BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0118.0030.p (340 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770916.1| two-component hybrid sensor and regulator [Brad... 402 e-110 ref|YP_780714.1| multi-sensor hybrid histidine kinase [Rhodopseu... 386 e-105 ref|YP_531560.1| multi-sensor hybrid histidine kinase [Rhodopseu... 379 e-103 ref|YP_001205486.1| sensor histidine kinase [Bradyrhizobium sp. ... 366 3e-99 ref|YP_001208913.1| sensor histidine kinase [Bradyrhizobium sp. ... 366 4e-99 >ref|NP_770916.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC49541.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 698 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 188/263 (71%), Positives = 221/263 (84%) Query: 77 SVHIDPSQLANSLLNMAINARDAMPNGGKLLFETSNIVLDDAYAAVNPDITPGRYVLLAV 136 + HIDPS+L N++LNMAINARDAMPNGGKLL ET +VLD AYA N D+ PG YV+LAV Sbjct: 430 TAHIDPSRLTNAVLNMAINARDAMPNGGKLLLETHRVVLDGAYAQANADVVPGPYVMLAV 489 Query: 137 SDTGTGMSHAVQDKVFEPFFTTKEVGKGSGLGMSMVYGFVKQSGGHIKIYSEEGHGTTIK 196 SDTGTGM +Q+K FEPFFTTKEVGKGSGLG+SMVYGFVKQSGGHIKIYSEEGHGTTIK Sbjct: 490 SDTGTGMPLDIQEKAFEPFFTTKEVGKGSGLGLSMVYGFVKQSGGHIKIYSEEGHGTTIK 549 Query: 197 LYLPPARGQVEVEAPAPEPVRRGSEVILVVEDDQLVRNYVVTQLGSLGYKTIAVPDARAA 256 LYLPP G EV A G+E+I VVEDD LVRN+V QL SLGY+T+A PD+RAA Sbjct: 550 LYLPPGEGMAEVAATVAPQAEGGAEIIFVVEDDPLVRNFVTAQLQSLGYQTVAAPDSRAA 609 Query: 257 LALVDKGEKFDLLFTDVIMPGGMNGRQLADEVQKRRPGIKVLYTSGYTENAIVHHGRLDE 316 L ++ G+ FDLLFTDV++PGGM+GR+LA+EV +RRPG+KVLYTSGYT+NAIVHHG+LD+ Sbjct: 610 LQAIEAGQAFDLLFTDVVIPGGMSGRELAEEVARRRPGLKVLYTSGYTDNAIVHHGKLDD 669 Query: 317 GVLLLAKPYRKAQLAGMLQQALG 339 GVLLL KPYR+ QLA M+++ALG Sbjct: 670 GVLLLTKPYRRNQLAEMIRKALG 692 >ref|YP_780714.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] gb|ABJ05734.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisA53] Length = 931 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 188/270 (69%), Positives = 217/270 (80%), Gaps = 1/270 (0%) Query: 69 AVLAPDVASVHIDPSQLANSLLNMAINARDAMPNGGKLLFETSNIVLDDAYAAVNPDITP 128 ++L D H+DPSQL+ +LLN+A+NARDAMP GGKL ETSN+VLD+AYA NP P Sbjct: 638 SMLGNDAEPAHVDPSQLSTALLNLAVNARDAMPGGGKLTLETSNVVLDEAYAHNNPGAQP 697 Query: 129 GRYVLLAVSDTGTGMSHAVQDKVFEPFFTTKEVGKGSGLGMSMVYGFVKQSGGHIKIYSE 188 G YV++AVSDTGTG++ + +DKVFEPFFTTKEVGKG+GLG+SMVYGFV QS GHIKIYSE Sbjct: 698 GAYVMIAVSDTGTGIAASARDKVFEPFFTTKEVGKGTGLGLSMVYGFVNQSNGHIKIYSE 757 Query: 189 EGHGTTIKLYLPPARGQVEVEAPAPEPVRRGSEVILVVEDDQLVRNYVVTQLGSLGYKTI 248 EG+GTTIKLYLP A Q E+ P EP+ G+E ILVVEDD +VRN+VV QL SLGY+T Sbjct: 758 EGYGTTIKLYLPRADAQAEM-LPVAEPIEGGTETILVVEDDAMVRNFVVAQLRSLGYRTY 816 Query: 249 AVPDARAALALVDKGEKFDLLFTDVIMPGGMNGRQLADEVQKRRPGIKVLYTSGYTENAI 308 AAL VD G FDLLFTDVIMPGGMNGRQLAD V +RRPGIKVLYTSGYTENAI Sbjct: 817 TAASGAAALTEVDSGASFDLLFTDVIMPGGMNGRQLADAVLQRRPGIKVLYTSGYTENAI 876 Query: 309 VHHGRLDEGVLLLAKPYRKAQLAGMLQQAL 338 VHHGRLD GV LL KPYRK++LA M++ AL Sbjct: 877 VHHGRLDAGVFLLPKPYRKSELARMVRAAL 906 >ref|YP_531560.1| multi-sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] gb|ABD87241.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris BisB18] Length = 926 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 184/270 (68%), Positives = 220/270 (81%), Gaps = 2/270 (0%) Query: 69 AVLAPDVASVHIDPSQLANSLLNMAINARDAMPNGGKLLFETSNIVLDDAYAAVNPDITP 128 ++L D HIDPSQL+ +LLN+A+NARDAMPNGGKL ET N+VLD+ YA NP++TP Sbjct: 639 SMLGNDAEPAHIDPSQLSTALLNLAVNARDAMPNGGKLTLETGNVVLDETYAHANPEVTP 698 Query: 129 GRYVLLAVSDTGTGMSHAVQDKVFEPFFTTKEVGKGSGLGMSMVYGFVKQSGGHIKIYSE 188 G YV++AVSD+GTG+S A+ DKVFEPFFTTK+VGKG+GLG+SMVYGFVKQS GHIKIYSE Sbjct: 699 GPYVMIAVSDSGTGISAAILDKVFEPFFTTKDVGKGTGLGLSMVYGFVKQSNGHIKIYSE 758 Query: 189 EGHGTTIKLYLPPARGQVEVEAPAPEPVRRGSEVILVVEDDQLVRNYVVTQLGSLGYKTI 248 EG+GTTIKLYLP A E AP P++ GSE +LVVEDD +VRN+VVTQL SLGYKT+ Sbjct: 759 EGYGTTIKLYLPRASADAEELAPT-APIKGGSETVLVVEDDAMVRNFVVTQLRSLGYKTL 817 Query: 249 AVPDARAALALVDKGEKFDLLFTDVIMPGGMNGRQLADEVQKRRPGIKVLYTSGYTENAI 308 + LA +D G FDLLFTDVIMP G+NGRQLA+ V++RRP KVLYTSGYTENAI Sbjct: 818 TAANGAETLAQIDAGATFDLLFTDVIMP-GLNGRQLAEAVKQRRPATKVLYTSGYTENAI 876 Query: 309 VHHGRLDEGVLLLAKPYRKAQLAGMLQQAL 338 VHHGRLD GVLLL KPYRK++LA +++ AL Sbjct: 877 VHHGRLDPGVLLLPKPYRKSELARLIRAAL 906 >ref|YP_001205486.1| sensor histidine kinase [Bradyrhizobium sp. ORS 278] emb|CAL77260.1| putative sensor histidine kinase with a CHASE3 and a response regulator receiver domain; peptide signal [Bradyrhizobium sp. ORS 278] Length = 761 Score = 366 bits (940), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 175/270 (64%), Positives = 213/270 (78%) Query: 