BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0117.0059.p (173 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774101.1| two-component response regulator [Bradyrhizobiu... 285 2e-75 ref|NP_949704.1| two-component transcriptional regulator [Rhodop... 270 4e-71 ref|YP_001993816.1| winged helix family two component transcript... 270 4e-71 ref|YP_578333.1| two component transcriptional regulator [Nitrob... 270 8e-71 ref|YP_487776.1| two component transcriptional regulator [Rhodop... 269 9e-71 >ref|NP_774101.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC52726.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 243 Score = 285 bits (729), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 138/164 (84%), Positives = 154/164 (93%), Gaps = 1/164 (0%) Query: 3 AATMMRAPVEPADDAPHLLLVDDDRRIRDLLSRFLSGEGYRVTTAMSATDARAKLLGLHF 62 AAT+ R PV+PADDAPHLLLVDDDRRIRDLLSRFL+GEGYRV+TA SA+DAR+KL+GLHF Sbjct: 6 AATLARPPVQPADDAPHLLLVDDDRRIRDLLSRFLAGEGYRVSTAASASDARSKLMGLHF 65 Query: 63 DLLILDVMMPGENGFDLARFIRSSSTVPIIMLTARHEAEARIEGLQIGADDYVAKPFEPR 122 DLLILDVMMPGE GFDLARFIR+SS+VPI+MLTARHEAEARIEGLQIGADDYVAKPFEPR Sbjct: 66 DLLILDVMMPGETGFDLARFIRTSSSVPIVMLTARHEAEARIEGLQIGADDYVAKPFEPR 125 Query: 123 ELVLRIGNILKRTA-PPQVAVVEQIAFGPYIFHIERSELRQGEE 165 EL LRI NILKR A PPQ A+VE+IAFGPY++H++R ELRQGEE Sbjct: 126 ELALRINNILKRAAPPPQAAMVEKIAFGPYVYHLDRGELRQGEE 169 >ref|NP_949704.1| two-component transcriptional regulator [Rhodopseudomonas palustris CGA009] emb|CAE29809.1| two-component transcriptional regulator, winged helix family [Rhodopseudomonas palustris CGA009] Length = 240 Score = 270 bits (691), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 132/165 (80%), Positives = 144/165 (87%) Query: 1 VQAATMMRAPVEPADDAPHLLLVDDDRRIRDLLSRFLSGEGYRVTTAMSATDARAKLLGL 60 +Q AT+ + P+ PADDAPHLLLVDDDRRIRDLLSRFL+ EGYRVTTA S DARAKL GL Sbjct: 2 IQLATLTKKPIRPADDAPHLLLVDDDRRIRDLLSRFLASEGYRVTTAQSVRDARAKLAGL 61 Query: 61 HFDLLILDVMMPGENGFDLARFIRSSSTVPIIMLTARHEAEARIEGLQIGADDYVAKPFE 120 FDLLILDVMMPGE GFDLAR IR +S VPI+MLTARHEAE+RIEGLQIGADDYVAKPFE Sbjct: 62 DFDLLILDVMMPGETGFDLARSIRETSDVPIVMLTARHEAESRIEGLQIGADDYVAKPFE 121 Query: 121 PRELVLRIGNILKRTAPPQVAVVEQIAFGPYIFHIERSELRQGEE 165 PREL+LRIGNILKRTAP A E +AFGPY+FHIER ELRQG+E Sbjct: 122 PRELLLRIGNILKRTAPAPAAKAETVAFGPYVFHIERGELRQGDE 166 >ref|YP_001993816.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris TIE-1] gb|ACF03341.