BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0118.0033.p (525 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001205483.1| ribonucleotide-diphosphate reductase subunit... 991 0.0 ref|YP_001240198.1| ribonucleotide-diphosphate reductase subunit... 990 0.0 ref|YP_318184.1| ribonucleotide-diphosphate reductase subunit al... 983 0.0 ref|NP_770914.1| ribonucleotide-diphosphate reductase subunit al... 983 0.0 ref|ZP_08630088.1| coenzyme B12-dependent class II ribonucleotid... 980 0.0 >ref|YP_001205483.1| ribonucleotide-diphosphate reductase subunit alpha [Bradyrhizobium sp. ORS 278] emb|CAL77257.1| ribonucleotide reductase large subunit [Bradyrhizobium sp. ORS 278] Length = 1256 Score = 991 bits (2563), Expect = 0.0, Method: Compositional matrix adjust. Identities = 466/498 (93%), Positives = 477/498 (95%) Query: 1 MRIERRNTTSGQSPYAGINFRLTTSEIRNPDGSVVFRAENVEVPEFWSQVASDVLAQKYF 60 MRIERRNTT GQS Y GI+FRLTTSEIRNPDGSVVFR ENVEVPEFWSQVASDVLAQKYF Sbjct: 5 MRIERRNTTEGQSAYQGIDFRLTTSEIRNPDGSVVFRLENVEVPEFWSQVASDVLAQKYF 64 Query: 61 RKAGVAARLKKVEEETVPSWLWRSVPDTEALAALPENERIVGETSAKQVFDRLAGCWTYW 120 RKAGVAARLKKVEEETVPSWLWRSVPDTEAL+ LPENER E SAKQVFDRLAGCWTYW Sbjct: 65 RKAGVAARLKKVEEETVPSWLWRSVPDTEALSQLPENERYGSERSAKQVFDRLAGCWTYW 124 Query: 121 GWKGGYFSTEEDALAFFDELRFQLAKQMVAPNSPQWFNTGLHWAYGVDGPGQGHYYVDWK 180 GWKG YFS+EEDA+AF+DELRF LAKQMVAPNSPQWFNTGLHWAYG+DGPGQGHYYVD+K Sbjct: 125 GWKGNYFSSEEDAVAFYDELRFMLAKQMVAPNSPQWFNTGLHWAYGIDGPGQGHYYVDYK 184 Query: 181 TGKLTKSKSAYEHPQPHACFIQGVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSSLRG 240 TGKLTKSKS+YEHPQPHACFIQGV DDLVN+GGIMDLWVREARLFKYGSGTGSNFS LRG Sbjct: 185 TGKLTKSKSSYEHPQPHACFIQGVEDDLVNDGGIMDLWVREARLFKYGSGTGSNFSRLRG 244 Query: 241 EGEKLSGGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIETYIDWKVKE 300 EGEKLSGGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIE YIDWKVKE Sbjct: 245 EGEKLSGGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEAYIDWKVKE 304 Query: 301 EQKVAALVTGSKINQKHLKAVMKACVNCEGSGDDCFDPEKNPALRREIKLARRNLVPDNY 360 EQKVAALVTGSKINQKHLKAVMKACVNCEGSGDDCFDPEKNPALRREIKLARR LVPDNY Sbjct: 305 EQKVAALVTGSKINQKHLKAVMKACVNCEGSGDDCFDPEKNPALRREIKLARRALVPDNY 364 Query: 361 IKRVIQFARQGYKDIQFDTYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGDWNLV 420 IKRVIQFARQGYKDI F YDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETD DWNLV Sbjct: 365 IKRVIQFARQGYKDIDFPIYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDSDWNLV 424 Query: 421 GRTTKKVTKTLKARDLWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYM 480 GRT KK+ KTLKARDLWEKIG+AAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYM Sbjct: 425 GRTNKKIVKTLKARDLWEKIGHAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYM 484 Query: 481 FLDDTACNLASANLLTFY 498 FLDDTACNLASANLLTFY Sbjct: 485 FLDDTACNLASANLLTFY 502 >ref|YP_001240198.1| ribonucleotide-diphosphate reductase subunit alpha [Bradyrhizobium sp. BTAi1] gb|ABQ36292.1| ribonucleoside-diphosphate reductase class II [Bradyrhizobium sp. BTAi1] Length = 1258 Score = 990 bits (2559), Expect = 0.0, Method: Compositional matrix adjust. Identities = 464/498 (93%), Positives = 480/498 (96%) Query: 1 MRIERRNTTSGQSPYAGINFRLTTSEIRNPDGSVVFRAENVEVPEFWSQVASDVLAQKYF 60 MRIERRNTT GQSPYAGI+FRLTTSEI+NPDGSVVFR ENVE+PEFWSQVASDVLAQKYF Sbjct: 5 MRIERRNTTEGQSPYAGIDFRLTTSEIKNPDGSVVFRLENVEIPEFWSQVASDVLAQKYF 64 Query: 61 RKAGVAARLKKVEEETVPSWLWRSVPDTEALAALPENERIVGETSAKQVFDRLAGCWTYW 120 RKAGVAARLKKVEEE+VPSWLWRSVPDT+ALAALPE ER E SAKQVFDRLAGCWTYW Sbjct: 65 RKAGVAARLKKVEEESVPSWLWRSVPDTDALAALPETERYGSERSAKQVFDRLAGCWTYW 124 Query: 121 GWKGGYFSTEEDALAFFDELRFQLAKQMVAPNSPQWFNTGLHWAYGVDGPGQGHYYVDWK 180 GWKG YFS+EEDA+AF+DELRF LAKQMVAPNSPQWFNTGLHWAYG+DGPGQGHYYVD+K Sbjct: 125 GWKGNYFSSEEDAVAFYDELRFMLAKQMVAPNSPQWFNTGLHWAYGIDGPGQGHYYVDYK 184 Query: 181 TGKLTKSKSAYEHPQPHACFIQGVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSSLRG 240 TGKLTKSKS+YEHPQPHACFIQGV DDLVN+GGIMDLWVREARLFKYGSGTGSNFS LRG Sbjct: 185 TGKLTKSKSSYEHPQPHACFIQGVEDDLVNDGGIMDLWVREARLFKYGSGTGSNFSRLRG 244 Query: 241 EGEKLSGGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIETYIDWKVKE 300 EGEKLSGGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIE YIDWKVKE Sbjct: 245 EGEKLSGGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEAYIDWKVKE 304 Query: 301 EQKVAALVTGSKINQKHLKAVMKACVNCEGSGDDCFDPEKNPALRREIKLARRNLVPDNY 360 EQKVAALVTGSKINQKHLKAVMKACVNCEGSGDDCFDPEKNPALRREIKLARR LVPDNY Sbjct: 305 EQKVAALVTGSKINQKHLKAVMKACVNCEGSGDDCFDPEKNPALRREIKLARRALVPDNY 364 Query: 361 IKRVIQFARQGYKDIQFDTYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGDWNLV 420 IKRVIQFA+QGYKDI F YDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGDW+L+ Sbjct: 365 IKRVIQFAKQGYKDIDFPIYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGDWSLI 424 Query: 421 GRTTKKVTKTLKARDLWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYM 480 GRT KKV KTLKARDLWEKIG+AAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYM Sbjct: 425 GRTNKKVVKTLKARDLWEKIGHAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYM 484 Query: 481 FLDDTACNLASANLLTFY 498 FLDDTACNLASANLLTFY Sbjct: 485 FLDDTACNLASANLLTFY 502 >ref|YP_318184.1| ribonucleotide-diphosphate reductase subunit alpha [Nitrobacter winogradskyi Nb-255] gb|ABA04832.1| ribonucleoside-diphosphate reductase class II [Nitrobacter winogradskyi Nb-255] Length = 1265 Score = 983 bits (2540), Expect = 0.0, Method: Compositional matrix adjust. Identities = 460/498 (92%), Positives = 480/498 (96%) Query: 1 MRIERRNTTSGQSPYAGINFRLTTSEIRNPDGSVVFRAENVEVPEFWSQVASDVLAQKYF 60 MR ERR TT GQSPYAGI+FRLTTSEIRNPDGSVVFR ENVEVPEFWSQVASDVLAQKYF Sbjct: 1 MRFERRYTTDGQSPYAGIDFRLTTSEIRNPDGSVVFRLENVEVPEFWSQVASDVLAQKYF 60 Query: 61 RKAGVAARLKKVEEETVPSWLWRSVPDTEALAALPENERIVGETSAKQVFDRLAGCWTYW 120 RKAGVAARLKKVEEETVPSWLWRSVPDT+ALAALPE+ERIVGETSAKQVFDRLAGCWTYW Sbjct: 61 RKAGVAARLKKVEEETVPSWLWRSVPDTDALAALPESERIVGETSAKQVFDRLAGCWTYW 120 Query: 121 GWKGGYFSTEEDALAFFDELRFQLAKQMVAPNSPQWFNTGLHWAYGVDGPGQGHYYVDWK 180 GWKGGYF++E+DA AF DELR LA+QMVAPNSPQWFNTGLHWAYG+DGPGQGHYYVD+K Sbjct: 121 GWKGGYFTSEDDARAFHDELRCMLARQMVAPNSPQWFNTGLHWAYGIDGPGQGHYYVDFK 