BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0118.0011.p (318 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767994.1| peptide ABC transporter permease protein [Brady... 582 e-164 ref|YP_001242747.1| oligopeptide ABC transporter substrate-bindi... 517 e-144 ref|YP_001203244.1| oligopeptide transport system permease [Brad... 517 e-144 ref|YP_002496657.1| binding-protein-dependent transport systems ... 511 e-143 ref|YP_001757229.1| binding-protein-dependent transport systems ... 509 e-142 >ref|NP_767994.1| peptide ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC46619.1| peptide ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 319 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 291/319 (91%), Positives = 306/319 (95%), Gaps = 1/319 (0%) Query: 1 MSQYILRRLMIAIPSLLGISLVLFVVLALAPGDPFSELATNPNVPPEVQAALRAKFGLDD 60 MSQY+LRRL+IAIPSLLGISLVLFVVLALAPGDPFSELATNPNVPPEV AALRAKFGLDD Sbjct: 1 MSQYVLRRLLIAIPSLLGISLVLFVVLALAPGDPFSELATNPNVPPEVAAALRAKFGLDD 60 Query: 61 PIYLRYLHWLAAMAQGDWGFSFVSRINVDTLILQRLPTTLYVIGSAQLLALLIAIPVGVY 120 PIYLRYLHWL+AMA GDWGFSFVSR+NVD LILQRLP TLYVIGSAQ+LALLIAIPVGVY Sbjct: 61 PIYLRYLHWLSAMAHGDWGFSFVSRMNVDALILQRLPATLYVIGSAQILALLIAIPVGVY 120 Query: 121 AATRPYSIFDQLANTFAFIGFSLPTFFTGILFILVFSVKLDWLPFVY-TDVPGSGIPWLL 179 AAT+PYS+FDQ+AN AF+GFSLPTFFTGILFIL+FSV LDWLPFVY +D+ +GI W+L Sbjct: 121 AATKPYSLFDQIANVLAFVGFSLPTFFTGILFILIFSVTLDWLPFVYSSDIKATGIRWVL 180 Query: 180 EMIRQAIMPVMVLGLFQAASMTRFVRSAMLDVIRLDYVTTARAKGLGQAKVIVKHVMRNA 239 EMIRQAIMPV VLGLFQAASMTRFVRSAMLDVIRLDYVTTARAKGLGQAKVIVKHVMRNA Sbjct: 181 EMIRQAIMPVAVLGLFQAASMTRFVRSAMLDVIRLDYVTTARAKGLGQAKVIVKHVMRNA 240 Query: 240 MIPVVTLIALQMPAVFGGAIVTEQIFRIPGIGSLLISSILANDTPVVMAVTFVFACLVVL 299 MIPVVTLIALQMPAVFGGAIVTEQIFRIPGIGSLLISSIL+NDTPVVMAVTFVFACLVVL Sbjct: 241 MIPVVTLIALQMPAVFGGAIVTEQIFRIPGIGSLLISSILSNDTPVVMAVTFVFACLVVL 300 Query: 300 FNLIADVLYGWLDPRISFR 318 FNLIADVLYGWLDPRIS R Sbjct: 301 FNLIADVLYGWLDPRISLR 319 >ref|YP_001242747.1| oligopeptide ABC transporter substrate-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ38841.1| Oligopeptide ABC transporter (substrate-binding protein) [Bradyrhizobium sp. BTAi1] Length = 319 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 253/319 (79%), Positives = 288/319 (90%), Gaps = 1/319 (0%) Query: 1 MSQYILRRLMIAIPSLLGISLVLFVVLALAPGDPFSELATNPNVPPEVQAALRAKFGLDD 60 M Y+LRRL++A+PSLLGISL+LFV+LALAPGDPF ELATNPNVPPEV+ ALR KFG++D Sbjct: 1 MGNYLLRRLIVAVPSLLGISLILFVLLALAPGDPFGELATNPNVPPEVREALRVKFGMND 60 Query: 61 PIYLRYLHWLAAMAQGDWGFSFVSRINVDTLILQRLPTTLYVIGSAQLLALLIAIPVGVY 120 PI LRY+ WL AM GDWGFSF SR+NVDTLILQR+PTTLYV+G+AQ+LAL +A+PVGV Sbjct: 61 