BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0117.0069.p (190 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774092.1| riboflavin synthase subunit beta [Bradyrhizobiu... 325 2e-87 sp|Q89DI7.2|RISB2_BRAJA RecName: Full=6,7-dimethyl-8-ribitylluma... 301 3e-80 ref|YP_001207901.1| riboflavin synthase subunit beta [Bradyrhizo... 298 3e-79 ref|YP_001237860.1| riboflavin synthase subunit beta [Bradyrhizo... 279 1e-73 ref|YP_571002.1| riboflavin synthase subunit beta [Rhodopseudomo... 233 1e-59 >ref|NP_774092.1| riboflavin synthase subunit beta [Bradyrhizobium japonicum USDA 110] dbj|BAC52717.1| 6,7-dimethyl-8-ribityllumazine synthase [Bradyrhizobium japonicum USDA 110] Length = 196 Score = 325 bits (833), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 160/192 (83%), Positives = 173/192 (90%), Gaps = 4/192 (2%) Query: 1 MLQDQDVQASQVQTPQAENA----PDTPANPPAPQHPHFAKPQRVAFVQSSWHREVVEEC 56 MLQD VQ SQVQT +AE A P P +PPA +HP FAKPQRVAFVQ+ WHR+VVEE Sbjct: 4 MLQDPQVQTSQVQTSKAETAETTQPPVPVDPPAIEHPRFAKPQRVAFVQACWHRDVVEEA 63 Query: 57 RISFLKEIEARHITNVDVFEVPGSFEIPLHAQLLAKTRRYTAIVAAGLVVDGGIYRHEFV 116 RI+F+KE EARH+T+VDVFEVPGSFEIPLHAQ+LAKTRRYTAIVAAGLVVDGGIYRHEFV Sbjct: 64 RIAFMKEAEARHLTHVDVFEVPGSFEIPLHAQILAKTRRYTAIVAAGLVVDGGIYRHEFV 123 Query: 117 ADTVIKALMDVQLRTEVPVFSAVLTPQQFHETEVHYEFFRKHFVIKGIEVAEACANTLLS 176 ADTVIKALMDVQLRTEVPVFSAVLTPQQFHETEVHY+FFR+HF IKG+EVAEACANTLL Sbjct: 124 ADTVIKALMDVQLRTEVPVFSAVLTPQQFHETEVHYDFFRRHFAIKGVEVAEACANTLLG 183 Query: 177 LERLRGQVAAGI 188 LERLRGQVAAGI Sbjct: 184 LERLRGQVAAGI 195 >sp|Q89DI7.2|RISB2_BRAJA RecName: Full=6,7-dimethyl-8-ribityllumazine synthase 2; Short=DMRL synthase 2; Short=Lumazine synthase 2; AltName: Full=Riboflavin synthase 2 beta chain Length = 165 Score = 301 bits (771), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 144/163 (88%), Positives = 156/163 (95%) Query: 26 NPPAPQHPHFAKPQRVAFVQSSWHREVVEECRISFLKEIEARHITNVDVFEVPGSFEIPL 85 +PPA +HP FAKPQRVAFVQ+ WHR+VVEE RI+F+KE EARH+T+VDVFEVPGSFEIPL Sbjct: 2 DPPAIEHPRFAKPQRVAFVQACWHRDVVEEARIAFMKEAEARHLTHVDVFEVPGSFEIPL 61 Query: 86 HAQLLAKTRRYTAIVAAGLVVDGGIYRHEFVADTVIKALMDVQLRTEVPVFSAVLTPQQF 145 HAQ+LAKTRRYTAIVAAGLVVDGGIYRHEFVADTVIKALMDVQLRTEVPVFSAVLTPQQF Sbjct: 62 HAQILAKTRRYTAIVAAGLVVDGGIYRHEFVADTVIKALMDVQLRTEVPVFSAVLTPQQF 121 Query: 146 HETEVHYEFFRKHFVIKGIEVAEACANTLLSLERLRGQVAAGI 188 HETEVHY+FFR+HF IKG+EVAEACANTLL LERLRGQVAAGI Sbjct: 122 HETEVHYDFFRRHFAIKGVEVAEACANTLLGLERLRGQVAAGI 164 >ref|YP_001207901.1| riboflavin synthase subunit beta [Bradyrhizobium sp. ORS 278] emb|CAL79686.1| putative Riboflavin synthase, beta subunit [Bradyrhizobium sp. ORS 278] Length = 201 Score = 298 bits (763), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 150/193 (77%), Positives = 163/193 (84%), Gaps = 5/193 (2%) Query: 1 MLQDQDVQASQVQTPQAENAP-DTPAN--PPAPQHPHFAKPQRVAFVQSSWHREVVEECR 57 MLQD A+ +T Q + P +P PPAP HP FAKPQRVAFVQS+WHR+VV ECR Sbjct: 8 MLQDSIDTATTTETAQPADTPVASPPEELPPAPSHPRFAKPQRVAFVQSAWHRDVVAECR 67 Query: 58 ISFLKEIEARHI--TNVDVFEVPGSFEIPLHAQLLAKTRRYTAIVAAGLVVDGGIYRHEF 115 ++FL EIEARHI VD+FEVPGSFEIPLHAQLLAKTRRYTAIVAAGLVVDGGIYRHEF Sbjct: 68 VAFLDEIEARHIPRDRVDIFEVPGSFEIPLHAQLLAKTRRYTAIVAAGLVVDGGIYRHEF 127 Query: 116 VADTVIKALMDVQLRTEVPVFSAVLTPQQFHETEVHYEFFRKHFVIKGIEVAEACANTLL 175 VADTVIKALMDVQLRTEVPVFSAVLTPQQFHET+ H++FFRKHF KG+EVA ACA TLL Sbjct: 128 VADTVIKALMDVQLRTEVPVFSAVLTPQQFHETQAHFDFFRKHFATKGVEVATACAETLL 187 Query: 176 SLERLRGQVAAGI 188 SLERLR QVAAGI Sbjct: 188 SLERLRSQVAAGI 200 >ref|YP_001237860.1| riboflavin synthase subunit beta [Bradyrhizobium sp. BTAi1] gb|ABQ33954.1| 6,7-dimethyl-8-ribityllumazine synthase [Bradyrhizobium sp. BTAi1] Length = 203 Score = 279 bits (714), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 145/201 (72%), Positives = 158/201 (78%), Gaps = 16/201 (7%) Query: 4 DQDVQASQVQTPQAENAPD-TPANPPAP-------------QHPHFAKPQRVAFVQSSWH 49 +Q +Q + TP A+ +P T + AP HP F KPQRVAFVQS+WH Sbjct: 2 NQILQDAPTDTPHADTSPTATISADSAPAEPSPPDDAPPAPSHPRFTKPQRVAFVQSAWH 61 Query: 50 REVVEECRISFLKEIEARHITN--VDVFEVPGSFEIPLHAQLLAKTRRYTAIVAAGLVVD 107 R+VV ECR +FL EI ARHI VD+FEVPGSFEIPLHAQLLAKTRRYTAIVAAGLVVD Sbjct: 62 RDVVAECRHAFLDEIAARHIARDRVDIFEVPGSFEIPLHAQLLAKTRRYTAIVAAGLVVD 121 Query: 108 GGIYRHEFVADTVIKALMDVQLRTEVPVFSAVLTPQQFHETEVHYEFFRKHFVIKGIEVA 167 GGIYRHEFVADTVIKALMDVQLRTEVPVFSAVLTPQQFHET+ H++FFRKHF KGIEVA Sbjct: 122 GGIYRHEFVADTVIKALMDVQLRTEVPVFSAVLTPQQFHETQAHFDFFRKHFATKGIEVA 181 Query: 168 EACANTLLSLERLRGQVAAGI 188 ACA TLLSLERLR QVAAGI Sbjct: 182 TACAETLLSLERLRSQVAAGI 202 >ref|YP_571002.1| riboflavin synthase subunit beta [Rhodopseudomonas palustris BisB5] gb|ABE41101.1| 6,7-dimethyl-8-ribityllumazine synthase [Rhodopseudomonas palustris BisB5] Length = 177 Score = 233 bits (593), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 120/177 (67%), Positives = 136/177 (76%), Gaps = 4/177 (2%) Query: 14 TPQAENAPDTPANPPAPQHPHFAKPQRVAFVQSSWHREVVEECRISFLKEIEARHI--TN 71 T + + PA+P A HP FA+PQRVAFVQS+WH +VV EC +F +EI R I + Sbjct: 2 TDSVTDPAEAPASPTAAAHPRFARPQRVAFVQSAWHHDVVAECWEAFAREIVTRGIVASQ 61 Query: 72 VDVFEVPGSFEIPLHAQLLAKTRRYTAIVAAGLVVDGGIYRHEFVADTVIKALMDVQLRT 131 VD+FEVPGSFEIPLH Q LAKTRRYTAIVAAGLVVDGG+ FVA+TVIKALM+VQLRT Sbjct: 62 VDLFEVPGSFEIPLHVQTLAKTRRYTAIVAAGLVVDGGLT--GFVAETVIKALMEVQLRT 119 Query: 132 EVPVFSAVLTPQQFHETEVHYEFFRKHFVIKGIEVAEACANTLLSLERLRGQVAAGI 188 EVPVFSAV TPQ F E FF++HF KG EVA ACA+TLLSLERLRGQVAAGI Sbjct: 120 EVPVFSAVATPQSFENGEAQIAFFKQHFAAKGAEVAHACADTLLSLERLRGQVAAGI 176