BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0118.0006.p (320 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_06898608.1| transcriptional activator AmpR [Roseomonas ce... 387 e-105 ref|YP_001682626.1| LysR family transcriptional regulator [Caulo... 371 e-101 ref|ZP_01545113.1| probable beta lactamase transcriptional activ... 371 e-100 ref|YP_001314072.1| LysR family transcriptional regulator [Sinor... 364 1e-98 ref|YP_002545274.1| transcriptional regulator protein (activator... 363 2e-98 >ref|ZP_06898608.1| transcriptional activator AmpR [Roseomonas cervicalis ATCC 49957] gb|EFH09691.1| transcriptional activator AmpR [Roseomonas cervicalis ATCC 49957] Length = 291 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 190/284 (66%), Positives = 227/284 (79%) Query: 1 VRRHLPLNALRAFEASARLLSFTRAGMELRVTQTAISHQVKQLEDLLGTSLFRRLPRGLV 60 +R HLPLNALRAFEASAR LSFT+AG+EL VTQ AISHQVK LE+ LG +LFRRLPRGL Sbjct: 4 MRSHLPLNALRAFEASARHLSFTKAGLELHVTQAAISHQVKSLEENLGVALFRRLPRGLA 63 Query: 61 LTDEGLALLPVLSDALDRIGAAIDRIEAKGTREVVTVGCVTTFATGWLLQRVDRFKRAHP 120 LTDEG ALLP +++ RIG ++DR EA REV+TVG V + A GWLL R++RF++AHP Sbjct: 64 LTDEGAALLPEIAEGFRRIGRSLDRFEAGQVREVLTVGVVGSLAVGWLLPRLERFRQAHP 123 Query: 121 YIDLRLLTNNNRVDIAGDGLDLALRFGDGSWHGTEAIHLLSAPLSPVCCPDAADRLRKPS 180 +IDLRLLTNNNRVD+AG+GLD A+RFGDG+WHGTEA+ L SAPLSP C P A RLR+P Sbjct: 124 FIDLRLLTNNNRVDLAGEGLDCAIRFGDGAWHGTEAVRLFSAPLSPACAPGVAARLRRPE 183 Query: 181 DLAQEFLLRSYRAEEWPLWFAVAGAPCPKIQGPIFDSSVAMAEAAARGVGVGLVPIAMFE 240 DLA E LLRSYRA+EWP WFA PCP +G I DSS+ +AEAAA+G GV L+P+ +F Sbjct: 184 DLAGEVLLRSYRADEWPRWFASLDLPCPPPRGMIADSSLVLAEAAAQGAGVALLPLRLFP 243 Query: 241 NELASGRLLRPFAAEVPAGSYWLTWLKSREVTPGMRAFRDWLLE 284 ELA GRLLRPFAAE+ G+YWL+WL+SR P +RAF+ WLLE Sbjct: 244 RELAEGRLLRPFAAELSLGAYWLSWLRSRPPGPALRAFQFWLLE 287 >ref|YP_001682626.1| LysR family transcriptional regulator [Caulobacter sp. K31] gb|ABZ70128.1| transcriptional regulator, LysR family [Caulobacter sp. K31] Length = 290 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 181/281 (64%), Positives = 213/281 (75%) Query: 2 RRHLPLNALRAFEASARLLSFTRAGMELRVTQTAISHQVKQLEDLLGTSLFRRLPRGLVL 61 R LPLNALRAFEASAR LSFTRA +EL VTQ A+SHQVK LE LG SLFRRLPRGL L Sbjct: 3 RAQLPLNALRAFEASARHLSFTRAAIELCVTQAAVSHQVKGLEQRLGASLFRRLPRGLAL 62 Query: 62 TDEGLALLPVLSDALDRIGAAIDRIEAKGTREVVTVGCVTTFATGWLLQRVDRFKRAHPY 