69 AVLAPDVASVHIDPSQLANSLLNMAINARDAMPNGGKLLFETSNIVLDDAYAAVNPDITP 128 ++L + HID +QLANSL+NMAINARDAMPNGGKLL E+ + LDDAYAA N +TP Sbjct: 474 SILEEETLIAHIDSAQLANSLVNMAINARDAMPNGGKLLLESRRVELDDAYAAANAGVTP 533 Query: 129 GRYVLLAVSDTGTGMSHAVQDKVFEPFFTTKEVGKGSGLGMSMVYGFVKQSGGHIKIYSE 188 G Y+++AVSDTGTGMS AV+D+ FEPFFTTKE GKGSGLG+SMVYGFVKQSGGHIKIYSE Sbjct: 534 GSYIMVAVSDTGTGMSPAVRDRAFEPFFTTKEAGKGSGLGLSMVYGFVKQSGGHIKIYSE 593 Query: 189 EGHGTTIKLYLPPARGQVEVEAPAPEPVRRGSEVILVVEDDQLVRNYVVTQLGSLGYKTI 248 EG GTTI+LY+P +GQ A P RG E I +VEDD LV+++VV QL SLGYKT+ Sbjct: 594 EGRGTTIRLYIPAPKGQTATPALPDPPPPRGDETIFIVEDDLLVQDFVVAQLQSLGYKTM 653 Query: 249 AVPDARAALALVDKGEKFDLLFTDVIMPGGMNGRQLADEVQKRRPGIKVLYTSGYTENAI 308 ALA ++ G+ FDLLFTDVIMPGG+NG++LA+E ++RPG KVLYTSGYT+NA+ Sbjct: 654 TASTGVEALAKIESGQPFDLLFTDVIMPGGVNGKELAEETLRQRPGTKVLYTSGYTDNAM 713 Query: 309 VHHGRLDEGVLLLAKPYRKAQLAGMLQQAL 338 V HGR+D LLL KPYRK++LA M++ AL Sbjct: 714 VEHGRIDHASLLLTKPYRKSELAQMVRLAL 743 >ref|YP_001208913.1| sensor histidine kinase [Bradyrhizobium sp. ORS 278] emb|CAL80698.1| putative sensor histidine kinase with a response regulator receiver domain [Bradyrhizobium sp. ORS 278] Length = 527 Score = 366 bits (939), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 178/274 (64%), Positives = 212/274 (77%), Gaps = 4/274 (1%) Query: 69 AVLAPDVASVHIDPSQLANSLLNMAINARDAMPNGGKLLFETSNIVLDDAYAAVNPDITP 128 ++LA D A IDPSQL+ ++LN+A+NARDAMPNGGKL ET N++LDDAYA +NP++ P Sbjct: 254 SMLAHDSAPAMIDPSQLSTAILNLALNARDAMPNGGKLTLETKNVLLDDAYARMNPEVIP 313 Query: 129 GRYVLLAVSDTGTGMSHAVQDKVFEPFFTTKEVGKGSGLGMSMVYGFVKQSGGHIKIYSE 188 G YV++AVSDTG G+ + DKVFEPFFTTK+VGKG GLG+SMVYGFVKQS GHIKIYSE Sbjct: 314 GNYVMIAVSDTGEGIPSNLLDKVFEPFFTTKDVGKGVGLGLSMVYGFVKQSNGHIKIYSE 373 Query: 189 EGHGTTIKLYLPPARGQVEV---EAPAPEPVRRGSEVILVVEDDQLVRNYVVTQLGSLGY 245 GHGT++KLYLP A +V EA + RG E IL+VEDD LVR YV+ Q+ LGY Sbjct: 374 PGHGTSVKLYLPQATADADVLLLEASLAS-MERGDETILIVEDDSLVREYVIAQIKRLGY 432 Query: 246 KTIAVPDARAALALVDKGEKFDLLFTDVIMPGGMNGRQLADEVQKRRPGIKVLYTSGYTE 305 T+A A AL+L+D + DLLFTD+IMPGGMNGRQLA E KRRP +KVLYTSGYTE Sbjct: 433 TTLAASKADEALSLIDSPARIDLLFTDIIMPGGMNGRQLAIEALKRRPNLKVLYTSGYTE 492 Query: 306 NAIVHHGRLDEGVLLLAKPYRKAQLAGMLQQALG 339 NAIVHHGRLD GVLLL KPY+ A LA M++ AL Sbjct: 493 NAIVHHGRLDAGVLLLTKPYQSADLARMIRTALN 526