BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0119.0003.p (464 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_532437.1| Type I secretion outer membrane protein, TolC [... 717 0.0 ref|ZP_08629893.1| type I secretion outer membrane protein [Brad... 696 0.0 ref|NP_771113.1| hypothetical protein blr4473 [Bradyrhizobium ja... 691 0.0 ref|YP_486507.1| Type I secretion outer membrane protein, TolC [... 690 0.0 ref|YP_569708.1| Type I secretion outer membrane protein, TolC [... 687 0.0 >ref|YP_532437.1| Type I secretion outer membrane protein, TolC [Rhodopseudomonas palustris BisB18] gb|ABD88118.1| Type I secretion outer membrane protein, TolC [Rhodopseudomonas palustris BisB18] Length = 464 Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/462 (78%), Positives = 404/462 (87%), Gaps = 8/462 (1%) Query: 6 AAATAV--LLLAEMGPVPALADTIEAALVRSYQNNPQLNAQRAQVRSTDENVPQALSGYR 63 AA TA+ L+LA +G P LADTIEAALVR+YQ+NPQLNAQRA VRSTDENVPQALSGYR Sbjct: 8 AAGTAIAGLILAHLGATPVLADTIEAALVRAYQSNPQLNAQRASVRSTDENVPQALSGYR 67 Query: 64 PKVALTASAGYQYTDTLTTQGGDANNLVRTQIHGANAPRSAGLTVNQSLFNA-QNAPRVR 122 P+V++TAS GYQYTD + TQGG N +IHG APR+ G+T Q+LFN Q A R R Sbjct: 68 PRVSVTASGGYQYTDVIATQGGQTN-----RIHGDTAPRAVGVTATQTLFNGNQTANRTR 122 Query: 123 AAESQVSAAREALRVLEQTVILSAATIYMDYLRDSAIVEVQRSNTRVLEQTLKQTQDRFN 182 AAESQVS+ARE LRVLEQ+V+LSAATIYMDYLRDSAIVEVQRSN RVLEQTLKQT+DRFN Sbjct: 123 AAESQVSSAREGLRVLEQSVMLSAATIYMDYLRDSAIVEVQRSNVRVLEQTLKQTRDRFN 182 Query: 183 VGEVTRTDVAQSEAQLAAGKTQQLTAESNLTTTRSNFRRIIGNEPQNLAPGSPVDRFLPT 242 VGEVTRTDVAQSEAQLAAG+TQQLTAESNLTTTRSNFRRIIGNEPQ LAPGSPVDRFLP Sbjct: 183 VGEVTRTDVAQSEAQLAAGRTQQLTAESNLTTTRSNFRRIIGNEPQALAPGSPVDRFLPA 242 Query: 243 TLAAAVELSLTQNPNVTSAMYGVDVNFLQVKVSEGALFPSVNLQTSVQQQYEQTMISQRA 302 TL A+EL LT+NPNVT++M+G+DV+FL VKV+EGALFP++ LQ + QQ YEQT+ + R Sbjct: 243 TLPTAIELGLTENPNVTASMFGIDVSFLNVKVNEGALFPTLTLQGNAQQGYEQTISTPRQ 302 Query: 303 FSAGTAVQLSVPLYQGGAEYSLIRQSKESLAQQRLVLEQTRDQARANVVTAWGQLVAGKS 362 F A QL+VP+YQGGAEY+LIRQSKESLAQQRL LEQ RDQ RA+VV AWGQL+AG++ Sbjct: 303 FVASAVAQLTVPIYQGGAEYALIRQSKESLAQQRLNLEQVRDQTRASVVQAWGQLLAGRA 