121 TDEGLALLPVL D+ +R+G ++R A EV++VG V TFA GWLL R+ F+ AHP+ Sbjct: 63 TDEGLALLPVLRDSFERMGDVLERFSAGKVMEVLSVGVVGTFAVGWLLPRLPAFREAHPF 122 Query: 122 IDLRLLTNNNRVDIAGDGLDLALRFGDGSWHGTEAIHLLSAPLSPVCCPDAADRLRKPSD 181 +DLRL TNNNR+DIAG+GLD A+RFGDG+WHGTEA+ LL+AP++P+C P A+RLR P Sbjct: 123 VDLRLFTNNNRIDIAGEGLDCAVRFGDGAWHGTEAVPLLTAPMTPLCAPAMAERLRTPEA 182 Query: 182 LAQEFLLRSYRAEEWPLWFAVAGAPCPKIQGPIFDSSVAMAEAAARGVGVGLVPIAMFEN 241 L+ E LLRSYRA++WP WFA AG P I+GP+FDSS M EAA +G GV L P MF Sbjct: 183 LSSEVLLRSYRADDWPDWFAAAGLTPPPIRGPVFDSSWVMVEAAMQGAGVALAPSMMFAR 242 Query: 242 ELASGRLLRPFAAEVPAGSYWLTWLKSREVTPGMRAFRDWL 282 +L GRL RPF E+ G YWLTWLKSR TP + AFRDWL Sbjct: 243 DLEQGRLARPFGLEIGTGKYWLTWLKSRAATPALAAFRDWL 283 >ref|ZP_01545113.1| probable beta lactamase transcriptional activator [Stappia aggregata IAM 12614] gb|EAV45956.1| probable beta lactamase transcriptional activator [Stappia aggregata IAM 12614] Length = 289 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 181/281 (64%), Positives = 212/281 (75%) Query: 5 LPLNALRAFEASARLLSFTRAGMELRVTQTAISHQVKQLEDLLGTSLFRRLPRGLVLTDE 64 LPLNALRAFEASARL SFTRAG+ELRV+QTA+SHQVK LED+L SLF RLPRG+ LTDE Sbjct: 6 LPLNALRAFEASARLCSFTRAGLELRVSQTAVSHQVKTLEDVLQVSLFERLPRGVALTDE 65 Query: 65 GLALLPVLSDALDRIGAAIDRIEAKGTREVVTVGCVTTFATGWLLQRVDRFKRAHPYIDL 124 GLALLPVL+DA R+ A+ R E REV+TVG V TFATGWLL R+ F + HP IDL Sbjct: 66 GLALLPVLTDAFRRMSEALSRFEDGNYREVLTVGAVATFATGWLLPRLAGFAKVHPQIDL 125 Query: 125 RLLTNNNRVDIAGDGLDLALRFGDGSWHGTEAIHLLSAPLSPVCCPDAADRLRKPSDLAQ 184 RL TNNNR DI DGLD LRFGDG+WH T A L+ APLSP+C P+AA RL +P+DL Sbjct: 126 RLKTNNNRADILADGLDCFLRFGDGAWHATNAEKLMDAPLSPICSPEAAPRLSEPADLVN 185 Query: 185 EFLLRSYRAEEWPLWFAVAGAPCPKIQGPIFDSSVAMAEAAARGVGVGLVPIAMFENELA 244 E LLRSYR +EW +WF A P P+ +G +FDSS+AM EA +G GV LVP +MF +L+ Sbjct: 186 EPLLRSYRMDEWAMWFQAASLPPPRARGWMFDSSLAMVEAVTQGAGVALVPTSMFSRQLS 245 Query: 245 SGRLLRPFAAEVPAGSYWLTWLKSREVTPGMRAFRDWLLET 285 SG +++PF V GSYWLTWLKSRE T MR FR W+LET Sbjct: 246 SGAIVQPFKTSVLTGSYWLTWLKSREETSAMRKFRQWMLET 286 >ref|YP_001314072.1| LysR family transcriptional regulator [Sinorhizobium medicae WSM419] gb|ABR64139.1| transcriptional regulator, LysR family [Sinorhizobium medicae WSM419] Length = 294 Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 183/289 (63%), Positives = 225/289 (77%) Query: 5 