BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0118.0009.p (222 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767995.1| peptide ABC transporter permease protein [Brady... 365 2e-99 ref|YP_001203245.1| oligopeptide ABC transporter membrane protei... 321 4e-86 ref|YP_002496656.1| binding-protein-dependent transport systems ... 312 2e-83 ref|YP_001242746.1| oligopeptide ABC transporter permease [Brady... 311 3e-83 ref|YP_001767874.1| binding-protein-dependent transport systems ... 311 5e-83 >ref|NP_767995.1| peptide ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC46620.1| peptide ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 305 Score = 365 bits (938), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 209/222 (94%), Positives = 217/222 (97%) Query: 1 LLAGIIYERRISLAVGLAAMLVSVFVGTLIGALAGMSRGALGYALMWLTDLFLSLPQLPL 60 +LA +IY RISLAVGLAAMLVSVFVGTLIGALAGMSRGA+G+ LMWLTDLFLSLPQLPL Sbjct: 84 ILARMIYGGRISLAVGLAAMLVSVFVGTLIGALAGMSRGAVGHGLMWLTDLFLSLPQLPL 143 Query: 61 LLMLIYLFRDGLKAMFGPEGGIFILIVLVIGGLRWMPVARLVRAQFLSLREKEFVEAARA 120 LL+LIYLFRDGLKA FGPEGGIFILIVLVIGGLRWMPVARLVRAQFLS+REKEFVEAARA Sbjct: 144 LLLLIYLFRDGLKAAFGPEGGIFILIVLVIGGLRWMPVARLVRAQFLSIREKEFVEAARA 203 Query: 121 LGASPVRQVVRHILPNALGPVIIAGTIDVAAAIIAESTLSFLGLGFPPDTPTWGRILYDA 180 LGASPVRQVVRHILPNALGPVIIAGTIDVAAAIIAESTLSFLGLGFPPDTPTWGR+LYDA Sbjct: 204 LGASPVRQVVRHILPNALGPVIIAGTIDVAAAIIAESTLSFLGLGFPPDTPTWGRLLYDA 263 Query: 181 KDFLDIGPHWALFPGGAIFIAVVAINFIGDGLRDALDARKVI 222 KDFLDIGPHWALFPGGAIFIAVVAINFIGDGLRDALDAR+VI Sbjct: 264 KDFLDIGPHWALFPGGAIFIAVVAINFIGDGLRDALDARRVI 305 >ref|YP_001203245.1| oligopeptide ABC transporter membrane protein [Bradyrhizobium sp. ORS 278] emb|CAL75008.1| Putative oligopeptide transport system permease protein oppC (ABC superfamily, membrane) [Bradyrhizobium sp. ORS 278] Length = 310 Score = 321 bits (823), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 180/222 (81%), Positives = 199/222 (89%) Query: 1 LLAGIIYERRISLAVGLAAMLVSVFVGTLIGALAGMSRGALGYALMWLTDLFLSLPQLPL 60 LL+ +IY RISLAVG AAM V +FVG +IGA+AG S+G + ALMWLTDLFLSLPQLPL Sbjct: 89 LLSRMIYGGRISLAVGFAAMAVGLFVGVVIGAVAGNSKGPVDAALMWLTDLFLSLPQLPL 148 Query: 61 LLMLIYLFRDGLKAMFGPEGGIFILIVLVIGGLRWMPVARLVRAQFLSLREKEFVEAARA 120 LL++IYLFRD LK + GPEGG F+LIVLVIGG RWMPVARLVRAQFLSLREKEFVEAARA Sbjct: 149 LLLVIYLFRDLLKGIVGPEGGTFVLIVLVIGGFRWMPVARLVRAQFLSLREKEFVEAARA 208 Query: 121 LGASPVRQVVRHILPNALGPVIIAGTIDVAAAIIAESTLSFLGLGFPPDTPTWGRILYDA 180 LGAS +R VVRHILPNALGPVI+AGTIDVAAAIIAESTLSFLGLGFPPD PTWGR+L+DA Sbjct: 209 LGASNLRLVVRHILPNALGPVIVAGTIDVAAAIIAESTLSFLGLGFPPDIPTWGRLLFDA 268 Query: 181 KDFLDIGPHWALFPGGAIFIAVVAINFIGDGLRDALDARKVI 222 KD+LDI PHWALF GGAIF+ V+AINFIGDGLRDALD RKV+ Sbjct: 269 KDYLDIAPHWALFAGGAIFLTVIAINFIGDGLRDALDPRKVM 310 >ref|YP_002496656.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium nodulans ORS 2060] gb|ACL56353.