BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0118.0041.p (364 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_569147.1| peptidase S1C, Do [Rhodopseudomonas palustris B... 352 8e-95 ref|ZP_07026747.1| protease Do [Afipia sp. 1NLS2] >gi|298591389|... 344 1e-92 ref|YP_317809.1| peptidase S1C, Do [Nitrobacter winogradskyi Nb-... 343 4e-92 ref|YP_487050.1| peptidase S1C, Do [Rhodopseudomonas palustris H... 342 4e-92 ref|YP_002289549.1| protease Do subfamily [Oligotropha carboxido... 340 2e-91 >ref|YP_569147.1| peptidase S1C, Do [Rhodopseudomonas palustris BisB5] gb|ABE39246.1| Peptidase S1C, Do [Rhodopseudomonas palustris BisB5] Length = 526 Score = 352 bits (902), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 193/351 (54%), Positives = 243/351 (69%), Gaps = 22/351 (6%) Query: 12 PGEFADLAEKVGPAVIGVNAKVA--AADDDDSSPGQFPGDSSGPDDSPDQDTPGRAVPNP 69 P FAD+ EKV P+VI V +A A ++D + +DSP Q PG + Sbjct: 72 PVGFADIVEKVKPSVISVKVNIAEKTAKNEDRA-----------EDSPFQ--PGSPMERF 118 Query: 70 GRRGPGNLPKL-------GEMTSIGSGFFISADGYAVTNNHVLGGSDRADVRTSDNKVYK 122 RR G +P G MT GSGFFISADGYAVTNNHV+ G+D+ +V T D K YK Sbjct: 119 FRRFGGEMPPGMRGHRGGGTMTGQGSGFFISADGYAVTNNHVVDGADKVEVTTDDGKTYK 178 Query: 123 AKVLGKDPVSDLALLKVDGRTDFSYVKLADQPPRTGDWVLAAGNSFGLGNTVTAGIVSAR 182 AKV+G D +DLAL+K +GRTDF + KL++ PR GDWVLA GN FGLG TVTAGIVSA Sbjct: 179 AKVIGTDQRTDLALIKAEGRTDFPFAKLSEGKPRIGDWVLAVGNPFGLGGTVTAGIVSAS 238 Query: 183 ARDLETGSSEDFVQIDARINPGESGGPRFNTHGEVIGVNTSIFSPSGGSVGVAFAIPADT 242 RD+ G +DF+QIDA +N G SGGP F+T+GEV+GVNT+I+SPSGGSVG+AF+IPA T Sbjct: 239 GRDIGNGPYDDFIQIDAPVNKGNSGGPAFDTNGEVMGVNTAIYSPSGGSVGIAFSIPAST 298 Query: 243 VKTVIPQLKDKGTVTRGWMGAQIQSITPGIAESLGADNLHGAVVVGVQTGGPAAKAGLRR 302 VKTV+ QLKDKG+V+RGW+G QIQ +TP IA+SLG GA+V Q GPAAKAG+ Sbjct: 299 VKTVVQQLKDKGSVSRGWIGVQIQPVTPEIADSLGLKKPDGALVAEPQPNGPAAKAGIES 358 Query: 303 GDVITSVNDEPIKSANELTKKVHAGAPGSSVKLSMLRDHAPNSLSVTLGQL 353 GDVIT+VN P+K A EL + + APG++VKL+++ A L++TLGQL Sbjct: 359 GDVITAVNGTPVKDARELARTIGGFAPGNTVKLTVVHKGADRELNLTLGQL 409 >ref|ZP_07026747.1| protease Do [Afipia sp. 1NLS2] gb|EFI51590.1| protease Do [Afipia sp. 1NLS2] Length = 525 Score = 344 bits (883), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 189/360 (52%), Positives = 242/360 (67%), Gaps = 29/360 (8%) Query: 12 PGEFADLAEKVGPAVIGVNAKVA---AADDDDSSPGQFPGDSSGPDDSPDQDTPGRAVPN 68 P FAD+ E+V P+VI V ++ AD++D P FP PG + Sbjct: 69 PVGFADIVERVKPSVISVRVRIEEKQTADNNDDLP--FP--------------PGSPMER 112 Query: 69 PGRRGPGNLPKLGE----------MTSIGSGFFISADGYAVTNNHVLGGSDRADVRTSDN 118 RR G G +T GSGFFISADGYAVTNNHV+ G+D+ +V T D Sbjct: 113 FFRRFGGPDGFPGGPGGRRGRGNLVTGQGSGFFISADGYAVTNNHVVDGADKVEVTTDDG 172 Query: 119 KVYKAKVLGKDPVSDLALLKVDGRTDFSYVKLADQPPRTGDWVLAAGNSFGLGNTVTAGI 178 K YKAKV+G D +DLAL+KV+G ++F + KL+D PR GDWVLA GN FGLG TVTAGI Sbjct: 173 KTYKAKVIGTDKRTDLALIKVEGGSNFPFAKLSDGEPRIGDWVLAVGNPFGLGGTVTAGI 232 Query: 179 VSARARDLETGSSEDFVQIDARINPGESGGPRFNTHGEVIGVNTSIFSPSGGSVGVAFAI 238 VSAR RD+ G +DF+QIDA +N G SGGP FNT GEVIGVNT+I+SPSGGSVG+AF+I Sbjct: 233 VSARGRDIGNGPYDDFIQIDAPVNKGNSGGPAFNTEGEVIGVNTAIYSPSGGSVGIAFSI 292 Query: 239 PADTVKTVIPQLKDKGTVTRGWMGAQIQSITPGIAESLGADNLHGAVVVGVQTGGPAAKA 298 P+ TVK V+ QLKDKG+V+RGW+G QIQ +TP IA+SLG GA+V QT GPAAKA Sbjct: 293 PSATVKNVVAQLKDKGSVSRGWIGVQIQPVTPEIADSLGLKKAEGALVAEPQTNGPAAKA 352 Query: 299 GLRRGDVITSVNDEPIKSANELTKKVHAGAPGSSVKLSMLRDHAPNSLSVTLGQLAQSQA 358 G+ GDVI VND+P+K A EL + + APG+S+KL +L + +L++TLG+L +++ Sbjct: 353 GIESGDVINKVNDQPVKDARELARTIGGMAPGASIKLGVLHKGSEKTLTLTLGELPNAKS 412 >ref|YP_317809.1| peptidase S1C, Do [Nitrobacter winogradskyi Nb-255] gb|ABA04457.1| peptidase S1C, Do [Nitrobacter winogradskyi Nb-255] Length = 516 Score = 343 bits (879), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 189/351 (53%), Positives = 242/351 (68%), Gaps = 23/351 (6%) Query: 12 PGEFADLAEKVGPAVIGVNAK-----VAAADDDDSSPG----QFPGDSSGPDDSPDQDTP 62 P FAD+ E+V P+VI V + VA+ DD PG +F GPD P P Sbjct: 66 PIGFADIVERVKPSVISVKIRMKDRAVASGDDSPFQPGSPMERFFRRFGGPDGLP----P 121 Query: 63 GRAVPNPGRRGPGNLPKLGEMTSIGSGFFISADGYAVTNNHVLGGSDRADVRTSDNKVYK 122 G GRRGPG +T GSGFFISADGYAVTNNHV+ G+D+ +V T D K Y Sbjct: 122 GMR----GRRGPG------LVTGQGSGFFISADGYAVTNNHVVDGADKVEVTTDDGKTYT 171 Query: 123 AKVLGKDPVSDLALLKVDGRTDFSYVKLADQPPRTGDWVLAAGNSFGLGNTVTAGIVSAR 182 AKV+G DP +D+AL+KV+G + F + KL+D R GDWVLA GN FGLG +VTAGIVSA Sbjct: 172 AKVIGADPRTDIALIKVEGGSSFPFAKLSDDKVRIGDWVLAVGNPFGLGGSVTAGIVSAS 231 Query: 183 ARDLETGSSEDFVQIDARINPGESGGPRFNTHGEVIGVNTSIFSPSGGSVGVAFAIPADT 242 RD+ TG +DF+QIDA +N G SGGP FN G+VIGVNT+I+SPSGGSVG+AF+IPA+T Sbjct: 232 GRDIGTGPYDDFIQIDAPVNKGNSGGPAFNMKGDVIGVNTAIYSPSGGSVGIAFSIPANT 291 Query: 243 VKTVIPQLKDKGTVTRGWMGAQIQSITPGIAESLGADNLHGAVVVGVQTGGPAAKAGLRR 302 VK+V+ QLKDKG+V+RGW+G QIQ +T IA+SLG GA+V Q PAAKAG++ Sbjct: 292 VKSVVAQLKDKGSVSRGWIGVQIQPVTSDIADSLGLKKAEGALVAEPQANSPAAKAGIKS 351 Query: 303 GDVITSVNDEPIKSANELTKKVHAGAPGSSVKLSMLRDHAPNSLSVTLGQL 353 GDVIT+VN +P+K A EL + + + APG+S+KL++LR +++TLG L Sbjct: 352 GDVITAVNGDPVKDARELARTIGSLAPGTSIKLNVLRKGTDKVVNLTLGTL 402 >ref|YP_487050.1| peptidase S1C, Do [Rhodopseudomonas palustris HaA2] gb|ABD08139.1| Peptidase S1C, Do [Rhodopseudomonas palustris HaA2] Length = 528 Score = 342 bits (878), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 192/356 (53%), Positives = 239/356 (67%), Gaps = 19/356 (5%) Query: 7 HGNGGPGEFADLAEKVGPAVIGVNAKVA--AADDDDSSPGQFPGDSSGPDDSPDQDTPGR 64 H P FAD+ EKV P+VI V +A A D+ S ++SP PG Sbjct: 66 HKAQQPVGFADIVEKVKPSVISVKVNIAEKVAKTDERSERS--------EESPF--APGS 115 Query: 65 