BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0118.0026.p (288 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774452.1| RNA polymerase sigma factor [Bradyrhizobium jap... 419 e-115 ref|ZP_07025347.1| RNA polymerase, sigma-24 subunit, ECF subfami... 385 e-105 ref|YP_002287944.1| RNA polymerase sigma factor [Oligotropha car... 378 e-103 ref|YP_771452.1| putative alternative RNA polymerase sigma facto... 353 1e-95 ref|YP_002984705.1| RNA polymerase, sigma-24 subunit, ECF subfam... 352 3e-95 >ref|NP_774452.1| RNA polymerase sigma factor [Bradyrhizobium japonicum USDA 110] dbj|BAC53077.1| blr7812 [Bradyrhizobium japonicum USDA 110] Length = 289 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 218/285 (76%), Positives = 243/285 (85%), Gaps = 2/285 (0%) Query: 3 EKNSLTEQFEANRPRLRAVAYRMLGSTAEVDDAVQETWLRLGRTDAAAVDNLGGWLTTVI 62 E++ L++QFEANR LRAVAYRMLGS E+DDAVQE WLRL R+D + V NL GWLTTV+ Sbjct: 7 EEDFLSQQFEANRDHLRAVAYRMLGSRGEIDDAVQEAWLRLSRSDTSDVANLRGWLTTVV 66 Query: 63 ARICLDMLRSRKSRREEPIGPHVPEPIADNPSERETEMADSVGAALLVVLETLAPAERLA 122 ARICLDMLR+RKSRRE+P+GPHVPEP+ D ERE EMADSVGAALL+VLETL PAERLA Sbjct: 67 ARICLDMLRARKSRREDPMGPHVPEPV-DETREREAEMADSVGAALLIVLETLQPAERLA 125 Query: 123 FVLHDMFAVPFEEIAPIVGRTPAAARQLASRARRRVQGTPPAPDADLSRQRGIVEAFLAA 182 FVLHDMFAVPFEEIAPIVGR+ A+RQLASRARRRVQG P P+ DLSRQR IV+AFLAA Sbjct: 126 FVLHDMFAVPFEEIAPIVGRSVDASRQLASRARRRVQGAP-VPETDLSRQRKIVDAFLAA 184 Query: 183 SRNGDFXGLLAVLAPDVVVRADQAAQRLGSLPVIRGAAAVAESFKGRAQAAKPALVDGEI 242 SR G+F GLLAVL PDVV RADQAA RLG+LP IRGA AVA+ +KGRAQAA+ ALVDGEI Sbjct: 185 SREGNFEGLLAVLDPDVVFRADQAAVRLGTLPEIRGADAVAKLYKGRAQAARTALVDGEI 244 Query: 243 GVAVIFGGALRIVLRVTISGDRIAAIDATADASEIETFDVEVLER 287 GVAVI GG LRI LRVT SGDRIAAI+A ADA I + +VEVLER Sbjct: 245 GVAVILGGQLRIALRVTFSGDRIAAIEAVADAEAIASLEVEVLER 289 >ref|ZP_07025347.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Afipia sp. 1NLS2] gb|EFI52489.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Afipia sp. 1NLS2] Length = 290 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/291 (68%), Positives = 233/291 (80%), Gaps = 7/291 (2%) Query: 1 MDEKNSLTEQFEANRPRLRAVAYRMLGSTAEVDDAVQETWLRLGRTDAAAVDNLGGWLTT 60 M E+N L E+FEANR LRAVAYRMLGS +E +DAVQE WLRLGR D + NLGGWLTT Sbjct: 1 MSEQNFLAERFEANRAHLRAVAYRMLGSRSEAEDAVQEAWLRLGRADTNEIKNLGGWLTT 60 Query: 61 VIARICLDMLRSRKSRREEPIGPHVPEPIADNPSERETEMADSVGAALLVVLETLAPAER 120 V+ARICLDMLR+RKSRREE +GPHVPEP ADN + E E+ADS+GAALL+VL+TL+PAER Sbjct: 61 