LPLNALRAFEASARLLSFTRAGMELRVTQTAISHQVKQLEDLLGTSLFRRLPRGLVLTDE 64 LPLNALRAFEASAR SFTRAG+ELRV+QTAISHQVK LEDLLG LFRRLPRGL LTDE Sbjct: 6 LPLNALRAFEASARHCSFTRAGLELRVSQTAISHQVKALEDLLGVKLFRRLPRGLALTDE 65 Query: 65 GLALLPVLSDALDRIGAAIDRIEAKGTREVVTVGCVTTFATGWLLQRVDRFKRAHPYIDL 124 G AL PV+SD R+ A + R E +EVVTVG V TFA GWL++R+ F AHP +DL Sbjct: 66 GSALAPVMSDVFKRMCATVSRFEEGNFQEVVTVGVVGTFAVGWLMERLSDFHDAHPNLDL 125 Query: 125 RLLTNNNRVDIAGDGLDLALRFGDGSWHGTEAIHLLSAPLSPVCCPDAADRLRKPSDLAQ 184 R+L+NNNRVD+AGDGLD A+RFGDGSWHGTEA+HL++APLSPVC P A RL +P+DLA+ Sbjct: 126 RILSNNNRVDLAGDGLDFAIRFGDGSWHGTEAMHLIAAPLSPVCSPLIAARLVEPADLAR 185 Query: 185 EFLLRSYRAEEWPLWFAVAGAPCPKIQGPIFDSSVAMAEAAARGVGVGLVPIAMFENELA 244 LLRSYR++EW WF AG+ P ++G +FD+S+A+AEAAARG G L+P+ MFE+ + Sbjct: 186 IELLRSYRSDEWAQWFQAAGSQSPVLRGMMFDTSLALAEAAARGFGAALLPVTMFEHYIE 245 Query: 245 SGRLLRPFAAEVPAGSYWLTWLKSREVTPGMRAFRDWLLETLRTEASEV 293 +GRL++PF V AG YWLTWLKSR+ T GM AF+ WL E ++++ Sbjct: 246 TGRLVQPFEVTVAAGDYWLTWLKSRQFTRGMLAFKRWLKEQFSGPSADL 294 >ref|YP_002545274.1| transcriptional regulator protein (activator) [Agrobacterium radiobacter K84] gb|ACM27344.1| transcriptional regulator protein (activator) [Agrobacterium radiobacter K84] Length = 291 Score = 363 bits (933), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 178/286 (62%), Positives = 214/286 (74%) Query: 4 HLPLNALRAFEASARLLSFTRAGMELRVTQTAISHQVKQLEDLLGTSLFRRLPRGLVLTD 63 LPLNALR FEASAR SFTRAGMELRVTQTAISHQVK LE++LG +LF+RLPRGL LTD Sbjct: 5 QLPLNALRVFEASARHGSFTRAGMELRVTQTAISHQVKALEEVLGITLFKRLPRGLALTD 64 Query: 64 EGLALLPVLSDALDRIGAAIDRIEAKGTREVVTVGCVTTFATGWLLQRVDRFKRAHPYID 123 EG ALLPVL+DA R+ A + ++E E++TVG V TFA GWLL R+ FK HP++D Sbjct: 65 EGHALLPVLTDAFRRMSATLSQLEEGNFDEILTVGVVGTFAIGWLLPRLTSFKTQHPHVD 124 Query: 124 LRLLTNNNRVDIAGDGLDLALRFGDGSWHGTEAIHLLSAPLSPVCCPDAADRLRKPSDLA 183 LRL TNNNR D+ DGLD LRFGDG+WHGTEAIHL+ APLSPVC P ++ L P+DLA Sbjct: 125 LRLKTNNNRADMVLDGLDFFLRFGDGAWHGTEAIHLMDAPLSPVCTPALSEGLHTPADLA 184 Query: 184 QEFLLRSYRAEEWPLWFAVAGAPCPKIQGPIFDSSVAMAEAAARGVGVGLVPIAMFENEL 243 LLRSYR +EWPLWF AGA P ++G +FDSS+ + EAAARGVG LVP+AMF E+ Sbjct: 185 NLDLLRSYRIDEWPLWFRAAGAAPPNLRGWMFDSSLTLVEAAARGVGAALVPVAMFSEEI 244 Query: 244 ASGRLLRPFAAEVPAGSYWLTWLKSREVTPGMRAFRDWLLETLRTE 289 +GR+++PF V GSYWLT LKSR T M+ FR WL+ + + Sbjct: 245 EAGRIIQPFPITVLTGSYWLTRLKSRAETASMKTFRQWLMAEMEDQ 290