AVPNPGRRGPGNLP-------KLGEMTSIGSGFFISADGYAVTNNHVLGGSDRADVRTSD 117 + RR G +P G MT GSGFFI+ADGYAVTNNHV+ G+D+ +V T D Sbjct: 116 PMERFFRRFGGEMPPGMRGHRGGGMMTGQGSGFFITADGYAVTNNHVVDGADKVEVTTDD 175 Query: 118 NKVYKAKVLGKDPVSDLALLKVDGRTDFSYVKLADQPPRTGDWVLAAGNSFGLGNTVTAG 177 K YKAKV+G D +DLAL+K +GRTDF + KL++ PR GDWVLA GN FGLG TVTAG Sbjct: 176 GKTYKAKVIGTDQRTDLALIKAEGRTDFPFAKLSEGKPRIGDWVLAVGNPFGLGGTVTAG 235 Query: 178 IVSARARDLETGSSEDFVQIDARINPGESGGPRFNTHGEVIGVNTSIFSPSGGSVGVAFA 237 IVSA RDL G +DF+QIDA +N G SGGP F+ +GEV+GVNT+I+SPSGGSVG+AF+ Sbjct: 236 IVSASGRDLGNGPYDDFIQIDAPVNKGNSGGPAFDVNGEVMGVNTAIYSPSGGSVGIAFS 295 Query: 238 IPADTVKTVIPQLKDKGTVTRGWMGAQIQSITPGIAESLGADNLHGAVVVGVQTGGPAAK 297 IPA TVK V+ QLKDKG+V+RGW+G QIQ +TP IA+SLG GA+V Q GPAAK Sbjct: 296 IPASTVKAVVQQLKDKGSVSRGWIGVQIQPVTPEIADSLGLKKPDGALVAEPQPNGPAAK 355 Query: 298 AGLRRGDVITSVNDEPIKSANELTKKVHAGAPGSSVKLSMLRDHAPNSLSVTLGQL 353 AG+ GDVIT+VN P+K A EL + + APG++VKL++ A LS+TLGQL Sbjct: 356 AGIESGDVITAVNGAPVKDARELARTIGGFAPGNTVKLTVFHKGADRELSLTLGQL 411 >ref|YP_002289549.1| protease Do subfamily [Oligotropha carboxidovorans OM5] ref|YP_004632447.1| serine protease, do-like protein [Oligotropha carboxidovorans OM5] gb|ACI93684.1| protease Do subfamily [Oligotropha carboxidovorans OM5] gb|AEI02630.1| putative serine protease, do-like protein [Oligotropha carboxidovorans OM4] gb|AEI06206.1| putative serine protease, do-like protein [Oligotropha carboxidovorans OM5] Length = 528 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 186/349 (53%), Positives = 241/349 (69%), Gaps = 13/349 (3%) Query: 15 FADLAEKVGPAVIGVNAKVA---AADDDDSSPGQFPGDSSGPDDSPDQDTPGRAVPNPGR 71 FAD+ E+V P+VI V K+ +A++DD P P SP + R G Sbjct: 79 FADIVERVKPSVISVRVKIEEKQSANEDD-----LPF----PPGSPMERFFRRFGGPDGF 129 Query: 72 RGPGNLPKLGEMTS-IGSGFFISADGYAVTNNHVLGGSDRADVRTSDNKVYKAKVLGKDP 130 G G +T+ GSGFFISADGYAVTNNHV+ G+++ +V T D K YKAKV+G D Sbjct: 130 PGGRGPRGRGHLTTGQGSGFFISADGYAVTNNHVVDGAEQVEVTTDDGKTYKAKVIGSDK 189 Query: 131 VSDLALLKVDGRTDFSYVKLADQPPRTGDWVLAAGNSFGLGNTVTAGIVSARARDLETGS 190 +DLAL+KV+G +DF + KL+D PR GDWVLA GN FGLG TVT+GI+SAR RD+ G Sbjct: 190 RTDLALIKVEGGSDFPFAKLSDSEPRIGDWVLAVGNPFGLGGTVTSGIISARGRDIGNGP 249 Query: 191 SEDFVQIDARINPGESGGPRFNTHGEVIGVNTSIFSPSGGSVGVAFAIPADTVKTVIPQL 250 +DF+QIDA +N G SGGP FNT GEVIGVNT+I+SPSGGSVG+AF+IP+ TVK V+ QL Sbjct: 250 YDDFIQIDAAVNKGNSGGPAFNTAGEVIGVNTAIYSPSGGSVGIAFSIPSATVKNVVAQL 309 Query: 251 KDKGTVTRGWMGAQIQSITPGIAESLGADNLHGAVVVGVQTGGPAAKAGLRRGDVITSVN 310 KDKG+V+RGW+G QIQ +TP IA+SLG GA+V Q GPAAKAG+ GDVI VN Sbjct: 310 KDKGSVSRGWIGVQIQPVTPEIADSLGLKKPEGALVAEPQANGPAAKAGIESGDVINKVN 369 Query: 311 DEPIKSANELTKKVHAGAPGSSVKLSMLRDHAPNSLSVTLGQLAQSQAP 359 D+P+K A EL + + APG+S+KL +L A ++++TLG+L + +P Sbjct: 370 DQPVKDARELARTIGGLAPGASIKLGVLHKGAEKTVTLTLGELPNNVSP 418