180 Query: 181 TGKLTKSKSAYEHPQPHACFIQGVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSSLRG 240 TGKLT+SKS+YEHPQPHACFIQG+ DDLVNEGGIMDLWVREARLFKYGSGTGSNFS LRG Sbjct: 181 TGKLTRSKSSYEHPQPHACFIQGIEDDLVNEGGIMDLWVREARLFKYGSGTGSNFSRLRG 240 Query: 241 EGEKLSGGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIETYIDWKVKE 300 EGE+LSGGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIE YIDWKVKE Sbjct: 241 EGERLSGGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIEQYIDWKVKE 300 Query: 301 EQKVAALVTGSKINQKHLKAVMKACVNCEGSGDDCFDPEKNPALRREIKLARRNLVPDNY 360 EQKVAALVTGS+INQKHLKAVM+ACVNCEGSGDDCF PEKNPALRREIKLARR VPDNY Sbjct: 301 EQKVAALVTGSRINQKHLKAVMRACVNCEGSGDDCFLPEKNPALRREIKLARRAQVPDNY 360 Query: 361 IKRVIQFARQGYKDIQFDTYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGDWNLV 420 IKRVIQFARQGYK+I F YDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGDWNL+ Sbjct: 361 IKRVIQFARQGYKEIDFPVYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGDWNLI 420 Query: 421 GRTTKKVTKTLKARDLWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYM 480 GRT +KVTKTLKAR+LWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYM Sbjct: 421 GRTNRKVTKTLKARELWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYM 480 Query: 481 FLDDTACNLASANLLTFY 498 FLDDTACNLASANL+TFY Sbjct: 481 FLDDTACNLASANLITFY 498 >ref|NP_770914.1| ribonucleotide-diphosphate reductase subunit alpha [Bradyrhizobium japonicum USDA 110] sp|Q89MB9.1|NRDJ_BRAJA RecName: Full=Vitamin B12-dependent ribonucleotide reductase; AltName: Full=Ribonucleoside-diphosphate reductase nrdJ dbj|BAC49539.1| ribonucleoside-diphosphate reductase 2 alpha chain [Bradyrhizobium japonicum USDA 110] Length = 1254 Score = 983 bits (2540), Expect = 0.0, Method: Compositional matrix adjust. Identities = 462/498 (92%), Positives = 479/498 (96%) Query: 1 MRIERRNTTSGQSPYAGINFRLTTSEIRNPDGSVVFRAENVEVPEFWSQVASDVLAQKYF 60 MRIERR+TT+GQSPYAGI+FRLTTSEIRNPDGSVVF+ +NVEVP WSQVASDVLAQKYF Sbjct: 1 MRIERRHTTTGQSPYAGIDFRLTTSEIRNPDGSVVFKLDNVEVPTEWSQVASDVLAQKYF 60 Query: 61 RKAGVAARLKKVEEETVPSWLWRSVPDTEALAALPENERIVGETSAKQVFDRLAGCWTYW 120 RKAGVAARLKKVEEE+VPS+LWRSVPDTEAL+ LPE ER V E SAKQVFDRLAGCWTYW Sbjct: 61 RKAGVAARLKKVEEESVPSFLWRSVPDTEALSQLPEKERYVSELSAKQVFDRLAGCWTYW 120 Query: 121 GWKGGYFSTEEDALAFFDELRFQLAKQMVAPNSPQWFNTGLHWAYGVDGPGQGHYYVDWK 180 GWKGGYF+ +EDA AF+DELR+ LA QMVAPNSPQWFNTGLHWAYG+DGPGQGHYYVD Sbjct: 121 GWKGGYFTNDEDAQAFYDELRYMLAMQMVAPNSPQWFNTGLHWAYGIDGPGQGHYYVDPF 180 Query: 181 TGKLTKSKSAYEHPQPHACFIQGVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSSLRG 240 TGKLTKSKSAYEHPQPHACFIQGVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFS LRG Sbjct: 181 TGKLTKSKSAYEHPQPHACFIQGVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSRLRG 240 Query: 241 EGEKLSGGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIETYIDWKVKE 300 EGEKLSGGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVD DHPDIETYIDWKVKE Sbjct: 241 EGEKLSGGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDVDHPDIETYIDWKVKE 300 Query: 301 