362 Query: 363 QVASAQAQVTASEIALNGVREEAKAGQRTTLDVLNAQQALVNARNALVTAQHDRVVASYN 422 QV+SAQAQV ASEIALNGVREEA+AGQRTTLDVLNAQQALVNAR ALVTAQHDRVVASY Sbjct: 363 QVSSAQAQVAASEIALNGVREEARAGQRTTLDVLNAQQALVNARVALVTAQHDRVVASYA 422 Query: 423 VLSAVGRLSPQVMGLSTNVYDPSVHYQQVRDNWAGVRTPDGR 464 VL+AVGRLSPQV+ LST VYDPSVHYQQVRD+W GVRTPDGR Sbjct: 423 VLNAVGRLSPQVLKLSTTVYDPSVHYQQVRDSWFGVRTPDGR 464 >ref|ZP_08629893.1| type I secretion outer membrane protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07262.1| type I secretion outer membrane protein [Bradyrhizobiaceae bacterium SG-6C] Length = 470 Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/466 (74%), Positives = 398/466 (85%), Gaps = 6/466 (1%) Query: 2 KVVTAAATAVLLLAEMGPVPALADTIEAALVRSYQNNPQLNAQRAQVRSTDENVPQALSG 61 K+ A A LL++ + P +ADTIEAALVR+YQNNPQLNAQRA VR+TDE+VPQALSG Sbjct: 8 KLSAGVALATLLMSSVVATPVMADTIEAALVRAYQNNPQLNAQRASVRATDESVPQALSG 67 Query: 62 YRPKVALTASAGYQYTDTL--TTQGGDANNLVRTQIHGANAPRSAGLTVNQSLFNA-QNA 118 YRP++A+TASAG QYTD+ T GG + T + G NAPRS G T++Q+L+N Q Sbjct: 68 YRPRIAVTASAGTQYTDSQQNTNTGG---RVATTSLAGVNAPRSVGATISQTLYNGGQTG 124 Query: 119 PRVRAAESQVSAAREALRVLEQTVILSAATIYMDYLRDSAIVEVQRSNTRVLEQTLKQTQ 178 R RAAESQVSAARE LRVLEQTV+ SAAT+YMDYLRDSAIVEVQ+SN RVLEQTLKQTQ Sbjct: 125 NRTRAAESQVSAAREGLRVLEQTVLFSAATVYMDYLRDSAIVEVQKSNVRVLEQTLKQTQ 184 Query: 179 DRFNVGEVTRTDVAQSEAQLAAGKTQQLTAESNLTTTRSNFRRIIGNEPQNLAPGSPVDR 238 DRFNVGEVTRTDVAQS+AQLAAGKTQ LTAESNLTTTR+NFRRIIGN+P NLAPGSPVDR Sbjct: 185 DRFNVGEVTRTDVAQSQAQLAAGKTQLLTAESNLTTTRANFRRIIGNDPGNLAPGSPVDR 244 Query: 239 FLPTTLAAAVELSLTQNPNVTSAMYGVDVNFLQVKVSEGALFPSVNLQTSVQQQYEQTMI 298 +LP +L+ AV+LSL +NPNVT+AMYG+DV+FLQVKV+EGALFP+V LQ SVQQ YE TM Sbjct: 245 YLPPSLSGAVDLSLLENPNVTAAMYGIDVSFLQVKVAEGALFPTVTLQGSVQQSYESTMA 304 Query: 299 SQRAFSAGTAVQLSVPLYQGGAEYSLIRQSKESLAQQRLVLEQTRDQARANVVTAWGQLV 358 + RAF A QL+VP+YQGGAEYSLIRQSKE+LAQQRL LEQ RDQ RA V AWGQLV Sbjct: 305 TYRAFGASAVAQLTVPVYQGGAEYSLIRQSKETLAQQRLNLEQVRDQTRATVAQAWGQLV 364 Query: 359 AGKSQVASAQAQVTASEIALNGVREEAKAGQRTTLDVLNAQQALVNARNALVTAQHDRVV 