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium nodulans ORS 2060] Length = 307 Score = 312 bits (800), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 173/222 (77%), Positives = 195/222 (87%) Query: 1 LLAGIIYERRISLAVGLAAMLVSVFVGTLIGALAGMSRGALGYALMWLTDLFLSLPQLPL 60 LLA +IY RISLAVG AAMLV+ VG L+GA+AGMSR L ALMW+TDLFLSLPQLPL Sbjct: 86 LLARMIYGGRISLAVGFAAMLVATLVGVLVGAVAGMSRRFLDPALMWMTDLFLSLPQLPL 145 Query: 61 LLMLIYLFRDGLKAMFGPEGGIFILIVLVIGGLRWMPVARLVRAQFLSLREKEFVEAARA 120 LL++IYLFRD LK +FG EGG+F++IV VIGGLRWMPVARLVRAQFLSLREKEFVEAARA Sbjct: 146 LLLVIYLFRDRLKEVFGIEGGVFVMIVAVIGGLRWMPVARLVRAQFLSLREKEFVEAARA 205 Query: 121 LGASPVRQVVRHILPNALGPVIIAGTIDVAAAIIAESTLSFLGLGFPPDTPTWGRILYDA 180 GA P QV RHILPNALGPVI+A TI+V+AAIIAESTLSFLGLGFPPD PTWGR+L+DA Sbjct: 206 QGAGPWHQVTRHILPNALGPVIVAATIEVSAAIIAESTLSFLGLGFPPDIPTWGRLLFDA 265 Query: 181 KDFLDIGPHWALFPGGAIFIAVVAINFIGDGLRDALDARKVI 222 KD LD+ PHWALFPG AIF+ V++INFIGDGLRDALD R+V+ Sbjct: 266 KDHLDVAPHWALFPGAAIFLTVLSINFIGDGLRDALDPRRVL 307 >ref|YP_001242746.1| oligopeptide ABC transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ38840.1| Oligopeptide ABC transporter (permease protein) [Bradyrhizobium sp. BTAi1] Length = 310 Score = 311 bits (798), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 181/222 (81%), Positives = 199/222 (89%) Query: 1 LLAGIIYERRISLAVGLAAMLVSVFVGTLIGALAGMSRGALGYALMWLTDLFLSLPQLPL 60 LLA +IY RISLAVG AAM V++ VG ++GALAG S+G + ALMWLTDLFLSLPQLPL Sbjct: 89 LLARMIYGGRISLAVGFAAMGVALIVGIVVGALAGTSKGPVDAALMWLTDLFLSLPQLPL 148 Query: 61 LLMLIYLFRDGLKAMFGPEGGIFILIVLVIGGLRWMPVARLVRAQFLSLREKEFVEAARA 120 LL++IYLFRD LK GPEGG+F+LIVLVIGG RWMPVARLVRAQFLSLREKEFVEAARA Sbjct: 149 LLLIIYLFRDFLKGWLGPEGGVFVLIVLVIGGFRWMPVARLVRAQFLSLREKEFVEAARA 208 Query: 121 LGASPVRQVVRHILPNALGPVIIAGTIDVAAAIIAESTLSFLGLGFPPDTPTWGRILYDA 180 LGAS VR VVRHILPNALGPVI+AGTIDVAAAIIAESTLSFLGLGFPPD PTWGR+L+DA Sbjct: 209 LGASNVRLVVRHILPNALGPVIVAGTIDVAAAIIAESTLSFLGLGFPPDIPTWGRLLFDA 268 Query: 181 KDFLDIGPHWALFPGGAIFIAVVAINFIGDGLRDALDARKVI 222 KD+LDI PHWALF GGAIF+ V+AINFIGDGLRDALD RKV+ Sbjct: 269 KDYLDIAPHWALFAGGAIFLTVIAINFIGDGLRDALDPRKVM 310 >ref|YP_001767874.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium sp. 4-46] gb|ACA15440.1| binding-protein-dependent transport systems inner membrane component [Methylobacterium sp. 4-46] Length = 307 Score = 311 bits (796), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 170/222 (76%), Positives = 195/222 (87%) Query: 1 LLAGIIYERRISLAVGLAAMLVSVFVGTLIGALAGMSRGALGYALMWLTDLFLSLPQLPL 60 LLA +IY RISLAVG AAMLV+ VG ++G++AGMSR L LMW+TDLFLSLPQLPL Sbjct: 86 LLARMIYGGRISLAVGFAAMLVATLVGVVVGSIAGMSRRLLDPVLMWVTDLFLSLPQLPL 145 Query: 61 LLMLIYLFRDGLKAMFGPEGGIFILIVLVIGGLRWMPVARLVRAQFLSLREKEFVEAARA 120 LL++IYLFRD LK +FG EGGIF+++V VIGGLRWMPVARLVRAQFLSLREKEFVEAARA Sbjct: 146 LLLVIYLFRDQLKQVFGIEGGIFVMVVAVIGGLRWMPVARLVRAQFLSLREKEFVEAARA 205 Query: 121 LGASPVRQVVRHILPNALGPVIIAGTIDVAAAIIAESTLSFLGLGFPPDTPTWGRILYDA 180 GA P+ QV RHILPNALGPVI+A TI+V+AAIIAESTLSFLGLGFPPD PTWGR+L+DA Sbjct: 206 QGAGPLHQVTRHILPNALGPVIVAATIEVSAAIIAESTLSFLGLGFPPDIPTWGRLLFDA 265 Query: 181 KDFLDIGPHWALFPGGAIFIAVVAINFIGDGLRDALDARKVI 222 KD LD+ PHWALFPG AIF+ V++INFIGDGLRDALD R+V+ Sbjct: 266 KDHLDVAPHWALFPGAAIFLTVLSINFIGDGLRDALDPRRVL 307