EQKVAALVTGSKINQKHLKAVMKACVNCEGSGDDCFDPEKNPALRREIKLARRNLVPDNY 360 EQKVAALVTGSKINQKHLKAV+KACVNCEGSGDDCFDPEKNPALRREIKLARR+LVPDNY Sbjct: 301 EQKVAALVTGSKINQKHLKAVLKACVNCEGSGDDCFDPEKNPALRREIKLARRSLVPDNY 360 Query: 361 IKRVIQFARQGYKDIQFDTYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGDWNLV 420 IKRVIQFA+QGYKDIQFD YDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGDWNL Sbjct: 361 IKRVIQFAKQGYKDIQFDVYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGDWNLN 420 Query: 421 GRTTKKVTKTLKARDLWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYM 480 RT+KKVTKTLKARDLWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYM Sbjct: 421 ARTSKKVTKTLKARDLWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYM 480 Query: 481 FLDDTACNLASANLLTFY 498 FLDDTACNLASANLLTFY Sbjct: 481 FLDDTACNLASANLLTFY 498 >ref|ZP_08630088.1| coenzyme B12-dependent class II ribonucleotide reductase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07182.1| coenzyme B12-dependent class II ribonucleotide reductase [Bradyrhizobiaceae bacterium SG-6C] Length = 1250 Score = 980 bits (2533), Expect = 0.0, Method: Compositional matrix adjust. Identities = 463/498 (92%), Positives = 475/498 (95%) Query: 1 MRIERRNTTSGQSPYAGINFRLTTSEIRNPDGSVVFRAENVEVPEFWSQVASDVLAQKYF 60 MRIERR T + QSPYA I+FRLTTSEIRNPDGSVVFR ENVEVPEFWSQVASDVLAQKYF Sbjct: 1 MRIERRYTKADQSPYAAIDFRLTTSEIRNPDGSVVFRLENVEVPEFWSQVASDVLAQKYF 60 Query: 61 RKAGVAARLKKVEEETVPSWLWRSVPDTEALAALPENERIVGETSAKQVFDRLAGCWTYW 120 RKAGVAARLKKVEEETVPSWLWRSVPDTEALA+LPE+ER GE S+KQVFDRLAGCWTYW Sbjct: 61 RKAGVAARLKKVEEETVPSWLWRSVPDTEALASLPESERFTGEHSSKQVFDRLAGCWTYW 120 Query: 121 GWKGGYFSTEEDALAFFDELRFQLAKQMVAPNSPQWFNTGLHWAYGVDGPGQGHYYVDWK 180 GWKGGYFS+EEDA AF DELRF LA+QMVAPNSPQWFNTGLHWAYGVDGPGQGHYYVD Sbjct: 121 GWKGGYFSSEEDARAFHDELRFMLARQMVAPNSPQWFNTGLHWAYGVDGPGQGHYYVDPF 180 Query: 181 TGKLTKSKSAYEHPQPHACFIQGVGDDLVNEGGIMDLWVREARLFKYGSGTGSNFSSLRG 240 TGKL KSKS+YEHPQPHACFIQGV DDLVNEGGIMDLWVREARLFKYGSGTGSNFS LRG Sbjct: 181 TGKLVKSKSSYEHPQPHACFIQGVNDDLVNEGGIMDLWVREARLFKYGSGTGSNFSRLRG 240 Query: 241 EGEKLSGGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIETYIDWKVKE 300 EGEKLSGGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIETYIDWKVKE Sbjct: 241 EGEKLSGGGRSSGLMSFLKIGDRAAGAIKSGGTTRRAAKMVVVDADHPDIETYIDWKVKE 300 Query: 301 EQKVAALVTGSKINQKHLKAVMKACVNCEGSGDDCFDPEKNPALRREIKLARRNLVPDNY 360 EQKVAALVTGSKINQKHLKAVMKACVNCEGSGDDCFDPEKNPALRREIK ARR +V DN Sbjct: 301 EQKVAALVTGSKINQKHLKAVMKACVNCEGSGDDCFDPEKNPALRREIKFARRAMVQDNL 360 Query: 361 IKRVIQFARQGYKDIQFDTYDTDWDSEAYLTVSGQNSNNSVSLKDDFLRAVETDGDWNLV 420 IKRVIQFA+QGY DI FDTYDTDWDSEAYLTV+GQNSNNSVSLKDDFLRAVETDGDWNL+ Sbjct: 361 IKRVIQFAKQGYTDISFDTYDTDWDSEAYLTVAGQNSNNSVSLKDDFLRAVETDGDWNLI 420 Query: 421 GRTTKKVTKTLKARDLWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYM 480 GRT KKVTKTLKARDLWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYM Sbjct: 421 GRTNKKVTKTLKARDLWEKIGYAAWASADPGLHFNTTMNDWHTCKASGDIRASNPCSEYM 480 Query: 481 FLDDTACNLASANLLTFY 498 FLDDTACNLASANLLTFY Sbjct: 481 FLDDTACNLASANLLTFY 498