418 AGK+QV SAQ+QVTASEIALNGVREEA+ GQRTTLDVLNAQQALVNAR ALVTAQHDRVV Sbjct: 365 AGKAQVQSAQSQVTASEIALNGVREEARVGQRTTLDVLNAQQALVNARVALVTAQHDRVV 424 Query: 419 ASYNVLSAVGRLSPQVMGLSTNVYDPSVHYQQVRDNWAGVRTPDGR 464 ASY+VL+++GRLSP + L+TNVYDPSVHY ++RD+W GVRTPDGR Sbjct: 425 ASYSVLNSIGRLSPSTLKLATNVYDPSVHYHEIRDSWFGVRTPDGR 470 >ref|NP_771113.1| hypothetical protein blr4473 [Bradyrhizobium japonicum USDA 110] dbj|BAC49738.1| blr4473 [Bradyrhizobium japonicum USDA 110] Length = 463 Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/467 (75%), Positives = 396/467 (84%), Gaps = 10/467 (2%) Query: 1 VKVVTAAATAVLLLAEMGPVPALADTIEAALVRSYQNNPQLNAQRAQVRSTDENVPQALS 60 VK+ T AA +VL+LA GP PALADTIEAALVR+YQNNPQLNAQRAQVRSTDENVPQALS Sbjct: 4 VKLFTGAAVSVLVLALAGPTPALADTIEAALVRAYQNNPQLNAQRAQVRSTDENVPQALS 63 Query: 61 GYRPKVALTASAGYQYTDTLTTQGGDANNLVRTQIHGANA--PRSAGLTVNQSLFNA-QN 117 GYRPKVALTAS GYQY D Q G IH N P +A LT+NQ+L+N Q Sbjct: 64 GYRPKVALTASTGYQYQDIQQVQRGPG-------IHEPNPLQPNAASLTINQTLYNGNQT 116 Query: 118 APRVRAAESQVSAAREALRVLEQTVILSAATIYMDYLRDSAIVEVQRSNTRVLEQTLKQT 177 A + RAAESQVS +RE LRVLEQTV+L AA+ YMDYLRD+A +EVQRSN RVLEQTLKQT Sbjct: 117 ANKTRAAESQVSGSREGLRVLEQTVLLQAASTYMDYLRDAATLEVQRSNVRVLEQTLKQT 176 Query: 178 QDRFNVGEVTRTDVAQSEAQLAAGKTQQLTAESNLTTTRSNFRRIIGNEPQNLAPGSPVD 237 +DRFNVGEVTRTDVAQSEAQLAAG+TQ LTAESNLTTTR+NFRRIIGNEP NLAPGSPVD Sbjct: 177 RDRFNVGEVTRTDVAQSEAQLAAGRTQALTAESNLTTTRANFRRIIGNEPTNLAPGSPVD 236 Query: 238 RFLPTTLAAAVELSLTQNPNVTSAMYGVDVNFLQVKVSEGALFPSVNLQTSVQQQYEQTM 297 RFLP T+AAAV L L +NP+VT+AMYG+DVN+LQVK++EGAL P+V +Q + QQ++QT+ Sbjct: 237 RFLPATIAAAVNLGLVENPSVTAAMYGIDVNYLQVKINEGALLPTVTVQAGITQQFQQTL 296 Query: 298 ISQRAFSAGTAVQLSVPLYQGGAEYSLIRQSKESLAQQRLVLEQTRDQARANVVTAWGQL 357 R +A SVP+YQGG EYSLIRQSKE+LAQQRL LE TRDQ RAN+V AWGQL Sbjct: 297 TVFRTTTASAIATASVPIYQGGIEYSLIRQSKENLAQQRLNLETTRDQTRANIVQAWGQL 356 Query: 358 VAGKSQVASAQAQVTASEIALNGVREEAKAGQRTTLDVLNAQQALVNARNALVTAQHDRV 417 AGK+QV SAQAQVTASEIALNGVREEAKAGQRTTLDVLNAQQALVNAR ALVTAQHDRV Sbjct: 357 EAGKAQVQSAQAQVTASEIALNGVREEAKAGQRTTLDVLNAQQALVNARVALVTAQHDRV 416 