BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0119.0006.p         (59 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771111.1| hypothetical protein bsr4471 [Bradyrhizobium ja...    64   8e-09
ref|YP_001205872.1| hypothetical protein BRADO3886 [Bradyrhizobi...    57   9e-07
ref|YP_001239919.1| hypothetical protein BBta_3943 [Bradyrhizobi...    57   1e-06

>ref|NP_771111.1| hypothetical protein bsr4471 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49736.1| bsr4471 [Bradyrhizobium japonicum USDA 110]
          Length = 59

 Score = 63.9 bits (154), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 41/54 (75%)

Query: 6  IDLSMPQPTLVPNDAPDISDDECVRRLARAVEEHDSEHLDEVARLIGRLAVTIE 59
          ID +   P+++P D P++SDDEC+  LARAVE  DS  LDEVA LIGRLAVTIE
Sbjct: 6  IDRAHLAPSILPADIPELSDDECIACLARAVETPDSARLDEVAALIGRLAVTIE 59


>ref|YP_001205872.1| hypothetical protein BRADO3886 [Bradyrhizobium sp. ORS 278]
 emb|CAL77647.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 61

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 36/47 (76%)

Query: 13 PTLVPNDAPDISDDECVRRLARAVEEHDSEHLDEVARLIGRLAVTIE 59
          P+L+P+    ++DDEC+ RLA AV   DS+HLDE+ +LIGRLAV IE
Sbjct: 15 PSLIPDPLERLTDDECLTRLADAVTRGDSDHLDEIVQLIGRLAVVIE 61


>ref|YP_001239919.1| hypothetical protein BBta_3943 [Bradyrhizobium sp. BTAi1]
 gb|ABQ36013.1| hypothetical protein BBta_3943 [Bradyrhizobium sp. BTAi1]
          Length = 61

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 37/51 (72%)

Query: 9  SMPQPTLVPNDAPDISDDECVRRLARAVEEHDSEHLDEVARLIGRLAVTIE 59
          S+  P+L+P+    +SDDEC+ RL  AV   +SE LDEVA+L+GRLAV IE
Sbjct: 11 SVSSPSLIPDPMERLSDDECLSRLVHAVSRGESERLDEVAQLLGRLAVVIE 61