VVARICLDMLRARKSRREEQLGPHVPEP-ADNENG-EQEIADSIGAALLIVLDTLSPAER 118 Query: 121 LAFVLHDMFAVPFEEIAPIVGRTPAAARQLASRARRRVQGTP-----PAPDADLSRQRGI 175 LAFVLHDMFAVPFE+IAPIVGR PAAARQLASRARRRVQG P+ADLSRQR I Sbjct: 119 LAFVLHDMFAVPFEDIAPIVGRQPAAARQLASRARRRVQGASAKPEVETPEADLSRQRVI 178 Query: 176 VEAFLAASRNGDFXGLLAVLAPDVVVRADQAAQRLGSLPVIRGAAAVAESFKGRAQAAKP 235 V+AFLAAS+NGDF LL+VL P+VV R+D A ++G +RGA AVA +FKGRAQAA+P Sbjct: 179 VDAFLAASKNGDFEALLSVLDPEVVFRSDAVAAKMGGAVELRGAEAVANTFKGRAQAAQP 238 Query: 236 ALVDGEIGVAVIFGGALRIVLRVTISGDRIAAIDATADASEIETFDVEVLE 286 A+VDG + +AV+FGG LR+VL + I GDRIA I A AD I+ FDV +L Sbjct: 239 AVVDGAMAIAVVFGGRLRLVLELRIVGDRIAGIQAVADPDRIKGFDVAILN 289 >ref|YP_002287944.1| RNA polymerase sigma factor [Oligotropha carboxidovorans OM5] ref|YP_004633939.1| RNA polymerase sigma factor protein [Oligotropha carboxidovorans OM5] gb|ACI92079.1| RNA polymerase sigma factor [Oligotropha carboxidovorans OM5] gb|AEI04068.1| putative RNA polymerase sigma factor protein [Oligotropha carboxidovorans OM4] gb|AEI07698.1| putative RNA polymerase sigma factor protein [Oligotropha carboxidovorans OM5] Length = 291 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 199/291 (68%), Positives = 228/291 (78%), Gaps = 6/291 (2%) Query: 1 MDEKNSLTEQFEANRPRLRAVAYRMLGSTAEVDDAVQETWLRLGRTDAAAVDNLGGWLTT 60 M E N L E+FEANR LRAVAYRMLGS +E +DAVQE WLRLGRTD+ + NLGGWLTT Sbjct: 1 MSENNFLAERFEANRVHLRAVAYRMLGSRSEAEDAVQEAWLRLGRTDSEDIKNLGGWLTT 60 Query: 61 VIARICLDMLRSRKSRREEPIGPHVPEPIADNPSERETEMADSVGAALLVVLETLAPAER 120 V+ARICLDMLR+RKSRREE + P PEP ADN + E E+ADSVGAALL+VL+TL+PAER Sbjct: 61 VVARICLDMLRARKSRREEQLSPLTPEPAADNENGEE-EIADSVGAALLIVLDTLSPAER 119 Query: 121 LAFVLHDMFAVPFEEIAPIVGRTPAAARQLASRARRRVQGTPPA-----PDADLSRQRGI 175 LAFVLHDMFAVPFEEIAPIVGR PAAARQLASRARRRVQG P ADLSRQR + Sbjct: 120 LAFVLHDMFAVPFEEIAPIVGREPAAARQLASRARRRVQGASAKSETEMPVADLSRQREV 179 Query: 176 VEAFLAASRNGDFXGLLAVLAPDVVVRADQAAQRLGSLPVIRGAAAVAESFKGRAQAAKP 235 V+AFLAAS+ GDF LL VL P+VV RAD A ++G +RGA AVA +FKGRAQAA+P Sbjct: 180 VDAFLAASKLGDFEALLTVLDPEVVFRADATAVKMGGPAELRGAEAVANTFKGRAQAAQP 239 Query: 236 ALVDGEIGVAVIFGGALRIVLRVTISGDRIAAIDATADASEIETFDVEVLE 286 A+VDG + VAV+FGG LRIVL + I GDRI I A AD I+ FDV +L+ Sbjct: 240 AVVDGAMAVAVVFGGRLRIVLELRIEGDRITGIHAIADPDRIKAFDVAILD 290 >ref|YP_771452.1| putative alternative RNA polymerase sigma factor [Rhizobium leguminosarum bv. viciae 3841] emb|CAK03371.1| putative alternative RNA polymerase sigma factor [Rhizobium leguminosarum