Query: 418 VASYNVLSAVGRLSPQVMGLSTNVYDPSVHYQQVRDNWAGVRTPDGR 464 VASY+VL+AVGRL+PQV+GL+T VYDPSVHYQQ+RD+WAGVRTPDGR Sbjct: 417 VASYSVLNAVGRLAPQVLGLNTTVYDPSVHYQQIRDSWAGVRTPDGR 463 >ref|YP_486507.1| Type I secretion outer membrane protein, TolC [Rhodopseudomonas palustris HaA2] gb|ABD07596.1| Type I secretion outer membrane protein, TolC [Rhodopseudomonas palustris HaA2] Length = 460 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/465 (73%), Positives = 395/465 (84%), Gaps = 6/465 (1%) Query: 1 VKVVTAAATAVLLLAEMGPVPALADTIEAALVRSYQNNPQLNAQRAQVRSTDENVPQALS 60 +K ++ TA ++LA +GP P LA+TIEAAL+R+YQ NPQLNAQRA VRSTDE+VPQALS Sbjct: 1 MKRLSGLMTAGVVLACLGPAPVLAETIEAALIRAYQTNPQLNAQRASVRSTDESVPQALS 60 Query: 61 GYRPKVALTASAGYQYTDTLTTQGGDANNLVRTQIHGANAPRSAGLTVNQSLFNA-QNAP 119 GYRPKV++TAS GYQYTD Q G+ R Q++G PRS G+T Q+LFN Q A Sbjct: 61 GYRPKVSVTASGGYQYTDVAGVQLGN-----RYQLNGTQVPRSVGITATQTLFNGNQTAN 115 Query: 120 RVRAAESQVSAAREALRVLEQTVILSAATIYMDYLRDSAIVEVQRSNTRVLEQTLKQTQD 179 R RAAE QVS+ARE LRVLEQ+V+LSAATIYMDYLRD+A VEVQ+SN RVL+QTLKQT D Sbjct: 116 RTRAAEGQVSSAREGLRVLEQSVLLSAATIYMDYLRDAATVEVQKSNVRVLDQTLKQTND 175 Query: 180 RFNVGEVTRTDVAQSEAQLAAGKTQQLTAESNLTTTRSNFRRIIGNEPQNLAPGSPVDRF 239 RFNVGEVTRTDVAQS+AQLAAG TQ LTAESNLTTTR+N+RRIIG+EP LAPGSPVDRF Sbjct: 176 RFNVGEVTRTDVAQSQAQLAAGNTQLLTAESNLTTTRANYRRIIGSEPTGLAPGSPVDRF 235 Query: 240 LPTTLAAAVELSLTQNPNVTSAMYGVDVNFLQVKVSEGALFPSVNLQTSVQQQYEQTMIS 299 LP TLA AVEL + +NPNVTSAMYGVDVN+L VK++EGALFP+V LQ + QQ +E ++ + Sbjct: 236 LPATLAKAVELGMVENPNVTSAMYGVDVNYLNVKINEGALFPTVTLQANAQQSWESSITT 295 Query: 300 QRAFSAGTAVQLSVPLYQGGAEYSLIRQSKESLAQQRLVLEQTRDQARANVVTAWGQLVA 359 + F AG Q+S+P+YQGG+EYSLIRQSKESLAQQRL LEQ RDQ RA +V AWGQL A Sbjct: 296 SKQFVAGATAQVSIPIYQGGSEYSLIRQSKESLAQQRLYLEQVRDQTRATIVQAWGQLEA 355 Query: 360 GKSQVASAQAQVTASEIALNGVREEAKAGQRTTLDVLNAQQALVNARNALVTAQHDRVVA 419 G++QVASAQ+QV ASEIALNGVREEA+AGQRTTLDVLNAQQALVNAR +LVTAQHDRVVA Sbjct: 356 GRAQVASAQSQVKASEIALNGVREEARAGQRTTLDVLNAQQALVNARVSLVTAQHDRVVA 415 Query: 420 SYNVLSAVGRLSPQVMGLSTNVYDPSVHYQQVRDNWAGVRTPDGR 464 SY+VLSA+GRL+PQV+GL