LVVSVTGIVASIPIGIALALGRRSTIPLIRIFSIAFIEFWRGIPLITVLFFATYMLPLFL 360 Query: 361 PGNFNVDGLVRALIGIALFAGAYQAEVVRGGLAAIPRGQGEAASALGLSWWKTTSLIVMP 420 PGNF VDGLVR LIG+ALFAGAY AEV+RGGLAAIPRGQ EAA ALGLS+WKTT LIVMP Sbjct: 361 PGNFTVDGLVRVLIGVALFAGAYNAEVIRGGLAAIPRGQAEAAHALGLSYWKTTGLIVMP 420 Query: 421 QALRHVIPGLVNSFIALFKDTS 442 QALRHVIPGLVNSFIALFKDTS Sbjct: 421 QALRHVIPGLVNSFIALFKDTS 442 >ref|YP_532420.1| amino acid ABC transporter permease [Rhodopseudomonas palustris BisB18] gb|ABD88101.1| Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine [Rhodopseudomonas palustris BisB18] Length = 499 Score = 592 bits (1526), Expect = e-167, Method: Compositional matrix adjust. Identities = 319/442 (72%), Positives = 354/442 (80%), Gaps = 7/442 (1%) Query: 1 MTDVTASSFVRQDLVPERRAPVKTTGLVGFIRTRLLNSPTNILLTILALGLLWYTIVPAF 60 MT V AS FVRQDLV R APVKTTG GFIRTRL N+PTN +LTI+ LLW TIVP Sbjct: 1 MTGVPAS-FVRQDLVDSRPAPVKTTGFTGFIRTRLFNTPTNAILTIVGAALLWLTIVPTV 59 Query: 61 RFLLVDAVWSGKDRNACLAETAGRQVGACWPYIQAKLTQLIYGFYPEAERWRVNLTFVLA 120 +FLL+DAVW G R CLA AG +VGACWP++QAK Q +YGFYPE ERWRVNLTF LA Sbjct: 60 KFLLIDAVWQGTSRTDCLAAGAGHEVGACWPFVQAKFAQFVYGFYPEQERWRVNLTFGLA 119 Query: 121 AVLLLPLLIPRLPTKGLNAGLFFFAFPAVAFFLLRGGGLAGFGVSWVASLLQLFDDSIVN 180 A+LLLPLLIPR+P K LNAGLFF AFP VAFFLL GGGL GF +SW A LL F S+ Sbjct: 120 ALLLLPLLIPRVPAKSLNAGLFFVAFPVVAFFLLHGGGLHGFALSWTADLLSGFSASVSE 179 Query: 181 AGQVLVNLSRNSAIGPLLWAVGKIIVLVGSLIGWLIFPLTSLREQLQMSSQPLWFDFLLT 240 AG L+ + LL G +I G+ + LI+PL+ LR+ +Q S++PLWFDF+ T Sbjct: 180 AGS---KLAAGGGVSSLL---GSLIYGFGTAVWVLIWPLSWLRDAIQASARPLWFDFVCT 233 Query: 241 TAIVSLILFFLGGGMRTGQRALLGSLASFAGIAIVIKLMGLDRGGLPIVDTRLWGGLLVT 300 A+VS +LF L GG R G RALL SLA FAGIA+VI +M LDRGGLPIVDTR+WGGLLVT Sbjct: 234 AAVVSGLLFVLNGGFRNGWRALLRSLAMFAGIAVVIFVMRLDRGGLPIVDTRMWGGLLVT 293 Query: 301 LVVSVTGIVTSMPIGIALALGRRSTIPLIRIFSIAFIEFWRGVPLITVLFFATYMLPLFL 360 LVVSVTGIVTSMP+GIALALGRRSTIPLIRIFS+ FIEFWRGVPLITVLFFATYMLPLFL Sbjct: 294 LVVSVTGIVTSMPVGIALALGRRSTIPLIRIFSVLFIEFWRGVPLITVLFFATYMLPLFL 353 Query: 361 PGNFNVDGLVRALIGIALFAGAYQAEVVRGGLAAIPRGQGEAASALGLSWWKTTSLIVMP 420 PGNF VDGLVR LIGIALFAGAY AEV+RGGL AIPRGQ EAASALGLS+WK T L+VMP Sbjct: 354 PGNFTVDGLVRVLIGIALFAGAYNAEVIRGGLQAIPRGQAEAASALGLSYWKITGLVVMP 413 Query: 421 QALRHVIPGLVNSFIALFKDTS 442 QALRHVIPGLVNSFIALFKDTS Sbjct: 414 QALRHVIPGLVNSFIALFKDTS 435