bv. viciae 3841] Length = 289 Score = 353 bits (907), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 186/287 (64%), Positives = 216/287 (75%), Gaps = 2/287 (0%) Query: 1 MDEKNSLTEQFEANRPRLRAVAYRMLGSTAEVDDAVQETWLRLGRTDAAAVDNLGGWLTT 60 MDEK L ++FEANR LRA AYRMLGS +E +DAVQE WLRL RTD V NLGGWLTT Sbjct: 1 MDEKKWLADEFEANRAHLRAAAYRMLGSRSEAEDAVQEAWLRLSRTDTTGVGNLGGWLTT 60 Query: 61 VIARICLDMLRSRKSRREEPIGPHVPEPIAD--NPSERETEMADSVGAALLVVLETLAPA 118 V+ARICLDMLR+RK+RREEP+ + IAD N ERE ADSVG ALLVVL+TLAPA Sbjct: 61 VVARICLDMLRARKTRREEPLEAPIHAGIADPANDPEREAAFADSVGLALLVVLQTLAPA 120 Query: 119 ERLAFVLHDMFAVPFEEIAPIVGRTPAAARQLASRARRRVQGTPPAPDADLSRQRGIVEA 178 ER+AFVLHDMF +PF+EIAPI+GR+ AA RQLASRARRRVQG APD D R+R I EA Sbjct: 121 ERVAFVLHDMFDLPFDEIAPIIGRSSAATRQLASRARRRVQGVDEAPDVDFGRKRTIAEA 180 Query: 179 FLAASRNGDFXGLLAVLAPDVVVRADQAAQRLGSLPVIRGAAAVAESFKGRAQAAKPALV 238 FL ASRNGD L+AVLAPDVV R D A R G++ +RGAA VAE+FKGRAQAA+ A+V Sbjct: 181 FLTASRNGDLERLIAVLAPDVVFRPDATAARFGTIGEMRGAAHVAEAFKGRAQAAEIAIV 240 Query: 239 DGEIGVAVIFGGALRIVLRVTISGDRIAAIDATADASEIETFDVEVL 285 GE+G V G LR+V+ +TI+ RIAAIDA AD +E D +L Sbjct: 241 GGELGFVVEIQGQLRVVVALTIADGRIAAIDAIADPDHLERLDYSIL 287 >ref|YP_002984705.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS59743.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 289 Score = 352 bits (904), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 188/289 (65%), Positives = 218/289 (75%), Gaps = 6/289 (2%) Query: 1 MDEKNSLTEQFEANRPRLRAVAYRMLGSTAEVDDAVQETWLRLGRTDAAAVDNLGGWLTT 60 MDEK LTE+FEANR LRA A+RMLGS +E +DAVQE WLRL RTD V NLGGWLTT Sbjct: 1 MDEKKWLTEEFEANRAHLRAAAFRMLGSRSEAEDAVQEAWLRLSRTDTTGVGNLGGWLTT 60 Query: 61 VIARICLDMLRSRKSRREEPIGPHVPEP--IAD--NPSERETEMADSVGAALLVVLETLA 116 V+ARICLDMLR+RK+RREEP+ VP+ IAD N ERE ADSVG ALLVVL+TLA Sbjct: 61 VVARICLDMLRARKTRREEPL--EVPDHGGIADPANDPEREAAFADSVGLALLVVLQTLA 118 Query: 117 PAERLAFVLHDMFAVPFEEIAPIVGRTPAAARQLASRARRRVQGTPPAPDADLSRQRGIV 176 PAER+AFVLHDMF +PF+EIAPI+GR+ AA RQLASRARRRVQG APD D +R I Sbjct: 119 PAERVAFVLHDMFDLPFDEIAPIIGRSSAATRQLASRARRRVQGVDEAPDVDFGHKRTIA 178 Query: 177 EAFLAASRNGDFXGLLAVLAPDVVVRADQAAQRLGSLPVIRGAAAVAESFKGRAQAAKPA 236 EAFL ASRNGD GL+AVLAPDVV R D A R G++ +RGA VAE+FKGRAQAA+ A Sbjct: 179 EAFLTASRNGDLEGLIAVLAPDVVFRPDATAARFGTIGEMRGATDVAEAFKGRAQAAEIA 238 Query: 237 LVDGEIGVAVIFGGALRIVLRVTISGDRIAAIDATADASEIETFDVEVL 285 +V GE+G V G LR+V+ +TI+ RIAAIDA AD +E D +L Sbjct: 239 IVGGELGFVVEIQGQLRVVVALTIADGRIAAIDAIADPEHLERLDYSIL 287