PILLRYVRWLIAMMHGDWGFSFASRVNVDTLILQRIPTTLYVVGTAQILALAVALPVGVL 120 Query: 121 AATRPYSIFDQLANTFAFIGFSLPTFFTGILFILVFSVKLDWLPFVY-TDVPGSGIPWLL 179 AA RPYSIFDQ+ANTFAFIGFSLPTFFTG+L IL+FSV L WLPFVY D+ +G W Sbjct: 121 AARRPYSIFDQIANTFAFIGFSLPTFFTGLLLILIFSVNLGWLPFVYRADLQATGWQWWW 180 Query: 180 EMIRQAIMPVMVLGLFQAASMTRFVRSAMLDVIRLDYVTTARAKGLGQAKVIVKHVMRNA 239 E I+QAIMP+ VLGL+QAAS TR+VRSA+LDVI+LDYVTTARAKGL + KVIVKHV+RNA Sbjct: 181 ESIKQAIMPITVLGLYQAASYTRYVRSAVLDVIKLDYVTTARAKGLDERKVIVKHVVRNA 240 Query: 240 MIPVVTLIALQMPAVFGGAIVTEQIFRIPGIGSLLISSILANDTPVVMAVTFVFACLVVL 299 +IPVVTL+ALQMP VFGGAIVTEQIFRIPGIGSLLIS+ILANDTPV+MAVTFVFACLVVL Sbjct: 241 LIPVVTLVALQMPTVFGGAIVTEQIFRIPGIGSLLISAILANDTPVIMAVTFVFACLVVL 300 Query: 300 FNLIADVLYGWLDPRISFR 318 FNLIAD+LYGWLDPRISFR Sbjct: 301 FNLIADILYGWLDPRISFR 319 >ref|YP_001203244.1| oligopeptide transport system permease [Bradyrhizobium sp. ORS 278] emb|CAL75007.1| Oligopeptide transport system permease protein (ABC superfamily, OppBC subfamily) [Bradyrhizobium sp. ORS 278] Length = 319 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 252/319 (78%), Positives = 288/319 (90%), Gaps = 1/319 (0%) Query: 1 MSQYILRRLMIAIPSLLGISLVLFVVLALAPGDPFSELATNPNVPPEVQAALRAKFGLDD 60 M Y+LRRL++A+PSLLGISL+LFV+LALAPGDPF ELA+NPN+PPEV+ ALR KFG+DD Sbjct: 1 MGNYLLRRLIVAVPSLLGISLILFVLLALAPGDPFGELASNPNIPPEVREALRIKFGMDD 60 Query: 61 PIYLRYLHWLAAMAQGDWGFSFVSRINVDTLILQRLPTTLYVIGSAQLLALLIAIPVGVY 120 PI +RY WL AM GDWGFSF SR+NVDTLILQR+P TLYV+G+AQLLAL++AIPVGV Sbjct: 61 PIMVRYFRWLLAMLHGDWGFSFASRVNVDTLILQRIPATLYVVGTAQLLALIVAIPVGVL 120 Query: 121 AATRPYSIFDQLANTFAFIGFSLPTFFTGILFILVFSVKLDWLPFVY-TDVPGSGIPWLL 179 AA RPYSIFDQ+ANTFAFIGFSLPTFFTG+L ILVFSV L WLPFVY D+P +G W Sbjct: 121 AARRPYSIFDQIANTFAFIGFSLPTFFTGLLLILVFSVNLGWLPFVYRADIPATGWIWWW 180 Query: 180 EMIRQAIMPVMVLGLFQAASMTRFVRSAMLDVIRLDYVTTARAKGLGQAKVIVKHVMRNA 239 E +QA+MPV VLGL+QAAS TR+VRSA+LDVI+LDYVTTAR+KGL ++KVIVKHV+RNA Sbjct: 181 ENFKQAVMPVTVLGLYQAASYTRYVRSAVLDVIKLDYVTTARSKGLDESKVIVKHVVRNA 240 Query: 240 MIPVVTLIALQMPAVFGGAIVTEQIFRIPGIGSLLISSILANDTPVVMAVTFVFACLVVL 299 +IPVVTL+ALQMP VFGGAIVTEQIFRIPGIGSLLIS+ILANDTPV+MAVTFVFACLVVL Sbjct: 241 LIPVVTLVALQMPTVFGGAIVTEQIFRIPGIGSLLISAILANDTPVIMAVTFVFACLVVL 300 Query: 300 FNLIADVLYGWLDPRISFR 318 FNLIAD+LYGWLDPRISFR Sbjct: 301 FNLIADILYGWLDPRISFR 319 >ref|YP_002496657.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium nodulans ORS 2060] gb|ACL56354.