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] Length = 240 Score = 270 bits (691), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 132/165 (80%), Positives = 144/165 (87%) Query: 1 VQAATMMRAPVEPADDAPHLLLVDDDRRIRDLLSRFLSGEGYRVTTAMSATDARAKLLGL 60 +Q AT+ + P+ PADDAPHLLLVDDDRRIRDLLSRFL+ EGYRVTTA S DARAKL GL Sbjct: 2 IQLATLAKKPIRPADDAPHLLLVDDDRRIRDLLSRFLASEGYRVTTAQSVRDARAKLAGL 61 Query: 61 HFDLLILDVMMPGENGFDLARFIRSSSTVPIIMLTARHEAEARIEGLQIGADDYVAKPFE 120 FDLLILDVMMPGE GFDLAR IR +S VPI+MLTARHEAE+RIEGLQIGADDYVAKPFE Sbjct: 62 DFDLLILDVMMPGETGFDLARSIRETSDVPIVMLTARHEAESRIEGLQIGADDYVAKPFE 121 Query: 121 PRELVLRIGNILKRTAPPQVAVVEQIAFGPYIFHIERSELRQGEE 165 PREL+LRIGNILKRTAP A E +AFGPY+FHIER ELRQG+E Sbjct: 122 PRELLLRIGNILKRTAPAPAAKAETVAFGPYVFHIERGELRQGDE 166 >ref|YP_578333.1| two component transcriptional regulator [Nitrobacter hamburgensis X14] gb|ABE63873.1| two component transcriptional regulator, winged helix family [Nitrobacter hamburgensis X14] Length = 242 Score = 270 bits (689), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 133/165 (80%), Positives = 144/165 (87%) Query: 1 VQAATMMRAPVEPADDAPHLLLVDDDRRIRDLLSRFLSGEGYRVTTAMSATDARAKLLGL 60 Q A R PV PADDAPHLLLVDDDRRIRDLLSRFL GEGYRVTTAMSA AR+KLLGL Sbjct: 4 TQTAGGARPPVRPADDAPHLLLVDDDRRIRDLLSRFLVGEGYRVTTAMSAKAARSKLLGL 63 Query: 61 HFDLLILDVMMPGENGFDLARFIRSSSTVPIIMLTARHEAEARIEGLQIGADDYVAKPFE 120 +FDLLILD+MMPGE GFDLARFIR+SS+VPIIMLTARHEAE+RIEGLQIGADDYVAKPFE Sbjct: 64 YFDLLILDIMMPGETGFDLARFIRASSSVPIIMLTARHEAESRIEGLQIGADDYVAKPFE 123 Query: 121 PRELVLRIGNILKRTAPPQVAVVEQIAFGPYIFHIERSELRQGEE 165 PRELVLRIGNILKRT P IAFGPY++H+ER ELRQG++ Sbjct: 124 PRELVLRIGNILKRTMPLPAVRTGSIAFGPYVYHLERGELRQGDD 168 >ref|YP_487776.1| two component transcriptional regulator [Rhodopseudomonas palustris HaA2] gb|ABD08865.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris HaA2] Length = 241 Score = 269 bits (688), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 131/165 (79%), Positives = 145/165 (87%) Query: 1 VQAATMMRAPVEPADDAPHLLLVDDDRRIRDLLSRFLSGEGYRVTTAMSATDARAKLLGL 60 +Q AT+ + PV PADDAPHLLLVDDDRRIRDLLSRFL+ EGYRVTTA S DARAKL GL Sbjct: 2 IQLATLAKKPVRPADDAPHLLLVDDDRRIRDLLSRFLASEGYRVTTAQSGRDARAKLAGL 61 Query: 61 HFDLLILDVMMPGENGFDLARFIRSSSTVPIIMLTARHEAEARIEGLQIGADDYVAKPFE 120 +FDLLILDVMMPGE GFDLARFIR+ S VPI+MLTARHEAEARIEGLQ+GADDYVAKPFE Sbjct: 62 NFDLLILDVMMPGETGFDLARFIRTESDVPIVMLTARHEAEARIEGLQLGADDYVAKPFE 121 Query: 121 PRELVLRIGNILKRTAPPQVAVVEQIAFGPYIFHIERSELRQGEE 165 PREL+LRI NILKRT+P + E IAFGPY+FHI+R ELRQG+E Sbjct: 122 PRELLLRICNILKRTSPAPASKAETIAFGPYVFHIDRGELRQGDE 166