T+VYDPSVHY QVRD+W GVRTPDGR Sbjct: 416 SYSVLSAIGRLAPQVLGLKTDVYDPSVHYHQVRDSWVGVRTPDGR 460 >ref|YP_569708.1| Type I secretion outer membrane protein, TolC [Rhodopseudomonas palustris BisB5] gb|ABE39807.1| Type I secretion outer membrane protein, TolC [Rhodopseudomonas palustris BisB5] Length = 522 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/467 (73%), Positives = 399/467 (85%), Gaps = 10/467 (2%) Query: 1 VKVVTAAATAVLLLAEMGPVPALADTIEAALVRSYQNNPQLNAQRAQVRSTDENVPQALS 60 VK + TA ++L +GP P A+TIE+AL+R+YQ NPQLNAQRA VRSTDE VPQALS Sbjct: 63 VKRFSGLVTAGIVLVCLGPAPVSAETIESALIRAYQTNPQLNAQRASVRSTDEQVPQALS 122 Query: 61 GYRPKVALTASAGYQYTDTLTTQGGDANNLVRTQIH--GANAPRSAGLTVNQSLFNA-QN 117 GYRPKV++TAS GYQYTD + GG+ QIH G+N PR+ G TV+Q+LFN Q Sbjct: 123 GYRPKVSITASGGYQYTDVNSLFGGN-------QIHLSGSNYPRTVGATVSQTLFNGNQT 175 Query: 118 APRVRAAESQVSAAREALRVLEQTVILSAATIYMDYLRDSAIVEVQRSNTRVLEQTLKQT 177 A R RAAESQVS+ARE LRVLEQ+V+LSAATIYMDYLRDSA VEVQ+SN RVLEQTLKQT Sbjct: 176 ANRTRAAESQVSSAREGLRVLEQSVLLSAATIYMDYLRDSATVEVQKSNVRVLEQTLKQT 235 Query: 178 QDRFNVGEVTRTDVAQSEAQLAAGKTQQLTAESNLTTTRSNFRRIIGNEPQNLAPGSPVD 237 DRFNVGEVTRTDVAQS+AQLAAG TQ LTAESNLTTTR+N+RRIIG+EP LAPGSPVD Sbjct: 236 NDRFNVGEVTRTDVAQSQAQLAAGNTQLLTAESNLTTTRANYRRIIGSEPTGLAPGSPVD 295 Query: 238 RFLPTTLAAAVELSLTQNPNVTSAMYGVDVNFLQVKVSEGALFPSVNLQTSVQQQYEQTM 297 RFLP TLA AV+L LT+NPNVT+AM+G+DV++L VK++EGALFP+V+LQ + QQ YEQ++ Sbjct: 296 RFLPATLAQAVDLGLTENPNVTAAMFGIDVSYLNVKINEGALFPTVSLQANAQQGYEQSI 355 Query: 298 ISQRAFSAGTAVQLSVPLYQGGAEYSLIRQSKESLAQQRLVLEQTRDQARANVVTAWGQL 357 S R F A Q+SVP++QGGAEY+LIRQSKESL+QQRL LEQ RDQARA++V AWGQL Sbjct: 356 TSPRQFVASAIAQVSVPIFQGGAEYALIRQSKESLSQQRLNLEQVRDQARASIVQAWGQL 415 Query: 358 VAGKSQVASAQAQVTASEIALNGVREEAKAGQRTTLDVLNAQQALVNARNALVTAQHDRV 417 AG++QVASAQ+QV ASEIALNGVREEA+AGQRTTLDVLNAQQALVNAR +LVTAQHDRV Sbjct: 416 QAGRAQVASAQSQVKASEIALNGVREEARAGQRTTLDVLNAQQALVNARVSLVTAQHDRV 475 Query: 418 VASYNVLSAVGRLSPQVMGLSTNVYDPSVHYQQVRDNWAGVRTPDGR 464 VASY VLSAVGRL+PQV+GL T++YDPSVHYQQVRD+W GVRTPDGR Sbjct: 476 VASYAVLSAVGRLAPQVLGLKTDIYDPSVHYQQVRDSWVGVRTPDGR 522