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium nodulans ORS 2060] Length = 319 Score = 511 bits (1316), Expect = e-143, Method: Compositional matrix adjust. Identities = 248/319 (77%), Positives = 289/319 (90%), Gaps = 1/319 (0%) Query: 1 MSQYILRRLMIAIPSLLGISLVLFVVLALAPGDPFSELATNPNVPPEVQAALRAKFGLDD 60 M Y+LRRL+IAIPSL+GISL+LF VLALAPGDPF ELATNPNVPPEV+AALR KFGLDD Sbjct: 1 MGAYLLRRLLIAIPSLIGISLILFTVLALAPGDPFGELATNPNVPPEVRAALRTKFGLDD 60 Query: 61 PIYLRYLHWLAAMAQGDWGFSFVSRINVDTLILQRLPTTLYVIGSAQLLALLIAIPVGVY 120 PI +RYLHWLAAM +GDWGFSF SRI+VD LILQRLPTTL+V+GS+Q+LALLIA+PVG+ Sbjct: 61 PILVRYLHWLAAMLRGDWGFSFASRIDVDVLILQRLPTTLFVVGSSQVLALLIALPVGIL 120 Query: 121 AATRPYSIFDQLANTFAFIGFSLPTFFTGILFILVFSVKLDWLPFVYT-DVPGSGIPWLL 179 AA RPYS+ DQ+ANT AF+GFSLPTFFTG+LFIL+FS+KLDWLPFVY D+ +G W Sbjct: 121 AALRPYSLLDQVANTLAFVGFSLPTFFTGLLFILLFSLKLDWLPFVYNADIAATGWRWYW 180 Query: 180 EMIRQAIMPVMVLGLFQAASMTRFVRSAMLDVIRLDYVTTARAKGLGQAKVIVKHVMRNA 239 E +RQAIMP+ VLGLFQAAS TR+VR+++LDV RLDYVTTARAKGL + V ++H+ RNA Sbjct: 181 EHVRQAIMPIAVLGLFQAASYTRYVRASVLDVARLDYVTTARAKGLSERVVTLRHIARNA 240 Query: 240 MIPVVTLIALQMPAVFGGAIVTEQIFRIPGIGSLLISSILANDTPVVMAVTFVFACLVVL 299 +IPVVTL+ALQ+PAVFGGAIVTEQIFR+PGIGSLLI+++LANDTPVVMAVTFVFACLVVL Sbjct: 241 LIPVVTLVALQIPAVFGGAIVTEQIFRVPGIGSLLINAMLANDTPVVMAVTFVFACLVVL 300 Query: 300 FNLIADVLYGWLDPRISFR 318 FNL+AD+LYGWLDPRISFR Sbjct: 301 FNLVADLLYGWLDPRISFR 319 >ref|YP_001757229.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium radiotolerans JCM 2831] gb|ACB26546.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium radiotolerans JCM 2831] Length = 319 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 250/319 (78%), Positives = 285/319 (89%), Gaps = 1/319 (0%) Query: 1 MSQYILRRLMIAIPSLLGISLVLFVVLALAPGDPFSELATNPNVPPEVQAALRAKFGLDD 60 M YILRRL+IAIPSLLGISL+LF VLALAPGDPF ELA+NPNVPPEV+AALR KFGLDD Sbjct: 1 MGAYILRRLLIAIPSLLGISLILFTVLALAPGDPFGELASNPNVPPEVRAALRVKFGLDD 60 Query: 61 PIYLRYLHWLAAMAQGDWGFSFVSRINVDTLILQRLPTTLYVIGSAQLLALLIAIPVGVY 120 PI RYLHWL AM QGDWGFSF SR+NVDTLILQRLPTTL+V+GS+Q+LALLIAIPVG+ Sbjct: 61 PILTRYLHWLTAMLQGDWGFSFASRVNVDTLILQRLPTTLFVVGSSQVLALLIAIPVGLT 120 Query: 121 AATRPYSIFDQLANTFAFIGFSLPTFFTGILFILVFSVKLDWLPFVY-TDVPGSGIPWLL 179 AA RPYS+ DQ+ANT AF+GFSLPTFFTG+LFIL+FS+KL WLPFVY D+PGSG+PW+ Sbjct: 121 AARRPYSLADQVANTLAFVGFSLPTFFTGLLFILLFSIKLGWLPFVYQADLPGSGLPWIW 180 Query: 180 EMIRQAIMPVMVLGLFQAASMTRFVRSAMLDVIRLDYVTTARAKGLGQAKVIVKHVMRNA 239 +RQAIMPV VLG FQAAS TR+VR++ LDV RLDYVTTARAKGL + V +H+ RNA Sbjct: 181 ANVRQAIMPVAVLGFFQAASYTRYVRASALDVARLDYVTTARAKGLTEGTVTRRHIARNA 240 Query: 240 MIPVVTLIALQMPAVFGGAIVTEQIFRIPGIGSLLISSILANDTPVVMAVTFVFACLVVL 299 +IPVVTL+ALQ+PAVFGGAIVTEQIFRIPGIGSLLI ++LANDTPVVMAVTFVFA LV+L Sbjct: 241 LIPVVTLVALQIPAVFGGAIVTEQIFRIPGIGSLLIDAMLANDTPVVMAVTFVFAGLVIL 300 Query: 300 FNLIADVLYGWLDPRISFR 318 FNL+AD+LYGWLDPRI+ R Sbjct: 301 FNLVADLLYGWLDPRIALR 319