BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0118.0042.p         (116 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_770879.1| hypothetical protein bll4239 [Bradyrhizobium ja...   193   7e-48
ref|ZP_07028600.1| alkylphosphonate utilization operon protein P...   190   5e-47
ref|YP_001240208.1| putative phosphonate metabolism PhnA-like pr...   186   1e-45
ref|YP_001205469.1| putative Zn-ribbon-containing protein involv...   183   9e-45
ref|YP_426564.1| PhnA protein [Rhodospirillum rubrum ATCC 11170]...   176   1e-42

>ref|NP_770879.1| hypothetical protein bll4239 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49504.1| bll4239 [Bradyrhizobium japonicum USDA 110]
          Length = 154

 Score =  193 bits (491), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 97/116 (83%), Positives = 102/116 (87%)

Query: 1   MDAAMNCPKCNSEHAYQDGVLWVCPECAHEWSTDAAAAAESAQEAGVRDAHGNPLTDGDS 60
           M  AM CP C SEHAYQD  LWVCPECAHEWS  A AAA++ QEAGVRDAHGN LTDGDS
Sbjct: 39  MPDAMKCPNCQSEHAYQDRDLWVCPECAHEWSATAGAAADAPQEAGVRDAHGNLLTDGDS 98

Query: 61  VIVIKDLKVKGSSSVVKGGTKVRNIRLTEGSDGHNIACKIDGIGAMNLKSEFVKKA 116
           VIV+KDLKVKGSSSVVKGGTKVRNIRL + +DGHNIACKIDGIGAMNLKSEFVKKA
Sbjct: 99  VIVMKDLKVKGSSSVVKGGTKVRNIRLQDATDGHNIACKIDGIGAMNLKSEFVKKA 154


>ref|ZP_07028600.1| alkylphosphonate utilization operon protein PhnA [Afipia sp. 1NLS2]
 gb|EFI50023.1| alkylphosphonate utilization operon protein PhnA [Afipia sp. 1NLS2]
          Length = 117

 Score =  190 bits (483), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 92/116 (79%), Positives = 101/116 (87%), Gaps = 1/116 (0%)

Query: 1   MDAAMNCPKCNSEHAYQDGVLWVCPECAHEWST-DAAAAAESAQEAGVRDAHGNPLTDGD 59
           MD AMNCPKCNS H YQD  LW CPECAHEWS  D  A+AE++ EA VRDAHGN L DGD
Sbjct: 1   MDDAMNCPKCNSGHTYQDRGLWACPECAHEWSVEDGGASAETSLEASVRDAHGNALADGD 60

Query: 60  SVIVIKDLKVKGSSSVVKGGTKVRNIRLTEGSDGHNIACKIDGIGAMNLKSEFVKK 115
           S+IVIKDLKVKG+SSV+KGGTKVRNIRLT+ SDGHNIACKI+GIGAMNLKS+FVKK
Sbjct: 61  SIIVIKDLKVKGASSVIKGGTKVRNIRLTDASDGHNIACKIEGIGAMNLKSKFVKK 116


>ref|YP_001240208.1| putative phosphonate metabolism PhnA-like protein [Bradyrhizobium
           sp. BTAi1]
 gb|ABQ36302.1| putative Zn-ribbon-containing protein involved in phosphonate
           metabolism, PhnA-like protein [Bradyrhizobium sp. BTAi1]
          Length = 114

 Score =  186 bits (471), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 92/116 (79%), Positives = 96/116 (82%), Gaps = 2/116 (1%)

Query: 1   MDAAMNCPKCNSEHAYQDGVLWVCPECAHEWSTDAAAAAESAQEAGVRDAHGNPLTDGDS 60
           M  A  CP+C SEHAYQDG LWVCPEC HEWS DA  AAE   E  +RDA+GN L DGDS
Sbjct: 1   MTDATICPQCRSEHAYQDGALWVCPECGHEWSGDAVVAAE--DETSIRDANGNVLADGDS 58

Query: 61  VIVIKDLKVKGSSSVVKGGTKVRNIRLTEGSDGHNIACKIDGIGAMNLKSEFVKKA 116
           VIVIKDLKVKGSSSVVKGGTKVRNIRL E SDGHNIACKIDGIG MNLKSEFV+KA
Sbjct: 59  VIVIKDLKVKGSSSVVKGGTKVRNIRLQEASDGHNIACKIDGIGQMNLKSEFVRKA 114


>ref|YP_001205469.1| putative Zn-ribbon-containing protein involved in phosphonate
           metabolism, PhnA-like protein [Bradyrhizobium sp. ORS
           278]
 emb|CAL77242.1| putative Zn-ribbon-containing protein involved in phosphonate
           metabolism, PhnA-like protein [Bradyrhizobium sp. ORS
           278]
          Length = 115

 Score =  183 bits (464), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 90/116 (77%), Positives = 96/116 (82%), Gaps = 1/116 (0%)

Query: 1   MDAAMNCPKCNSEHAYQDGVLWVCPECAHEWSTDAAAAAESAQEAGVRDAHGNPLTDGDS 60
           M  A  CP+C SEHAYQDG LWVCPEC HEWS DAA A   A +  +RDA+GN LTDGDS
Sbjct: 1   MTDATTCPQCRSEHAYQDGALWVCPECGHEWSGDAAIAPAEA-DTSIRDANGNVLTDGDS 59

Query: 61  VIVIKDLKVKGSSSVVKGGTKVRNIRLTEGSDGHNIACKIDGIGAMNLKSEFVKKA 116
           VIVIKDLKVKGSSS VKGGTKVRNIRL E SDGHNIACKIDGIG +NLKSEFV+KA
Sbjct: 60  VIVIKDLKVKGSSSTVKGGTKVRNIRLQEASDGHNIACKIDGIGQINLKSEFVRKA 115


>ref|YP_426564.1| PhnA protein [Rhodospirillum rubrum ATCC 11170]
 gb|ABC22277.1| PhnA protein [Rhodospirillum rubrum ATCC 11170]
 gb|AEO47995.1| PhnA protein [Rhodospirillum rubrum F11]
          Length = 116

 Score =  176 bits (445), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 89/116 (76%), Positives = 97/116 (83%)

Query: 1   MDAAMNCPKCNSEHAYQDGVLWVCPECAHEWSTDAAAAAESAQEAGVRDAHGNPLTDGDS 60
           MD  + CP C SEHAY DG LW+CPECAHEW+ +AAA   +A   GVRDA GNPL DGDS
Sbjct: 1   MDDGLKCPACGSEHAYHDGTLWICPECAHEWNPEAAAGDAAAPAEGVRDAFGNPLADGDS 60

Query: 61  VIVIKDLKVKGSSSVVKGGTKVRNIRLTEGSDGHNIACKIDGIGAMNLKSEFVKKA 116
           V VIKDLKVKGSS VVKGGTKV+NIRLT+ +DGHNIACKIDGIGAMNLKSEFVKKA
Sbjct: 61  VSVIKDLKVKGSSLVVKGGTKVKNIRLTDAADGHNIACKIDGIGAMNLKSEFVKKA 116